FvH4_3g34920

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000430
Physical Location & Seq
Forward (+)
30157967 .. 30159407
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34920.t1

Sequence Viewer

Length: 1179 bp
ATGAACAGCAGCAAACACTCAAAACAAAACGAAGCACAAGAGATCAACGATGCCAGGAAACCCTACAATATTAAGCAGCTGCCGATCGAGTTAATAGCAGAGATCTTCTTCAAACTACCAATCACAACACTCTTTCATTGCAAATACGTGTGCAAGTCTTGGCGTGTTTTGTTCTCAAACCCTAATTTCACCAGAGAATTATTCTCACGAACACTCAATTGGCTTTTGATCCATGTCTGCAACAGCTTATTCGGGGACAAGTTCTTCTTGGTCGATATTGACATTCGCTCGCCCTCTGAACCAAAGCTCGCCTTGGAGCTTCCAAGAGATCCAAACTTCGTACACCTTGGTGCACAGATTAAAGGTTCATGCAACGGCCTCCTTCTACGTAAGGATTTATCTTACCCCTATCTTGGTCGATATTGTATATCAAATCCTATGACTGGTGAGTGTTTACCCCTTCCTGAATGTTATATAAAACCATCTGTTGTTGGGTTTGGGTTTAGTTCCGTCAGTCATGTCTATAAAGTAGTGTTCATGCAACCAAAGAAAGGAGAAGGATGGGTTATGACTGTCGGCTCTAAAACTTGGAGAAGGCTTGACATTCATAACTTCAAAGGCGCTCCTCCGCAACATATGATTTATCTAAATGGATTCCTTCATGGAATTGTTTGTTCGAGTCAAAATGGAACTATGTCGAGTCTTCAACAATACCTGAACCGGCTGAACGGATTGTCTGCCTCAACTCGTTCACTATGTGGCTTCGATGTTGAAAACGAGCAGTTTCAACAATTACCTGCACCTTCAACTTTGGAAGGAGATCAATCTTCTACACATTGGAATCTCAAAGTCATGAGAGGTTGTCTTTCCCTATTTGTTAGGGATAGCGATGGCGTAAATATGTATTGTTGGGTGATGAATGACTATGGCGTTAAGGAGTCTTGGACCAAAGACTTTCAAATTAGAGAAAGGTCAGTACCTCGTGTGTTAATGTTTTCTACGGAAGAGGAGCAAGTATTGGCGTTAGAAAATGGGCAGTTGCGTTTCTTTTCTGTAAGACAAGGAAGGTGGAGGCGGCTTGTTGTGAGCAATGAGGTTGATGGCATTCCAAGGGAGATCAACAATGCATTTTTCTATACTCCAAATTTTACTTTGATTAATGATATGATCAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

393

Amino Acids

45.09

Weight (kDa)

