RLG00000023847

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000155
Physical Location & Seq
Reverse (-)
29130769 .. 29132809
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023847

Sequence Viewer

Length: 861 bp
ATGGATCATAAGCAAAAGTTGATAGCAACTCCAACTTGTCAAGGTCAAGGGGTTCGCGCTGAGACCATGGTTGATAGATTCAGCAATCTTCCAGACGGTGTTGCTCATCAGATTCTCTCACACCTTACCATAACAGACGTTACCCGTTTCGGCTCTGTGTCCAAAAGATGCAGACAACTTCATCTCTCAACTCCTTCATTGAAATTCGAAGGATTTTCGGAGGCGAATTTATGTTCCTTGGACAACAGGTTAGCGCTGTTGAATGCTTTGGATGGTTTCATGATTCGTCGTGGGGATTCAGATCCACTGACTCTCAGCATCTCTGCCGAGAAACTACTAGACCTAGTTTTTGACTGGGGATTTCAAAATTGCAAGAAGGCTCTTTTCCAGAAAGGATCCAGACCAGCACCTTTAGATAATGTTCGTCATCTGTGTATGCATGTCGGGTACATGCTTGATGATGTTGTTCCGGCAATGGTCTCTATCTTGAAAGCAATTCCTAATTTGAGTACTTTGTACATAAAGTCATTTCCAATCTTTGTCCACCTTGGATCTAAATCATCAGGATATAATGTGGCATATTGGAAATTGCTAGACCTTGCTTTTGTTCATCAACTGGAGGAGGTAACCATAGAGCTTCCTAATGGGTCTAATGGAATCGAATTAGCAAGCTATCTGCTCGAGCACGCTAAAAGTTTGAAGAAAATGGTGATTGTACGTTCACCCCAACAATCTAGCGTTGAAAGGAAGTTGCATATAACATATAAGAAGTCCAATCTCAGAGTTGTCTTGGAGGAGGATCAAAAGAGAGGAACTTTGGAGCGAAATAGCAGAAGAGCTTTTACCAGAGAAAGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

287

Amino Acids

32.28

Weight (kDa)

