Rh7CG239200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000155
Physical Location & Seq
Forward (+)
22360494 .. 22361036
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG239200.1

Sequence Viewer

Length: 543 bp
ATGGAACACATGCATAAGTCATTGGCAACTGCAACTTCTCAAGCTCAAGGAGCTTGTGCTGACCCCATGGTAGACAGATTGAGTAGTGTTCCATGCGAAGTTGCTCACCAAATTCTTTCATTGGTCAGTTTTAAAGATCTCACTCGCGTGGGCAGCATGTCCAAAAGATGCAGAGAGTTTTATCTATCAACTCCATCATTGAATTTTTCTTCCTTGTATGGAAACAGGCAGCAGCAATTGCACTTGTTGAATTGTATAGATAGGTATATGATTCGTCGCAGGGATGATAAGATAAAGAGCTTTCATTTTCATTGGTGTTTCTCTGCAGGAATTTCAGAAGAGAGTTTCCGAATGATGACTTGGATCCTTATTGCAGTGAGGTGCAATGTTGAAGTGCTTGATCTTGAGTTGAGGTTGAATACAAAAGATGGGGCAACACCTGAATTGCCACCTTGCATCTACTGCTGTGAATCTTTGAGGTCAATGTTGATCAACACAGAGACAATTCTTAAAGCACCCTCCTTTGCTTGTTCCAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

180

Amino Acids

20.49

Weight (kDa)

