Rorug03G0138700

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000155
Physical Location & Seq
Reverse (-)
11378964 .. 11384372
5409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0138700.1

Sequence Viewer

Length: 2025 bp
ATGGTACCACAGAGGAGGGTGGATTATGGCTTCAATGGCTACCAAGTGCCTGAGGTTCCTCGAGCTTCTAGATCAGCTAGGGGAAAGGGACCTATCAGGAAGAAACTTGAAGGCAACCAGATTCATGCGTTTGAGATTTTGGCTAGCGTAGCTGGTAAACTATTGGAGAGTGAAAAACCTCTACCTAGTAATGCTTCTAGTGGAAAGGTTCCTCATTACACGTTTGATGATACCATAAGGAAGCAACAAAATAAAGGAAACTCATTGAAGGAAGAACCTTGTGAGTGGGGAAGCTGTGATGAAGAAGCCTCTTTCCGTGCCTGTGGGGTGCAAGGGCAAAGTCATACTCTGAATCAGTTTTCACATCCACAAGAAAACTTTAGTTTTGAGATGAGCGGGACATCAAAAAGTAATGATCACTCGGGGAAGGTTTGTTTTGCTAAAAAGTTGGGTACAGTTGATAGCAGTTCTTCTTGTGGAAGCTATTCTAACAAAGTAATCAGTGACTGTTTCTTATCTGGGGATTATATTGAAGAGGAAGAGAAAGCACATGTTGTACTAAAGAGGAAACTAGAGGCTGAACCATCAAAGGATACAAGTGTAAAGGATGGAAAAGCCAATGTTTTAGTCTGTTCAGAAGATTTGCTAGAAATGGAAGGAAAGCCTCCTGAATTGGTCAGTTCTGAACATGTTGTAAAGGTTCCTTTTTCAGGGGAATGCAAAATTCATGGTTCTTTCCCCTGCCATTGTGTTAAAGTAGTTAGTAGAGATGATGACGAAAATTCTGTTGGGTATGTCGAACCCTGTACCATAGTAGAGGAGTTTGAGCACACACCTGTTGGTGATAGGAAAATAAAGAATCTGTCAGCATCCAAGCACCGGAGAATAGCTCCAGATATGAAGATTGGGGGTTATCATAGAACTGATGGGAAAATAAAGCAAGTTTACCGTAATGGGAGACCTTGTTACGCACATCAAAGATCACAGAAGATTTATCCTTTTAAGAAGAGAAATTTCTTTAACCGGAGGCCATTTACTACGTCTGATAGAGGCTGTAACTGTGAAAACATATGTAGTTCACCTGACAAGAGAGAAGACGGTAGCAACTGCAACGCAGCAATTGGACGGTCATCCTCAACAACAGGTCGAGAACCTTCCAAGTCCAATGATCGTAATGTGAGGCTGAGTATTAAATCCTTCAAAGTTCCCGAACTTTTCTTTGAAATTCCTACAACTGCGACTGTTGGTTCATTGAAGAGGACAGTAATGGAGGCAGTAACTTCTATACTTGGAGAGGGATTACATGTTGGGATCCTGGTTCAGGGAAAGAAGGTCAGAGATGACAACAAAACATTACTTCAGACTGGGATTTCGCATGATGACAAGCTTGACAATTTGGGTTTTACCTTGGAGCCCAAACATTCAAAGCTTATGCATTCTCAATGCGGCAATGATCCTTCCTCTGTTTCTGGCAGAACTCAAGAGTTAACCAGGCATTCTGCATCTTTGGTCTCACGACCAGGGACTTCAAATGTCTCCCTGAATCCTCCAGTAACCAATTTGGGTAGCTGTGTTGACAAAGACTTGAATGCAGTGCCCTCTCTTGCTAGTACTTCAATTGACAAAACCCCACCAGCATCCCAAGCTCTGGTTGCAGTTCCACCAATTAACGCAAAGCCACTGGCTGTGGTTCCTTTTCATAGGAGATCTGGGCATCCAGCATATGTACAGCGCCGGATGAGGAGACCTTTCTCTGTTTCAGAAGTAGAAGCATTGGTTCAGGCTGTTGAGAAACTTGGAACAGGAAGGTGGCGTGATGTTAAAATGCGTGCTTTTGATAATGCAAAACATCGAACTTATGTGGATTTGAAGGACAAGTGGAAAACATTGGTGCACACAGCAAGGATCTCACCTCAGCAAAGGAGAGGAGAACCTGTTCCTCAGGAGCTTTTGGACAGAGTCCTAGCCGCCCATGCCTACTGGTCTCAGCGGCAAGCCAAGCAGCAGCTCAGAGCAGCAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

674

Amino Acids

74.67

Weight (kDa)

9.26

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_TPR1 PF23603 392 - 460 2.7e-38 Telomere repeat-binding protein 1-like, ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 1648