8.87

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 65 5.5e-09 F-box domain
F-box-like PF12937 25 - 68 3.4e-07 F-box-like
FBA_3 PF08268 119 - 320 9.6e-15 F-box associated beta propeller domain
FBA_1 PF07734 122 - 343 1.4e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 805
AciI CCGC 2 cut(s) 629, 1075
AclWI GGATC 2 cut(s) 223, 323
AcsI RAATTY 1 cut(s) 1144
AdeI CACNNNGTG 1 cut(s) 758
AfaI GTAC 2 cut(s) 342, 978
AfiI CCNNNNNNNGG 3 cut(s) 413, 443, 551
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 7 cut(s) 112, 616, 707, 773, 788, 807, 959
AjnI CCWGG 1 cut(s) 53
AjuI GAANNNNNNNTTGG 2 cut(s) 202, 234
AleI CACNNNNGTG 1 cut(s) 348
AluBI AGCT 4 cut(s) 79, 246, 307, 319
AluI AGCT 4 cut(s) 79, 246, 307, 319
Alw21I GWGCWC 1 cut(s) 355
Alw44I GTGCAC 1 cut(s) 351
AlwI GGATC 2 cut(s) 223, 323
AoxI GGCC 1 cut(s) 376
ApaLI GTGCAC 1 cut(s) 351
ApeKI GCWGC 3 cut(s) 9, 76, 79
ApoI RAATTY 1 cut(s) 1144
AseI ATTAAT 1 cut(s) 1158
AspLEI GCGC 1 cut(s) 623
AspS9I GGNCC 1 cut(s) 945
AsuHPI GGTGA 3 cut(s) 181, 458, 925
AvaII GGWCC 1 cut(s) 945
BaeGI GKGCMC 1 cut(s) 355
BauI CACGAG 1 cut(s) 981
BbsI GAAGAC 1 cut(s) 695
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 3 cut(s) 21, 66, 88
BccI CCATC 4 cut(s) 490, 555, 884, 1094
BceAI ACGGC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 55
BclI TGATCA 1 cut(s) 1167
BfoI RGCGCY 1 cut(s) 624
BfuAI ACCTGC 1 cut(s) 805
BglII AGATCT 1 cut(s) 102
BisI GCNGC 4 cut(s) 10, 77, 80, 1076
BlsI GCNGC 4 cut(s) 11, 78, 81, 1077
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 945
BmgT120I GGNCC 1 cut(s) 945
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 695
BsaAI YACGTR 2 cut(s) 148, 389
BsaJI CCNNGG 3 cut(s) 312, 346, 1109
Bsc4I CCNNNNNNNGG 3 cut(s) 413, 443, 551
Bse118I RCCGGY 1 cut(s) 720
Bse1I ACTGG 1 cut(s) 448
Bse3DI GCAATG 2 cut(s) 136, 1096
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 3 cut(s) 312, 346, 1109
BseGI GGATG 1 cut(s) 566
BseLI CCNNNNNNNGG 3 cut(s) 413, 443, 551
BseMI GCAATG 2 cut(s) 136, 1096
BseNI ACTGG 1 cut(s) 448
BseRI GAGGAG 2 cut(s) 615, 1022
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 3 cut(s) 21, 66, 88
BsgI GTGCAG 1 cut(s) 783
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 378
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 355
BsiSI CCGG 1 cut(s) 721
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 3 cut(s) 413, 443, 551
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 1 cut(s) 1104
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 8 cut(s) 42, 84, 102, 228, 328, 820, 1116, 1167
BspACI CCGC 2 cut(s) 629, 1075
BspANI GGCC 1 cut(s) 378
BspHI TCATGA 1 cut(s) 852
BspMI ACCTGC 1 cut(s) 805
BspPI GGATC 2 cut(s) 223, 323
BsrDI GCAATG 2 cut(s) 136, 1096
BsrFI RCCGGY 1 cut(s) 720
BsrI ACTGG 1 cut(s) 448
BssAI RCCGGY 1 cut(s) 720