9.34

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 60 2.8e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AclWI GGATC 6 cut(s) 12, 296, 390, 403, 559, 807
AcsI RAATTY 2 cut(s) 203, 226
AfaI GTAC 4 cut(s) 449, 511, 518, 717
AfeI AGCGCT 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 852
AgsI TTSAA 6 cut(s) 202, 262, 365, 490, 700, 743
AluBI AGCT 3 cut(s) 637, 672, 839
AluI AGCT 3 cut(s) 637, 672, 839
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 2 cut(s) 56, 484
AlwI GGATC 6 cut(s) 12, 296, 390, 403, 559, 807
Ama87I CYCGRG 1 cut(s) 680
Aor51HI AGCGCT 1 cut(s) 255
ApoI RAATTY 2 cut(s) 203, 226
ArsI GACNNNNNNTTYG 4 cut(s) 332, 364, 587, 619
AspLEI GCGC 2 cut(s) 59, 256
AsuHPI GGTGA 2 cut(s) 714, 721
AsuII TTCGAA 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 680
BamHI GGATCC 1 cut(s) 395
BarI GAAGNNNNNNTAC 2 cut(s) 826, 858
Bbv12I GWGCWC 1 cut(s) 687
BccI CCATC 1 cut(s) 266
BcoDI GTCTC 2 cut(s) 56, 484
BfaI CTAG 4 cut(s) 338, 344, 593, 735
BfoI RGCGCY 1 cut(s) 257
BmcAI AGTACT 1 cut(s) 511
BmeT110I CYCGRG 1 cut(s) 680
BmiI GGNNCC 1 cut(s) 397
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 2 cut(s) 158, 327
BmuI ACTGGG 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 638
Bpu14I TTCGAA 1 cut(s) 207
BsaBI GATNNNNATC 2 cut(s) 300, 556
BsaI GGTCTC 2 cut(s) 56, 484
BsaJI CCNNGG 3 cut(s) 66, 237, 547
Bsc4I CCNNNNNNNGG 1 cut(s) 852
Bse1I ACTGG 2 cut(s) 359, 621
Bse3DI GCAATG 1 cut(s) 480
Bse8I GATNNNNATC 2 cut(s) 300, 556
BseDI CCNNGG 3 cut(s) 66, 237, 547
BseGI GGATG 1 cut(s) 277
BseJI GATNNNNATC 2 cut(s) 300, 556
BseLI CCNNNNNNNGG 1 cut(s) 852
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 3 cut(s) 51, 328, 793
BseNI ACTGG 2 cut(s) 359, 621
BseRI GAGGAG 2 cut(s) 635, 809
Bsh1236I CGCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 687
BsiHKCI CYCGRG 1 cut(s) 680
BsiSI CCGG 1 cut(s) 470
BslI CCNNNNNNNGG 1 cut(s) 852
BsmAI GTCTC 2 cut(s) 56, 484
BsmI GAATGC 1 cut(s) 268
Bso31I GGTCTC 2 cut(s) 56, 484
BsoBI CYCGRG 1 cut(s) 680
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 687
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 5 cut(s) 4, 301, 395, 551, 799
Bsp19I CCATGG 1 cut(s) 66
BspCNI CTCAG 3 cut(s) 52, 327, 792
BspFNI CGCG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 397
BspPI GGATC 6 cut(s) 12, 296, 390, 403, 559, 807
BspQI GCTCTTC 1 cut(s) 829
BspT104I TTCGAA 1 cut(s) 207
BspTNI GGTCTC 2 cut(s) 56, 484
BsrDI GCAATG 1 cut(s) 480
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 2 cut(s) 359, 621
BssECI CCNNGG 3 cut(s) 66, 237, 547
BssMI GATC 5 cut(s) 4, 301, 395, 551, 799
BssT1I CCWWGG 3 cut(s) 66, 237, 547
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 829
BstAUI TGTACA 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 670, 687
BstDEI CTNAG 3 cut(s) 60, 314, 779
BstDSI CCRYGG 1 cut(s) 66
BstEII GGTNACC 1 cut(s) 625
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 2 cut(s) 59, 256
BstKTI GATC 5 cut(s) 7, 304, 398, 554, 802
BstMAI GTCTC 2 cut(s) 56, 484
BstMBI GATC 5 cut(s) 4, 301, 395, 551, 799
BstNSI RCATGY 2 cut(s) 443, 454
BstPI GGTNACC 1 cut(s) 625
BstUI CGCG 1 cut(s) 57
BstX2I RGATCY 3 cut(s) 301, 395, 551
BstYI RGATCY 3 cut(s) 301, 395, 551
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 2 cut(s) 670, 687
CciI TCATGA 1 cut(s) 279
CfoI GCGC 2 cut(s) 59, 256
Csp6I GTAC 4 cut(s) 448, 510, 517, 716
CviAII CATG 4 cut(s) 67, 280, 440, 451
CviJI RGCY 5 cut(s) 153, 380, 637, 672, 839
CviKI_1 RGCY 5 cut(s) 153, 380, 637, 672, 839
CviQI GTAC 4 cut(s) 448, 510, 517, 716
DdeI CTNAG 3 cut(s) 60, 314, 779
DpnI GATC 5 cut(s) 6, 303, 397, 553, 801
DpnII GATC 5 cut(s) 4, 301, 395, 551, 799
