Rorug03G0137200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000155
Physical Location & Seq
Forward (+)
11274760 .. 11275283
524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0137200.1

Sequence Viewer

Length: 399 bp
ATGGCTTCAATGTCTTCTTCACTTCTGACTATTCTTTCTGCAGAAACACTGAAGCAACCAACGTTAGTTGGTAACCCCTTAGCGGGGTCAAGAGCTCTATTATGGAAGAGGACTGAGAAGAACAAGAAGCGAGCATTGACGGTAGTTGCAGTGGTTGGAGATGTATCCGCCGATAGCACACCATACTTGATTGGTGGTGCTGCTCTTGTGGCTCTGGTTGGAACTGCCTTCCCAATCCTCTTCTCCCGCAAGGATACATGTCCTGAATGCGATGGGGCAGGGTTCGTTCGGAAGTCGGGGGTGACCTTGAGAGCCAATGCAGCACGGAAAGACCAGGCTCAGATTGTGTGTGCTAATTGCAGTGGCCTGGGCAAGCTCAACCAAGTTGACAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

132

Amino Acids

13.75

Weight (kDa)

9.69

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 83, 168, 247
AclI AACGTT 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 71
AfiI CCNNNNNNNGG 3 cut(s) 82, 83, 84
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 1 cut(s) 9
AjnI CCWGG 2 cut(s) 333, 366
AluBI AGCT 2 cut(s) 95, 376
AluI AGCT 2 cut(s) 95, 376
Alw21I GWGCWC 1 cut(s) 97
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 2 cut(s) 200, 320
AsuHPI GGTGA 1 cut(s) 313
BanII GRGCYC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 2 cut(s) 187, 332
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 2 cut(s) 335, 368
BciVI GTATCC 2 cut(s) 175, 247
BfmI CTRYAG 1 cut(s) 39
BfuI GTATCC 2 cut(s) 175, 247
BisI GCNGC 2 cut(s) 201, 321
BlsI GCNGC 2 cut(s) 202, 322
Bme1390I CCNGG 2 cut(s) 335, 368
BmrFI CCNGG 2 cut(s) 335, 368
BpiI GAAGAC 1 cut(s) 6
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 367
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 83, 84
BseBI CCWGG 2 cut(s) 335, 368
BseDI CCNNGG 1 cut(s) 367
BseLI CCNNNNNNNGG 3 cut(s) 82, 83, 84
BseMII CTCAG 2 cut(s) 105, 353
BseXI GCAGC 2 cut(s) 187, 332
BshFI GGCC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 82, 83, 84
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 97
BspACI CCGC 3 cut(s) 83, 168, 247
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 2 cut(s) 106, 352
BspMAI CTGCAG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 367
Bst2UI CCWGG 2 cut(s) 335, 368
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 101, 245
BstC8I GCNNGC 2 cut(s) 132, 374
BstDEI CTNAG 4 cut(s) 79, 114, 339, 396
BstEII GGTNACC 2 cut(s) 71, 301
BstMWI GCNNNNNNNGC 2 cut(s) 209, 320
BstNI CCWGG 2 cut(s) 335, 368
BstNSI RCATGY 1 cut(s) 261
BstPI GGTNACC 2 cut(s) 71, 301
BstSCI CCNGG 2 cut(s) 333, 366
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 187, 332
BstV2I GAAGAC 1 cut(s) 6
BsuI GTATCC 2 cut(s) 175, 247
BsuRI GGCC 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 285
BtsI GCAGTG 2 cut(s) 156, 367
BtsIMutI CAGTG 3 cut(s) 47, 156, 367
Cac8I GCNNGC 2 cut(s) 132, 374
CviAII CATG 1 cut(s) 258
CviJI RGCY 7 cut(s) 5, 95, 212, 314, 338, 366, 376
CviKI_1 RGCY 7 cut(s) 5, 95, 212, 314, 338, 366, 376
DdeI CTNAG 4 cut(s) 79, 114, 339, 396
Eam1104I CTCTTC 2 cut(s) 101, 245
EarI CTCTTC 2 cut(s) 101, 245
EciI GGCGGA 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 71
Eco91I GGTNACC 2 cut(s) 71, 301
EcoICRI GAGCTC 1 cut(s) 95
EcoO65I GGTNACC 2 cut(s) 71, 301
EcoRII CCWGG 2 cut(s) 333, 366
EcoT38I GRGCYC 1 cut(s) 97
FaeI CATG 1 cut(s) 261
FaiI YATR 3 cut(s) 103, 184, 259
FatI CATG 1 cut(s) 257
FauI CCCGC 2 cut(s) 76, 254
Fnu4HI GCNGC 2 cut(s) 201, 321
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 2 cut(s) 201, 321
GluI GCNGC 2 cut(s) 201, 321
HaeIII GGCC 1 cut(s) 366
Hin1II CATG 1 cut(s) 261
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 3 cut(s) 27, 291, 342
Hpy188III TCNNGA 2 cut(s) 90, 263
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 4 cut(s) 41, 149, 320, 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 320
HpyF3I CTNAG 4 cut(s) 79, 114, 339, 396
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 1 cut(s) 261
LpnPI CCDG 7 cut(s) 200, 264, 276, 320, 347, 353, 380
Lsp1109I GCAGC 2 cut(s) 187, 332
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 2 cut(s) 71, 301
MboII GAAGA 5 cut(s) 6, 9, 118, 130, 232
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 1 cut(s) 355
MmeI TCCRAC 2 cut(s) 136, 199
MnlI CCTC 2 cut(s) 102, 248
MspR9I CCNGG 2 cut(s) 335, 368
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 2 cut(s) 335, 368
MwoI GCNNNNNNNGC 2 cut(s) 209, 320
NlaIII CATG 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 301
NspI RCATGY 1 cut(s) 261
PciI ACATGT 1 cut(s) 257
PctI GAATGC 1 cut(s) 272
PkrI GCNGC 2 cut(s) 202, 322
PscI ACATGT 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 97
Psp1406I AACGTT 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 333, 366
PspEI GGTNACC 2 cut(s) 71, 301
PspGI CCWGG 2 cut(s) 333, 366
PstI CTGCAG 1 cut(s) 43
SacI GAGCTC 1 cut(s) 97
SatI GCNGC 2 cut(s) 201, 321
ScrFI CCNGG 2 cut(s) 335, 368
SduI GDGCHC 1 cut(s) 97
SetI ASST 4 cut(s) 65, 97, 308, 378
SfcI CTRYAG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 1 cut(s) 355
SsiI CCGC 3 cut(s) 83, 168, 247
SstI GAGCTC 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 333, 366
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 65
TasI AATT 1 cut(s) 355
TscAI CASTG 3 cut(s) 54, 156, 367
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 2 cut(s) 200, 320
Tsp45I GTSAC 1 cut(s) 301
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 3 cut(s) 54, 156, 367
XceI RCATGY 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.