AccBSI CCGCTC 1 cut(s) 396
AciI CCGC 4 cut(s) 396, 1446, 1968, 1990
AclWI GGATC 4 cut(s) 1306, 1319, 1448, 1913
AcsI RAATTY 4 cut(s) 723, 781, 1012, 1224
AcuI CTGAAG 1 cut(s) 1343
AfaI GTAC 6 cut(s) 6, 454, 558, 808, 1612, 1728
AfiI CCNNNNNNNGG 4 cut(s) 710, 879, 1321, 1648
AflIII ACRYGT 4 cut(s) 219, 550, 688, 1303
AjnI CCWGG 3 cut(s) 1314, 1490, 1519
AjuI GAANNNNNNNTTGG 2 cut(s) 771, 803
AloI GAACNNNNNNTCC 2 cut(s) 1920, 1952
Alw21I GWGCWC 2 cut(s) 831, 1896
Alw26I GTCTC 5 cut(s) 952, 1516, 1540, 1738, 1989
Alw44I GTGCAC 1 cut(s) 1892
AlwI GGATC 4 cut(s) 1306, 1319, 1448, 1913
AlwNI CAGNNNCTG 1 cut(s) 507
Ama87I CYCGRG 2 cut(s) 60, 421
AoxI GGCC 1 cut(s) 1028
ApaLI GTGCAC 1 cut(s) 1892
ApeKI GCWGC 5 cut(s) 1115, 2002, 2005, 2015, 2018
ApoI RAATTY 4 cut(s) 723, 781, 1012, 1224
ArsI GACNNNNNNTTYG 2 cut(s) 1354, 1386
Asp700I GAANNNNTTC 2 cut(s) 484, 1935
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 1734
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 3 cut(s) 854, 1071, 1902
AsuNHI GCTAGC 1 cut(s) 143
AvaI CYCGRG 2 cut(s) 60, 421
AvaII GGWCC 1 cut(s) 89
AxyI CCTNAGG 2 cut(s) 51, 1941
BaeGI GKGCMC 2 cut(s) 1599, 1896
BaeI ACNNNNGTAYC 2 cut(s) 585, 618
BamHI GGATCC 1 cut(s) 1311
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 1416
BbsI GAAGAC 1 cut(s) 1101
Bbv12I GWGCWC 2 cut(s) 831, 1896
BbvCI CCTCAGC 1 cut(s) 1914
BbvI GCAGC 3 cut(s) 1127, 2014, 2017
BccI CCATC 3 cut(s) 592, 602, 920
BciT130I CCWGG 3 cut(s) 1316, 1492, 1521
BciVI GTATCC 1 cut(s) 586
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 5 cut(s) 952, 1516, 1540, 1738, 1989
BfaI CTAG 9 cut(s) 69, 78, 144, 186, 198, 572, 647, 1608, 1964
BfoI RGCGCY 1 cut(s) 1735
BfuI GTATCC 1 cut(s) 586
BglII AGATCT 1 cut(s) 1706
BisI GCNGC 8 cut(s) 1116, 1447, 1968, 1991, 2003, 2006, 2016, 2019
BlsI GCNGC 8 cut(s) 1117, 1448, 1969, 1992, 2004, 2007, 2017, 2020
BmcAI AGTACT 1 cut(s) 1612
Bme1390I CCNGG 3 cut(s) 1316, 1492, 1521
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 2 cut(s) 60, 421
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 8 cut(s) 6, 57, 90, 210, 702, 1313, 1413, 1692
BmrFI CCNGG 3 cut(s) 1316, 1492, 1521
BmrI ACTGGG 1 cut(s) 1374
BmsI GCATC 4 cut(s) 878, 1511, 1646, 1723
BmtI GCTAGC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 1374
BpiI GAAGAC 1 cut(s) 1101
BplI GAGNNNNNCTC 2 cut(s) 874, 906
BpmI CTGGAG 2 cut(s) 876, 1533
Bpu10I CCTNAGC 1 cut(s) 1914
BpuEI CTTGAG 1 cut(s) 1464
BsaI GGTCTC 4 cut(s) 952, 1516, 1738, 1989