BssECI CCNNGG 3 cut(s) 312, 346, 1109
BssMI GATC 8 cut(s) 42, 84, 102, 228, 328, 820, 1116, 1167
BssSI CACGAG 1 cut(s) 981
BssT1I CCWWGG 3 cut(s) 312, 346, 1109
Bst2BI CACGAG 1 cut(s) 981
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 1 cut(s) 999
BstBAI YACGTR 2 cut(s) 148, 389
BstC8I GCNNGC 2 cut(s) 290, 309
BstF5I GGATG 1 cut(s) 566
BstH2I RGCGCY 1 cut(s) 624
BstHHI GCGC 1 cut(s) 623
BstKTI GATC 8 cut(s) 45, 87, 105, 231, 331, 823, 1119, 1170
BstMBI GATC 8 cut(s) 42, 84, 102, 228, 328, 820, 1116, 1167
BstMCI CGRYCG 1 cut(s) 87
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstSLI GKGCMC 1 cut(s) 355
BstSNI TACGTA 1 cut(s) 389
BstV1I GCAGC 3 cut(s) 21, 66, 88
BstV2I GAAGAC 1 cut(s) 695
BstX2I RGATCY 2 cut(s) 102, 328
BstYI RGATCY 2 cut(s) 102, 328
BsuRI GGCC 1 cut(s) 378
BtgZI GCGATG 1 cut(s) 903
BtsCI GGATG 1 cut(s) 566
BveI ACCTGC 1 cut(s) 805
Cac8I GCNNGC 2 cut(s) 290, 309
CciI TCATGA 1 cut(s) 852
CfoI GCGC 1 cut(s) 623
Cfr10I RCCGGY 1 cut(s) 720
Cfr13I GGNCC 1 cut(s) 945
Csp6I GTAC 2 cut(s) 341, 977
CspCI CAANNNNNGTGG 2 cut(s) 1049, 1084
CviAII CATG 6 cut(s) 233, 369, 518, 538, 662, 853
CviQI GTAC 2 cut(s) 341, 977
DpnI GATC 8 cut(s) 44, 86, 104, 230, 330, 822, 1118, 1169
DpnII GATC 8 cut(s) 42, 84, 102, 228, 328, 820, 1116, 1167
DraIII CACNNNGTG 1 cut(s) 758
Eam1104I CTCTTC 1 cut(s) 999
EarI CTCTTC 1 cut(s) 999
Eco105I TACGTA 1 cut(s) 389
Eco130I CCWWGG 3 cut(s) 312, 346, 1109
Eco47I GGWCC 1 cut(s) 945
EcoRII CCWGG 1 cut(s) 53
EcoT14I CCWWGG 3 cut(s) 312, 346, 1109
EcoT22I ATGCAT 1 cut(s) 1129
ErhI CCWWGG 3 cut(s) 312, 346, 1109
FaeI CATG 6 cut(s) 236, 372, 521, 541, 665, 856
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 296, 328
FaqI GGGAC 1 cut(s) 269
FatI CATG 6 cut(s) 232, 368, 517, 537, 661, 852
FauNDI CATATG 1 cut(s) 636
FbaI TGATCA 1 cut(s) 1167
Fnu4HI GCNGC 4 cut(s) 10, 77, 80, 1076
FokI GGATG 1 cut(s) 573
Fsp4HI GCNGC 4 cut(s) 10, 77, 80, 1076
GlaI GCGC 1 cut(s) 622
GluI GCNGC 4 cut(s) 10, 77, 80, 1076
HaeII RGCGCY 1 cut(s) 624
HaeIII GGCC 1 cut(s) 378
HapII CCGG 1 cut(s) 721
HhaI GCGC 1 cut(s) 623
Hin1II CATG 6 cut(s) 236, 372, 521, 541, 665, 856
Hin6I GCGC 1 cut(s) 621
HinP1I GCGC 1 cut(s) 621
HinfI GANTC 5 cut(s) 654, 679, 700, 841, 938
HpaII CCGG 1 cut(s) 721
HphI GGTGA 3 cut(s) 181, 458, 925
Hpy166II GTNNAC 4 cut(s) 343, 353, 455, 752
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 4 cut(s) 207, 464, 853, 1171
Hpy8I GTNNAC 4 cut(s) 343, 353, 455, 752
HpyAV CCTTC 8 cut(s) 392, 470, 551, 588, 668, 809, 813, 1059
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4IV ACGT 2 cut(s) 147, 388
HpyCH4V TGCA 8 cut(s) 141, 153, 240, 353, 372, 541, 800, 1127
HpySE526I ACGT 2 cut(s) 147, 388
Hsp92II CATG 6 cut(s) 236, 372, 521, 541, 665, 856
HspAI GCGC 1 cut(s) 621
Ksp22I TGATCA 1 cut(s) 1167
Kzo9I GATC 8 cut(s) 42, 84, 102, 228, 328, 820, 1116, 1167