8.05

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 72
AccII CGCG 1 cut(s) 147
AclWI GGATC 2 cut(s) 358, 371
AcsI RAATTY 3 cut(s) 111, 202, 330
AfaI GTAC 1 cut(s) 538
AgsI TTSAA 4 cut(s) 202, 250, 392, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 343, 375
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 3 cut(s) 44, 53, 300
AluI AGCT 3 cut(s) 44, 53, 300
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 2 cut(s) 358, 371
ApeKI GCWGC 3 cut(s) 153, 229, 232
ApoI RAATTY 3 cut(s) 111, 202, 330
AsuHPI GGTGA 1 cut(s) 98
BamHI GGATCC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 165, 241, 244
BccI CCATC 2 cut(s) 202, 422
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 494
BfmI CTRYAG 1 cut(s) 324
BglII AGATCT 1 cut(s) 136
BisI GCNGC 3 cut(s) 154, 230, 233
BlsI GCNGC 3 cut(s) 155, 231, 234
BmcAI AGTACT 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 365
BmsI GCATC 2 cut(s) 158, 465
BpuEI CTTGAG 3 cut(s) 24, 30, 425
BsaJI CCNNGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 289
BseMI GCAATG 1 cut(s) 391
BseNI ACTGG 1 cut(s) 534
BseXI GCAGC 3 cut(s) 165, 241, 244
Bsh1236I CGCG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 494
Bsp143I GATC 4 cut(s) 136, 363, 400, 489
Bsp19I CCATGG 1 cut(s) 66
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 365
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 2 cut(s) 358, 371
BsrDI GCAATG 1 cut(s) 391
BsrI ACTGG 1 cut(s) 534
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 4 cut(s) 136, 363, 400, 489
BssT1I CCWWGG 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 2 cut(s) 238, 462
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 4 cut(s) 139, 366, 403, 492
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 4 cut(s) 136, 363, 400, 489
BstMWI GCNNNNNNNGC 4 cut(s) 50, 153, 238, 462
BstNSI RCATGY 2 cut(s) 13, 160
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 165, 241, 244
BstX2I RGATCY 2 cut(s) 136, 363
BstYI RGATCY 2 cut(s) 136, 363
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
Csp6I GTAC 1 cut(s) 537
CviAII CATG 4 cut(s) 10, 67, 93, 157
CviJI RGCY 3 cut(s) 44, 53, 300
CviKI_1 RGCY 3 cut(s) 44, 53, 300
CviQI GTAC 1 cut(s) 537
DpnI GATC 4 cut(s) 138, 365, 402, 491
DpnII GATC 4 cut(s) 136, 363, 400, 489
DraI TTTAAA 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 4 cut(s) 13, 70, 96, 160
FaiI YATR 9 cut(s) 11, 15, 68, 94, 158, 219, 257, 267, 269
FatI CATG 4 cut(s) 9, 66, 92, 156
FbaI TGATCA 1 cut(s) 489
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 154, 230, 233
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 3 cut(s) 154, 230, 233
GluI GCNGC 3 cut(s) 154, 230, 233
Hin1II CATG 4 cut(s) 13, 70, 96, 160
HinfI GANTC 2 cut(s) 271, 470
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 337, 350
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 279
HpyCH4V TGCA 8 cut(s) 13, 32, 171, 241, 326, 374, 384, 456
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 153, 238, 462
Hsp92II CATG 4 cut(s) 13, 70, 96, 160
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 4 cut(s) 136, 363, 400, 489
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 4 cut(s) 211, 265, 312, 453
Lsp1109I GCAGC 3 cut(s) 165, 241, 244
LweI GCATC 2 cut(s) 158, 465
MalI GATC 4 cut(s) 138, 365, 402, 491
MboI GATC 4 cut(s) 136, 363, 400, 489
MboII GAAGA 2 cut(s) 201, 350
MfeI CAATTG 1 cut(s) 236
MflI RGATCY 2 cut(s) 136, 363
MluCI AATT 7 cut(s) 111, 202, 236, 250, 330, 443, 504
MnlI CCTC 4 cut(s) 372, 405, 471, 529
Mph1103I ATGCAT 1 cut(s) 15
MseI TTAA 2 cut(s) 132, 510
MslI CAYNNNNRTG 1 cut(s) 146
MunI CAATTG 1 cut(s) 236
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 4 cut(s) 50, 153, 238, 462
NcoI CCATGG 1 cut(s) 66
NdeII GATC 4 cut(s) 136, 363, 400, 489
NlaIII CATG 4 cut(s) 13, 70, 96, 160
NlaIV GGNNCC 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 15
NspI RCATGY 2 cut(s) 13, 160
OliI CACNNNNGTG 1 cut(s) 146
PfeI GAWTC 2 cut(s) 271, 470
PkrI GCNGC 3 cut(s) 155, 231, 234
PspN4I GGNNCC 1 cut(s) 365
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 2 cut(s) 136, 363
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 2 cut(s) 132, 510
SatI GCNGC 3 cut(s) 154, 230, 233
Sau3AI GATC 4 cut(s) 136, 363, 400, 489
ScaI AGTACT 1 cut(s) 538
SetI ASST 9 cut(s) 46, 55, 266, 302, 383, 416, 442, 454, 482
SfaNI GCATC 2 cut(s) 158, 465
SfcI CTRYAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 3 cut(s) 39, 45, 404
SmoI CTYRAG 3 cut(s) 39, 45, 404
Sse9I AATT 7 cut(s) 111, 202, 236, 250, 330, 443, 504
StyI CCWWGG 1 cut(s) 66
TasI AATT 7 cut(s) 111, 202, 236, 250, 330, 443, 504
TatI WGTACW 1 cut(s) 536
TfiI GAWTC 2 cut(s) 271, 470
Tru1I TTAA 2 cut(s) 132, 510
Tru9I TTAA 2 cut(s) 132, 510
TscAI CASTG 1 cut(s) 381
TseI GCWGC 3 cut(s) 153, 229, 232
TspDTI ATGAA 3 cut(s) 108, 293, 299
TspRI CASTG 1 cut(s) 381
XapI RAATTY 3 cut(s) 111, 202, 330
XceI RCATGY 2 cut(s) 13, 160
XmiI GTMKAC 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 538
Zsp2I ATGCAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.