BsaJI CCNNGG 2 cut(s) 1407, 1520
BsaWI WCCGGW 2 cut(s) 879, 1023
BsaXI ACNNNNNCTCC 4 cut(s) 949, 979, 1920, 1950
Bsc4I CCNNNNNNNGG 4 cut(s) 710, 879, 1321, 1648
Bse1I ACTGG 4 cut(s) 1369, 1550, 1686, 1985
Bse21I CCTNAGG 2 cut(s) 51, 1941
Bse3DI GCAATG 1 cut(s) 1456
BseBI CCWGG 3 cut(s) 1316, 1492, 1521
BseDI CCNNGG 2 cut(s) 1407, 1520
BseGI GGATG 7 cut(s) 364, 613, 869, 1130, 1637, 1714, 1743
BseLI CCNNNNNNNGG 4 cut(s) 710, 879, 1321, 1648
BseMI GCAATG 1 cut(s) 1456
BseMII CTCAG 6 cut(s) 42, 1175, 1928, 1955, 2000, 2023
BseNI ACTGG 4 cut(s) 1369, 1550, 1686, 1985
BseRI GAGGAG 4 cut(s) 28, 833, 1756, 1941
BseSI GKGCMC 2 cut(s) 1599, 1896
BseXI GCAGC 3 cut(s) 1127, 2014, 2017
BshFI GGCC 1 cut(s) 1030
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 831, 1896
BsiHKCI CYCGRG 2 cut(s) 60, 421
BsiSI CCGG 3 cut(s) 880, 1024, 1735
BslFI GGGAC 3 cut(s) 102, 412, 1537
BslI CCNNNNNNNGG 4 cut(s) 710, 879, 1321, 1648
BsmAI GTCTC 5 cut(s) 952, 1516, 1540, 1738, 1989
BsmFI GGGAC 3 cut(s) 102, 412, 1537
BsmI GAATGC 4 cut(s) 722, 1435, 1495, 1594
BsnI GGCC 1 cut(s) 1030
Bso31I GGTCTC 4 cut(s) 952, 1516, 1738, 1989
BsoBI CYCGRG 2 cut(s) 60, 421
Bsp1286I GDGCHC 4 cut(s) 831, 1416, 1599, 1896
Bsp1407I TGTACA 1 cut(s) 1726
Bsp143I GATC 8 cut(s) 71, 415, 980, 1168, 1311, 1453, 1706, 1905
BspACI CCGC 4 cut(s) 396, 1446, 1968, 1990
BspANI GGCC 1 cut(s) 1030
BspCNI CTCAG 6 cut(s) 43, 1176, 1927, 1954, 1999, 2022
BspLI GGNNCC 8 cut(s) 6, 57, 90, 210, 702, 1313, 1413, 1692
BspOI GCTAGC 1 cut(s) 147
BspPI GGATC 4 cut(s) 1306, 1319, 1448, 1913
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 4 cut(s) 952, 1516, 1738, 1989
BsrBI CCGCTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 1456
BsrGI TGTACA 1 cut(s) 1726
BsrI ACTGG 4 cut(s) 1369, 1550, 1686, 1985
BssECI CCNNGG 2 cut(s) 1407, 1520
BssMI GATC 8 cut(s) 71, 415, 980, 1168, 1311, 1453, 1706, 1905
BssT1I CCWWGG 1 cut(s) 1407
Bst2UI CCWGG 3 cut(s) 1316, 1492, 1521
Bst4CI ACNGT 8 cut(s) 457, 509, 950, 1061, 1100, 1128, 1243, 1264
Bst6I CTCTTC 4 cut(s) 528, 534, 1001, 1250
BstAUI TGTACA 1 cut(s) 1726
BstC8I GCNNGC 3 cut(s) 145, 1830, 1995
BstDEI CTNAG 6 cut(s) 51, 1184, 1914, 1941, 1986, 2009
BstENI CCTNNNNNAGG 2 cut(s) 708, 1319
BstF5I GGATG 7 cut(s) 364, 613, 869, 1130, 1637, 1714, 1743
BstH2I RGCGCY 1 cut(s) 1735
BstHHI GCGC 1 cut(s) 1734
BstKTI GATC 8 cut(s) 74, 418, 983, 1171, 1314, 1456, 1709, 1908
BstMAI GTCTC 5 cut(s) 952, 1516, 1540, 1738, 1989
BstMBI GATC 8 cut(s) 71, 415, 980, 1168, 1311, 1453, 1706, 1905
