Prupe.7G107300_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000155
Physical Location & Seq
Reverse (-)
13580503 .. 13582120
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G107300.1

Sequence Viewer

Length: 588 bp
ATGAGAAGCCGACAGGTCACCCACCACAGATGTGAACTCAAAATGACTAGCGCTAAAAAAGAAAAAGATATAATAGACAGGTTCAGTAATCTTCCAGATGAAGTTTCTCATCAAATTCTTTCTTTTTTCAATTTTAAAGAACTCATTCGAGTAGGCAGTGTGTCCAAAAGGTTCAGAGGGCTTTATCTCTCATCCCTGTCATTGGATTTTTGGTCATGGTATTCAAACAAGCAGGAGCAGTTAAACATGCTGAATTCTTTTGAAAGGTTCTTGATTCATTGCGGGGATAACAAGATACAGCACTTTCGCATATGTTTGAATCTATGTTCAACCTTGTGTGATGAGATTTTCCGAGTGATCACATGGATCCACATTGCAGCAAGGTGTAATGTTGAAGGGCTTGATCTTCAATTAGAAATAACGAAAACAGATATGCCTATGATGGAATTGCCATCTTGCATCTTTCTTTGTGGATCTTTGAGGTCTCTATTGGTGGACTTGTATAAAGTTCTTAAAGTGCCCTCCTTTTCCGGTTCCACTAATCTCCAACACTTAAGCTTGAGTAGTGTTAGAATGGGTTTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

196

Amino Acids

22.7

Weight (kDa)

8.64

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 282
AclWI GGATC 3 cut(s) 361, 374, 481
AcsI RAATTY 2 cut(s) 114, 253
AfeI AGCGCT 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 202
AflII CTTAAG 1 cut(s) 553
AgsI TTSAA 7 cut(s) 130, 225, 263, 319, 330, 395, 410
AleI CACNNNNGTG 1 cut(s) 30
AluBI AGCT 1 cut(s) 558
AluI AGCT 1 cut(s) 558
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 3 cut(s) 361, 374, 481
Aor51HI AGCGCT 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 2 cut(s) 114, 253
Asp700I GAANNNNTTC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 522
BamHI GGATCC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 389
BccI CCATC 2 cut(s) 436, 460
BclI TGATCA 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 54
BfrI CTTAAG 1 cut(s) 553
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
BmiI GGNNCC 2 cut(s) 368, 535
BmsI GCATC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 580
BsaI GGTCTC 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 530
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse3DI GCAATG 2 cut(s) 277, 372
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMI GCAATG 2 cut(s) 277, 372
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 1 cut(s) 389
BsiSI CCGG 1 cut(s) 531
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 489
Bso31I GGTCTC 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 4 cut(s) 357, 366, 403, 473
BspACI CCGC 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 368, 535
BspPI GGATC 3 cut(s) 361, 374, 481
BspTI CTTAAG 1 cut(s) 553
BspTNI GGTCTC 1 cut(s) 489
BsrDI GCAATG 2 cut(s) 277, 372
BssMI GATC 4 cut(s) 357, 366, 403, 473
BstAFI CTTAAG 1 cut(s) 553
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 4 cut(s) 360, 369, 406, 476
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 4 cut(s) 357, 366, 403, 473
BstNSI RCATGY 1 cut(s) 250
BstPI GGTNACC 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 389
BstX2I RGATCY 2 cut(s) 366, 473
BstYI RGATCY 2 cut(s) 366, 473
BtsCI GGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 163
CfoI GCGC 1 cut(s) 53
CviAII CATG 3 cut(s) 216, 247, 363
CviJI RGCY 4 cut(s) 9, 181, 400, 558
CviKI_1 RGCY 4 cut(s) 9, 181, 400, 558
DpnI GATC 4 cut(s) 359, 368, 405, 475
DpnII GATC 4 cut(s) 357, 366, 403, 473
DraI TTTAAA 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 489
Eco47III AGCGCT 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 16
EcoRI GAATTC 1 cut(s) 253
FaeI CATG 3 cut(s) 219, 250, 366
FatI CATG 3 cut(s) 215, 246, 362
FauI CCCGC 1 cut(s) 275
FauNDI CATATG 1 cut(s) 311
FbaI TGATCA 1 cut(s) 357
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 378
HaeII RGCGCY 1 cut(s) 54
HapII CCGG 1 cut(s) 531
HhaI GCGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 219, 250, 366
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 556
HinfI GANTC 2 cut(s) 274, 319
HpaII CCGG 1 cut(s) 531
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 35, 496
Hpy188I TCNGA 2 cut(s) 176, 353
Hpy188III TCNNGA 2 cut(s) 95, 271
Hpy8I GTNNAC 2 cut(s) 35, 496
HpyAV CCTTC 1 cut(s) 389
HpyCH4V TGCA 2 cut(s) 377, 459
Hsp92II CATG 3 cut(s) 219, 250, 366
HspAI GCGC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 4 cut(s) 357, 366, 403, 473
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 5 cut(s) 64, 108, 209, 218, 544
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 1 cut(s) 468
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 16
MalI GATC 4 cut(s) 359, 368, 405, 475
MboI GATC 4 cut(s) 357, 366, 403, 473
MboII GAAGA 2 cut(s) 83, 398
MflI RGATCY 2 cut(s) 366, 473
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 5 cut(s) 114, 130, 253, 410, 446
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 3 cut(s) 170, 474, 532
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 4 cut(s) 135, 242, 513, 554
MslI CAYNNNNRTG 1 cut(s) 30
MspCI CTTAAG 1 cut(s) 553
MspI CCGG 1 cut(s) 531
NdeI CATATG 1 cut(s) 311
NdeII GATC 4 cut(s) 357, 366, 403, 473
NlaIII CATG 3 cut(s) 219, 250, 366
NlaIV GGNNCC 2 cut(s) 368, 535
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 250
OliI CACNNNNGTG 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 274, 319
PkrI GCNGC 1 cut(s) 379
PspEI GGTNACC 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 368, 535
PsuI RGATCY 2 cut(s) 366, 473
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 4 cut(s) 135, 242, 513, 554
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 4 cut(s) 357, 366, 403, 473
SduI GDGCHC 1 cut(s) 522
SetI ASST 8 cut(s) 18, 83, 173, 269, 335, 386, 485, 560
SfaNI GCATC 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 2 cut(s) 553, 559
SmoI CTYRAG 2 cut(s) 553, 559
Sse9I AATT 5 cut(s) 114, 130, 253, 410, 446
SsiI CCGC 1 cut(s) 282
SspMI CTAG 1 cut(s) 48
TaqI TCGA 1 cut(s) 148
TasI AATT 5 cut(s) 114, 130, 253, 410, 446
TfiI GAWTC 2 cut(s) 274, 319
Tru1I TTAA 4 cut(s) 135, 242, 513, 554
Tru9I TTAA 4 cut(s) 135, 242, 513, 554
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 114, 266
TspRI CASTG 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 553
XapI RAATTY 2 cut(s) 114, 253
XceI RCATGY 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.