Eam1104I CTCTTC 1 cut(s) 829
EarI CTCTTC 1 cut(s) 829
Eco130I CCWWGG 3 cut(s) 66, 237, 547
Eco31I GGTCTC 2 cut(s) 56, 484
Eco47III AGCGCT 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 680
Eco91I GGTNACC 1 cut(s) 625
EcoO65I GGTNACC 1 cut(s) 625
EcoT14I CCWWGG 3 cut(s) 66, 237, 547
EcoT22I ATGCAT 1 cut(s) 441
ErhI CCWWGG 3 cut(s) 66, 237, 547
FaeI CATG 4 cut(s) 70, 283, 443, 454
FatI CATG 4 cut(s) 66, 279, 439, 450
FokI GGATG 1 cut(s) 284
FspBI CTAG 4 cut(s) 338, 344, 593, 735
GlaI GCGC 2 cut(s) 58, 255
GsuI CTGGAG 1 cut(s) 638
HaeII RGCGCY 1 cut(s) 257
HapII CCGG 1 cut(s) 470
HhaI GCGC 2 cut(s) 59, 256
Hin1II CATG 4 cut(s) 70, 283, 443, 454
Hin6I GCGC 2 cut(s) 57, 254
HinP1I GCGC 2 cut(s) 57, 254
HinfI GANTC 6 cut(s) 78, 112, 283, 296, 310, 657
HpaII CCGG 1 cut(s) 470
HphI GGTGA 2 cut(s) 714, 721
Hpy166II GTNNAC 2 cut(s) 544, 722
Hpy188I TCNGA 4 cut(s) 111, 220, 301, 782
Hpy188III TCNNGA 6 cut(s) 92, 280, 388, 399, 487, 564
Hpy8I GTNNAC 2 cut(s) 544, 722
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 3 cut(s) 203, 204, 370
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 2 cut(s) 138, 718
HpyCH4V TGCA 4 cut(s) 171, 372, 439, 754
HpyF3I CTNAG 3 cut(s) 60, 314, 779
HpySE526I ACGT 2 cut(s) 138, 718
Hsp92II CATG 4 cut(s) 70, 283, 443, 454
HspAI GCGC 2 cut(s) 57, 254
Kzo9I GATC 5 cut(s) 4, 301, 395, 551, 799
LguI GCTCTTC 1 cut(s) 829
LmnI GCTCC 1 cut(s) 820
LpnPI CCDG 9 cut(s) 105, 232, 340, 401, 412, 417, 483, 549, 602
LweI GCATC 2 cut(s) 158, 327
MaeI CTAG 4 cut(s) 338, 344, 593, 735
MaeII ACGT 2 cut(s) 138, 718
MaeIII GTNAC 2 cut(s) 139, 625
MalI GATC 5 cut(s) 6, 303, 397, 553, 801
MboI GATC 5 cut(s) 4, 301, 395, 551, 799
MboII GAAGA 3 cut(s) 80, 712, 846
MflI RGATCY 3 cut(s) 301, 395, 551
MhlI GDGCHC 1 cut(s) 687
MluCI AATT 7 cut(s) 203, 226, 367, 495, 502, 587, 662
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 6 cut(s) 214, 613, 616, 787, 790, 803
Mph1103I ATGCAT 1 cut(s) 441
MspI CCGG 1 cut(s) 470
Mva1269I GAATGC 1 cut(s) 268
MvnI CGCG 1 cut(s) 57
NcoI CCATGG 1 cut(s) 66
NdeII GATC 5 cut(s) 4, 301, 395, 551, 799
NlaIII CATG 4 cut(s) 70, 283, 443, 454
NlaIV GGNNCC 1 cut(s) 397
NmeAIII GCCGAG 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 441
NspI RCATGY 2 cut(s) 443, 454
NspV TTCGAA 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 680
PagI TCATGA 1 cut(s) 279
PciSI GCTCTTC 1 cut(s) 829
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 5 cut(s) 78, 112, 283, 296, 657
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PspEI GGTNACC 1 cut(s) 625
PspN4I GGNNCC 1 cut(s) 397
PspXI VCTCGAGB 1 cut(s) 680
PsuI RGATCY 3 cut(s) 301, 395, 551
RsaI GTAC 4 cut(s) 449, 511, 518, 717
RsaNI GTAC 4 cut(s) 448, 510, 517, 716
SapI GCTCTTC 1 cut(s) 829
Sau3AI GATC 5 cut(s) 4, 301, 395, 551, 799
ScaI AGTACT 1 cut(s) 511
SchI GAGTC 1 cut(s) 304
SduI GDGCHC 1 cut(s) 687
SfaNI GCATC 2 cut(s) 158, 327
Sfr274I CTCGAG 1 cut(s) 680
SfuI TTCGAA 1 cut(s) 207
SlaI CTCGAG 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 7 cut(s) 203, 226, 367, 495, 502, 587, 662
SspMI CTAG 4 cut(s) 338, 344, 593, 735
StyI CCWWGG 3 cut(s) 66, 237, 547
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 2 cut(s) 141, 721
TaqI TCGA 3 cut(s) 207, 660, 681
TasI AATT 7 cut(s) 203, 226, 367, 495, 502, 587, 662
TatI WGTACW 2 cut(s) 509, 516
TfiI GAWTC 5 cut(s) 78, 112, 283, 296, 657
TscAI CASTG 1 cut(s) 312
TspDTI ATGAA 4 cut(s) 170, 186, 268, 599
TspRI CASTG 1 cut(s) 312
XapI RAATTY 2 cut(s) 203, 226
XceI RCATGY 2 cut(s) 443, 454
XhoI CTCGAG 1 cut(s) 680
XspI CTAG 4 cut(s) 338, 344, 593, 735
ZrmI AGTACT 1 cut(s) 511
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.