BstMWI GCNNNNNNNGC 6 cut(s) 36, 149, 1643, 1652, 1973, 1999
BstNI CCWGG 3 cut(s) 1316, 1492, 1521
BstNSI RCATGY 3 cut(s) 554, 692, 1307
BstSCI CCNGG 3 cut(s) 1314, 1490, 1519
BstSLI GKGCMC 2 cut(s) 1599, 1896
BstV1I GCAGC 3 cut(s) 1127, 2014, 2017
BstV2I GAAGAC 1 cut(s) 1101
BstX2I RGATCY 3 cut(s) 1311, 1706, 1905
BstYI RGATCY 3 cut(s) 1311, 1706, 1905
Bsu36I CCTNAGG 2 cut(s) 51, 1941
BsuI GTATCC 1 cut(s) 586
BsuRI GGCC 1 cut(s) 1030
BtsCI GGATG 7 cut(s) 364, 613, 869, 1130, 1637, 1714, 1743
BtsI GCAGTG 1 cut(s) 1599
BtsIMutI CAGTG 3 cut(s) 508, 1599, 1679
Cac8I GCNNGC 3 cut(s) 145, 1830, 1995
CaiI CAGNNNCTG 1 cut(s) 507
CfoI GCGC 1 cut(s) 1734
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 6 cut(s) 5, 453, 557, 807, 1611, 1727
CviAII CATG 7 cut(s) 125, 551, 689, 728, 1304, 1376, 1973
CviQI GTAC 6 cut(s) 5, 453, 557, 807, 1611, 1727
DdeI CTNAG 6 cut(s) 51, 1184, 1914, 1941, 1986, 2009
DpnI GATC 8 cut(s) 73, 417, 982, 1170, 1313, 1455, 1708, 1907
DpnII GATC 8 cut(s) 71, 415, 980, 1168, 1311, 1453, 1706, 1905
Eam1104I CTCTTC 4 cut(s) 528, 534, 1001, 1250
EarI CTCTTC 4 cut(s) 528, 534, 1001, 1250
Eco130I CCWWGG 1 cut(s) 1407
Eco24I GRGCYC 1 cut(s) 1416
Eco31I GGTCTC 4 cut(s) 952, 1516, 1738, 1989
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 1343
Eco81I CCTNAGG 2 cut(s) 51, 1941
Eco88I CYCGRG 2 cut(s) 60, 421
EcoNI CCTNNNNNAGG 2 cut(s) 708, 1319
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 3 cut(s) 1314, 1490, 1519
EcoT14I CCWWGG 1 cut(s) 1407
EcoT22I ATGCAT 1 cut(s) 1437
EcoT38I GRGCYC 1 cut(s) 1416
ErhI CCWWGG 1 cut(s) 1407
FaeI CATG 7 cut(s) 128, 554, 692, 731, 1307, 1379, 1976
FaqI GGGAC 3 cut(s) 102, 412, 1537
FatI CATG 7 cut(s) 124, 550, 688, 727, 1303, 1375, 1972
FauI CCCGC 1 cut(s) 389
FauNDI CATATG 2 cut(s) 1070, 1723
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 8 cut(s) 1116, 1447, 1968, 1991, 2003, 2006, 2016, 2019
FokI GGATG 7 cut(s) 351, 620, 856, 1117, 1624, 1701, 1750
FriOI GRGCYC 1 cut(s) 1416
Fsp4HI GCNGC 8 cut(s) 1116, 1447, 1968, 1991, 2003, 2006, 2016, 2019
FspBI CTAG 9 cut(s) 69, 78, 144, 186, 198, 572, 647, 1608, 1964
GlaI GCGC 1 cut(s) 1733
GluI GCNGC 8 cut(s) 1116, 1447, 1968, 1991, 2003, 2006, 2016, 2019
GsuI CTGGAG 2 cut(s) 876, 1533
HaeII RGCGCY 1 cut(s) 1735
HaeIII GGCC 1 cut(s) 1030
HapII CCGG 3 cut(s) 880, 1024, 1735
HhaI GCGC 1 cut(s) 1734
Hin1II CATG 7 cut(s) 128, 554, 692, 731, 1307, 1379, 1976
Hin6I GCGC 1 cut(s) 1732
HinP1I GCGC 1 cut(s) 1732
HincII GTYRAC 2 cut(s) 1488, 1576
HindII GTYRAC 2 cut(s) 1488, 1576
