RLG00000003345

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000155
Physical Location & Seq
Reverse (-)
47449373 .. 47451450
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003345

Sequence Viewer

Length: 621 bp
ATGGAGCATAAGAATAAGTCATTGGCAACTGCAACTTCTCAAGCTCAAGGAGCTTCTGCTGACCCCATGGTAGACAGATTGAGTAGTGTTCCATGTGAAATTGCTCACCATATTCTTTCATTGTTATTGCTCAGGGAAGGTTCCATGCATGCCCCATTAGATGGTACTACTTACTTGGGTGTGCATATTAAGAGCTTGACTGATGACCTAGTCCCTGCAATGGTCTCTCTTCTGAGAGGAGTGCCTAATCTGAAGACTTTGTACATCAATTCTTACCCTTCCTTGCACATTGTTAAACCGAAAGCATGTGGTTTTAAGAGGAAATACCGGAAATCCCAAAATCTGGATTGTATTCATCAGCTTGAGGAGGTATCTATAGTACTCTCCACCGGTTATCCTACTGATGCCTTGGAGTTAGCAACATATATTCTTGAGGATGCTCAGAAGTTGAAGAAAATGGTCATATGTTATTTACCTCGCCAGTCCTATATTATAGAGAAGGTAAATAAAAGCAAGAAAATTTCCTCTGCTACTGTTGTCTTTAAGGAAAGGGGAGTGAATGACAATGAAGCAATGGGTGAAAGTTATTATTTTGAGCTATTTCACTTGTACGGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

207

Amino Acids

23.06

Weight (kDa)