LmnI GCTCC 3 cut(s) 316, 628, 1009
LpnPI CCDG 8 cut(s) 40, 67, 205, 429, 477, 728, 734, 810
Lsp1109I GCAGC 3 cut(s) 21, 66, 88
LweI GCATC 1 cut(s) 40
MaeII ACGT 2 cut(s) 147, 388
MalI GATC 8 cut(s) 44, 86, 104, 230, 330, 822, 1118, 1169
MboI GATC 8 cut(s) 42, 84, 102, 228, 328, 820, 1116, 1167
MboII GAAGA 6 cut(s) 97, 100, 256, 695, 819, 1016
MfeI CAATTG 1 cut(s) 217
MflI RGATCY 2 cut(s) 102, 328
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 7 cut(s) 184, 197, 217, 666, 791, 960, 1144
MlyI GAGTC 3 cut(s) 688, 709, 947
MnlI CCTC 9 cut(s) 304, 389, 636, 751, 851, 990, 1000, 1065, 1087
Mph1103I ATGCAT 1 cut(s) 1129
MseI TTAA 7 cut(s) 72, 92, 360, 933, 989, 1158, 1177
MslI CAYNNNNRTG 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 1 cut(s) 721
MspR9I CCNGG 1 cut(s) 55
MunI CAATTG 1 cut(s) 217
Mva1269I GAATGC 1 cut(s) 1104
MvaI CCWGG 1 cut(s) 55
NdeI CATATG 1 cut(s) 636
NdeII GATC 8 cut(s) 42, 84, 102, 228, 328, 820, 1116, 1167
NlaIII CATG 6 cut(s) 236, 372, 521, 541, 665, 856
NsiI ATGCAT 1 cut(s) 1129
OliI CACNNNNGTG 1 cut(s) 348
PagI TCATGA 1 cut(s) 852
PctI GAATGC 1 cut(s) 1104
PfeI GAWTC 2 cut(s) 654, 841
PkrI GCNGC 4 cut(s) 11, 78, 81, 1077
Ple19I CGATCG 1 cut(s) 87
PleI GAGTC 3 cut(s) 687, 708, 946
PpsI GAGTC 3 cut(s) 687, 708, 946
Ppu21I YACGTR 2 cut(s) 148, 389
PshBI ATTAAT 1 cut(s) 1158
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspPI GGNCC 1 cut(s) 945
PsuI RGATCY 2 cut(s) 102, 328
PvuI CGATCG 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 2 cut(s) 342, 978
RsaNI GTAC 2 cut(s) 341, 977
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 7 cut(s) 72, 92, 360, 933, 989, 1158, 1177
SatI GCNGC 4 cut(s) 10, 77, 80, 1076
Sau3AI GATC 8 cut(s) 42, 84, 102, 228, 328, 820, 1116, 1167
Sau96I GGNCC 1 cut(s) 945
SchI GAGTC 3 cut(s) 688, 709, 947
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 355
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 1 cut(s) 945
SmiMI CAYNNNNRTG 1 cut(s) 348
SnaBI TACGTA 1 cut(s) 389
Sse9I AATT 7 cut(s) 184, 197, 217, 666, 791, 960, 1144
SsiI CCGC 2 cut(s) 629, 1075
SspI AATATT 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 53
StyI CCWWGG 3 cut(s) 312, 346, 1109
TaaI ACNGT 1 cut(s) 574
TaiI ACGT 2 cut(s) 150, 391
TaqI TCGA 6 cut(s) 87, 273, 418, 677, 698, 765
TasI AATT 7 cut(s) 184, 197, 217, 666, 791, 960, 1144
TauI GCSGC 1 cut(s) 1078
TfiI GAWTC 2 cut(s) 654, 841
Tru1I TTAA 7 cut(s) 72, 92, 360, 933, 989, 1158, 1177
Tru9I TTAA 7 cut(s) 72, 92, 360, 933, 989, 1158, 1177
TseI GCWGC 3 cut(s) 9, 76, 79
TspDTI ATGAA 7 cut(s) 17, 125, 357, 526, 596, 650, 932
TspGWI ACGGA 3 cut(s) 499, 744, 1016
VneI GTGCAC 1 cut(s) 351
VpaK11BI GGWCC 1 cut(s) 945
VspI ATTAAT 1 cut(s) 1158
XapI RAATTY 1 cut(s) 1144
Zsp2I ATGCAT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.