HindIII AAGCTT 2 cut(s) 1385, 1427
HinfI GANTC 5 cut(s) 121, 352, 859, 1543, 1959
HpaI GTTAAC 1 cut(s) 1488
HpaII CCGG 3 cut(s) 880, 1024, 1735
HphI GGTGA 3 cut(s) 854, 1071, 1902
Hpy166II GTNNAC 6 cut(s) 158, 946, 1079, 1488, 1576, 1894
Hpy188I TCNGA 8 cut(s) 351, 637, 685, 1045, 1337, 1362, 1762, 2012
Hpy188III TCNNGA 9 cut(s) 69, 97, 668, 893, 1148, 1208, 1481, 1515, 1943
Hpy8I GTNNAC 6 cut(s) 158, 946, 1079, 1488, 1576, 1894
HpyCH4III ACNGT 8 cut(s) 457, 509, 950, 1061, 1100, 1128, 1243, 1264
HpyCH4IV ACGT 2 cut(s) 221, 1040
HpyCH4V TGCA 9 cut(s) 331, 720, 1110, 1435, 1502, 1592, 1655, 1844, 1894
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 149, 1643, 1652, 1973, 1999
HpyF3I CTNAG 6 cut(s) 51, 1184, 1914, 1941, 1986, 2009
HpySE526I ACGT 2 cut(s) 221, 1040
Hsp92II CATG 7 cut(s) 128, 554, 692, 731, 1307, 1379, 1976
HspAI GCGC 1 cut(s) 1732
KpnI GGTACC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 415
KspAI GTTAAC 1 cut(s) 1488
Kzo9I GATC 8 cut(s) 71, 415, 980, 1168, 1311, 1453, 1706, 1905
LmnI GCTCC 3 cut(s) 895, 1411, 1945
Lsp1109I GCAGC 3 cut(s) 1127, 2014, 2017
LweI GCATC 4 cut(s) 878, 1511, 1646, 1723
MaeI CTAG 9 cut(s) 69, 78, 144, 186, 198, 572, 647, 1608, 1964
MaeII ACGT 2 cut(s) 221, 1040
MaeIII GTNAC 5 cut(s) 503, 965, 1055, 1276, 1552
MalI GATC 8 cut(s) 73, 417, 982, 1170, 1313, 1455, 1708, 1907
MbiI CCGCTC 1 cut(s) 396
MboI GATC 8 cut(s) 71, 415, 980, 1168, 1311, 1453, 1706, 1905
MfeI CAATTG 2 cut(s) 1119, 1617
MflI RGATCY 3 cut(s) 1311, 1706, 1905
MhlI GDGCHC 4 cut(s) 831, 1416, 1599, 1896
MlyI GAGTC 1 cut(s) 1968
Mph1103I ATGCAT 1 cut(s) 1437
MroXI GAANNNNTTC 2 cut(s) 484, 1935
MseI TTAA 7 cut(s) 753, 1002, 1020, 1191, 1487, 1668, 1821
MspA1I CMGCKG 1 cut(s) 1990
MspI CCGG 3 cut(s) 880, 1024, 1735
MspR9I CCNGG 3 cut(s) 1316, 1492, 1521
MunI CAATTG 2 cut(s) 1119, 1617
Mva1269I GAATGC 4 cut(s) 722, 1435, 1495, 1594
MvaI CCWGG 3 cut(s) 1316, 1492, 1521
MwoI GCNNNNNNNGC 6 cut(s) 36, 149, 1643, 1652, 1973, 1999
NdeI CATATG 2 cut(s) 1070, 1723
NdeII GATC 8 cut(s) 71, 415, 980, 1168, 1311, 1453, 1706, 1905
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 7 cut(s) 128, 554, 692, 731, 1307, 1379, 1976
NlaIV GGNNCC 8 cut(s) 6, 57, 90, 210, 702, 1313, 1413, 1692
NmuCI GTSAC 1 cut(s) 503
NsiI ATGCAT 1 cut(s) 1437
NspI RCATGY 3 cut(s) 554, 692, 1307
PaeR7I CTCGAG 1 cut(s) 60
PciI ACATGT 3 cut(s) 550, 688, 1303
PctI GAATGC 4 cut(s) 722, 1435, 1495, 1594
PdmI GAANNNNTTC 2 cut(s) 484, 1935
PfeI GAWTC 4 cut(s) 121, 352, 859, 1543