8.56

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 161, 343
AccI GTMKAC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 519
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 4 cut(s) 166, 263, 381, 611
AfiI CCNNNNNNNGG 3 cut(s) 161, 220, 343
AgeI ACCGGT 1 cut(s) 389
AgsI TTSAA 1 cut(s) 451
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 5 cut(s) 44, 53, 195, 361, 598
AluI AGCT 5 cut(s) 44, 53, 195, 361, 598
Alw26I GTCTC 1 cut(s) 229
ApoI RAATTY 1 cut(s) 519
AsiGI ACCGGT 1 cut(s) 389
AsuHPI GGTGA 2 cut(s) 98, 590
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BbsI GAAGAC 1 cut(s) 260
BccI CCATC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 375
BmcAI AGTACT 1 cut(s) 381
BmiI GGNNCC 1 cut(s) 142
BmsI GCATC 2 cut(s) 394, 427
BpiI GAAGAC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 4 cut(s) 24, 30, 383, 452
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 66, 408
BsaWI WCCGGW 2 cut(s) 327, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 220, 343
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 481
Bse3DI GCAATG 2 cut(s) 225, 579
BseDI CCNNGG 2 cut(s) 66, 408
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 3 cut(s) 161, 220, 343
BseMI GCAATG 2 cut(s) 225, 579
BseMII CTCAG 3 cut(s) 145, 224, 455
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 2 cut(s) 252, 380
BshTI ACCGGT 1 cut(s) 389
BsiSI CCGG 2 cut(s) 328, 390
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 3 cut(s) 161, 220, 343
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 197
Bso31I GGTCTC 1 cut(s) 229
Bsp1407I TGTACA 1 cut(s) 261
Bsp19I CCATGG 1 cut(s) 66
BspCNI CTCAG 3 cut(s) 144, 225, 454
BspLI GGNNCC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 229
BsrDI GCAATG 2 cut(s) 225, 579
BsrFI RCCGGY 1 cut(s) 389
BsrGI TGTACA 1 cut(s) 261
BsrI ACTGG 1 cut(s) 481
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 66, 408
BssT1I CCWWGG 2 cut(s) 66, 408
Bst4CI ACNGT 1 cut(s) 535
Bst6I CTCTTC 1 cut(s) 234
BstAUI TGTACA 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 3 cut(s) 131, 233, 441
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 442
BstMAI GTCTC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 2 cut(s) 152, 309
BstSFI CTRYAG 1 cut(s) 375
BstV2I GAAGAC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 150
Cfr10I RCCGGY 1 cut(s) 389
Csp6I GTAC 4 cut(s) 165, 262, 380, 610
CspAI ACCGGT 1 cut(s) 389
CviAII CATG 5 cut(s) 67, 93, 145, 149, 306
CviJI RGCY 5 cut(s) 44, 53, 195, 361, 598
CviKI_1 RGCY 5 cut(s) 44, 53, 195, 361, 598
CviQI GTAC 4 cut(s) 165, 262, 380, 610
DdeI CTNAG 3 cut(s) 131, 233, 441
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 66, 408
Eco31I GGTCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 272
EcoT14I CCWWGG 2 cut(s) 66, 408
EcoT22I ATGCAT 1 cut(s) 150
ErhI CCWWGG 2 cut(s) 66, 408
FaeI CATG 5 cut(s) 70, 96, 148, 152, 309
FaqI GGGAC 1 cut(s) 197
FatI CATG 5 cut(s) 66, 92, 144, 148, 305
FauNDI CATATG 1 cut(s) 464
FblI GTMKAC 1 cut(s) 72
FokI GGATG 1 cut(s) 449
FspBI CTAG 1 cut(s) 209
HapII CCGG 2 cut(s) 328, 390
Hin1II CATG 5 cut(s) 70, 96, 148, 152, 309
HpaII CCGG 2 cut(s) 328, 390
HphI GGTGA 2 cut(s) 98, 590
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 4 cut(s) 234, 252, 444, 620
Hpy188III TCNNGA 2 cut(s) 344, 431
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 3 cut(s) 131, 288, 493
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4V TGCA 5 cut(s) 32, 148, 184, 218, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 3 cut(s) 131, 233, 441
Hsp92II CATG 5 cut(s) 70, 96, 148, 152, 309
LmnI GCTCC 2 cut(s) 4, 50
LpnPI CCDG 6 cut(s) 118, 228, 329, 341, 403, 494
LweI GCATC 2 cut(s) 394, 427
MaeI CTAG 1 cut(s) 209
MboII GAAGA 3 cut(s) 221, 265, 463
MluCI AATT 3 cut(s) 99, 268, 519
MnlI CCTC 7 cut(s) 230, 312, 358, 361, 427, 486, 535
Mph1103I ATGCAT 1 cut(s) 150
MseI TTAA 4 cut(s) 189, 294, 315, 543
MspI CCGG 2 cut(s) 328, 390
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 464
NlaIII CATG 5 cut(s) 70, 96, 148, 152, 309
NlaIV GGNNCC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 150
NspI RCATGY 2 cut(s) 152, 309
PaeI GCATGC 1 cut(s) 152
PflFI GACNNNGTC 1 cut(s) 209
PflMI CCANNNNNTGG 2 cut(s) 161, 343
PinAI ACCGGT 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 142
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 4 cut(s) 166, 263, 381, 611
RsaNI GTAC 4 cut(s) 165, 262, 380, 610
SaqAI TTAA 4 cut(s) 189, 294, 315, 543
ScaI AGTACT 1 cut(s) 381
SfaNI GCATC 2 cut(s) 394, 427
SfcI CTRYAG 1 cut(s) 375
SmlI CTYRAG 4 cut(s) 39, 45, 362, 431
SmoI CTYRAG 4 cut(s) 39, 45, 362, 431
SphI GCATGC 1 cut(s) 152
Sse9I AATT 3 cut(s) 99, 268, 519
SspMI CTAG 1 cut(s) 209
StyI CCWWGG 2 cut(s) 66, 408
TaaI ACNGT 1 cut(s) 535
TasI AATT 3 cut(s) 99, 268, 519
TatI WGTACW 2 cut(s) 261, 379
Tru1I TTAA 4 cut(s) 189, 294, 315, 543
Tru9I TTAA 4 cut(s) 189, 294, 315, 543
TspDTI ATGAA 3 cut(s) 108, 344, 582
Tth111I GACNNNGTC 1 cut(s) 209
Van91I CCANNNNNTGG 2 cut(s) 161, 343
XapI RAATTY 1 cut(s) 519
XceI RCATGY 2 cut(s) 152, 309
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 1 cut(s) 381
Zsp2I ATGCAT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.