PflFI GACNNNGTC 1 cut(s) 1958
PflMI CCANNNNNTGG 1 cut(s) 1648
PkrI GCNGC 8 cut(s) 1117, 1448, 1969, 1992, 2004, 2007, 2017, 2020
PleI GAGTC 1 cut(s) 1967
PpsI GAGTC 1 cut(s) 1967
PpuMI RGGWCCY 1 cut(s) 89
PscI ACATGT 3 cut(s) 550, 688, 1303
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 3 cut(s) 1314, 1490, 1519
PspGI CCWGG 3 cut(s) 1314, 1490, 1519
PspN4I GGNNCC 8 cut(s) 6, 57, 90, 210, 702, 1313, 1413, 1692
PspPI GGNCC 1 cut(s) 89
PspPPI RGGWCCY 1 cut(s) 89
PspXI VCTCGAGB 1 cut(s) 60
PstNI CAGNNNCTG 1 cut(s) 507
PsuI RGATCY 3 cut(s) 1311, 1706, 1905
PsyI GACNNNGTC 1 cut(s) 1958
RsaI GTAC 6 cut(s) 6, 454, 558, 808, 1612, 1728
RsaNI GTAC 6 cut(s) 5, 453, 557, 807, 1611, 1727
SaqAI TTAA 7 cut(s) 753, 1002, 1020, 1191, 1487, 1668, 1821
SatI GCNGC 8 cut(s) 1116, 1447, 1968, 1991, 2003, 2006, 2016, 2019
Sau3AI GATC 8 cut(s) 71, 415, 980, 1168, 1311, 1453, 1706, 1905
Sau96I GGNCC 1 cut(s) 89
ScaI AGTACT 1 cut(s) 1612
SchI GAGTC 1 cut(s) 1968
ScrFI CCNGG 3 cut(s) 1316, 1492, 1521
SduI GDGCHC 4 cut(s) 831, 1416, 1599, 1896
SfaNI GCATC 4 cut(s) 878, 1511, 1646, 1723
Sfr274I CTCGAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 60, 1479
SmoI CTYRAG 2 cut(s) 60, 1479
SsiI CCGC 4 cut(s) 396, 1446, 1968, 1990
SspMI CTAG 9 cut(s) 69, 78, 144, 186, 198, 572, 647, 1608, 1964
StyD4I CCNGG 3 cut(s) 1314, 1490, 1519
StyI CCWWGG 1 cut(s) 1407
TaaI ACNGT 8 cut(s) 457, 509, 950, 1061, 1100, 1128, 1243, 1264
TaiI ACGT 2 cut(s) 224, 1043
TaqI TCGA 4 cut(s) 61, 798, 1147, 1852
TatI WGTACW 3 cut(s) 556, 1610, 1726
TauI GCSGC 3 cut(s) 1449, 1970, 1993
TfiI GAWTC 4 cut(s) 121, 352, 859, 1543
Tru1I TTAA 7 cut(s) 753, 1002, 1020, 1191, 1487, 1668, 1821
Tru9I TTAA 7 cut(s) 753, 1002, 1020, 1191, 1487, 1668, 1821
TscAI CASTG 3 cut(s) 508, 1599, 1686
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 5 cut(s) 1115, 2002, 2005, 2015, 2018
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 6 cut(s) 113, 315, 716, 914, 1239, 1688
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 3 cut(s) 508, 1599, 1686
Tth111I GACNNNGTC 1 cut(s) 1958
Van91I CCANNNNNTGG 1 cut(s) 1648
VneI GTGCAC 1 cut(s) 1892
VpaK11BI GGWCC 1 cut(s) 89
XagI CCTNNNNNAGG 2 cut(s) 708, 1319
XapI RAATTY 4 cut(s) 723, 781, 1012, 1224
XbaI TCTAGA 1 cut(s) 68
XceI RCATGY 3 cut(s) 554, 692, 1307
XhoI CTCGAG 1 cut(s) 60
XmnI GAANNNNTTC 2 cut(s) 484, 1935
XspI CTAG 9 cut(s) 69, 78, 144, 186, 198, 572, 647, 1608, 1964
ZrmI AGTACT 1 cut(s) 1612
Zsp2I ATGCAT 1 cut(s) 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.