Rw3G017300

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000155
Physical Location & Seq
Forward (+)
18717394 .. 18725052
7659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017300.1

Sequence Viewer

Length: 1383 bp
ATGGAAGACAGGGGGAAGCGTAAGTTGTTGGCCACTGCAAGTTGTCAAGGCCAAGCAGTTAGAGCTGTTACCGAGGGTTTGATTGATAGGCTGAGTAATCTTCCAGACCATGTTGCTCATCACATTCTGTCATTCCTTGCTATTGAAGACCTTACTCGTTTCGGATGTGTGTCCAAGGGATGTGGTGAATTGTATTTGTCAGCTCCGTCGTTGAATTTTAAGGGATTTTCCTGCAAGAACTTGGTGACTTATGATAAGAGGTTGAGGTTGTGGAGTTATTTGGATAGGTACTTGTTTCATCGTGGGGGTAATAGGAGAGCGCGCTTTCATTTTCACTGGAACCTTGATACACACCAATCCTTGATATTAACATCGAGAATTCGTGTCTGGAGGCACCGCCCTTACCACATCTTTCTGTGTGGATCTTTAAAATCTCTAGTGGTCGAGATGTATTGTAAAATTTCTAAAGCACCCTCACTTGCTTCTCTCTCCAATCTGGAATGCTTGAAGTTGCAAGATGTTATCATACTAGATGAGGGGTGTTTCAAATGGATCTCATGTTCATGCAAATGCATTAAGGAATTGTCTCTTATACATGTTCATGGGAATGGGGGAATGCATTTCACTATTGAAAGCTCATCTTTGGAATCATTGTGCATTAAGTGGGTATATGGTATGTTCCATCTTAACATCTCAGGTCAGAAGCTTAGAAAAATAATTATTAACTGGATTTTTGCATATCGTACGGACAGCCCACATACAGTTATATGTTTGAGGAATCAACTTAATCTGGGAAGATTAGAAAGCTTAGAAGAAGCTGAGATTTGTCTTCTGAATCATGATGACTTTGTCATCGTATCTGAGGTTCTTTGCTGCTTATGCAGTGCTAAAGTTCTTATACTGAACAAAGAGATTACAATGGCTCTGTTAAAGGGAGGTTCCATGCCATTGCTAAAGAATGTTTGTTATTTGAGTATTCATATTGAAGGCTTTCTACATATTCTAGTCCCTGCAATGACCTCTCTTTTGGGAGGAATGTCTAAGTTAAGTACGTTGATCATAAAGTCTAACTCATTCTTCCGTGGTCCTAAAGCTGATTGTCGTGGTTTTAACATGGGATACTGGAAGCTGCAAAACACTGCTTTTATTTATCAGCTCAAGGAGGTTAGCATGGAGCTTTCCCATGGGTCTAATGGAATCGAGTTTGCTAGATATATCCTTGATCATGCCCAGAATTTGAATAAATTGACAATTCTGCATTCACCACAGCAATCTAATGCTACGAGTAAGTTAAAGAAAAGCAAGATGGCTTCCAACATCACACTTGACTTTCAGGAAGATCAAAGAAGAGGACCTCAGAAGCGAAGAGGAAGAAGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

460

Amino Acids

52.44

Weight (kDa)

9.39

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 393
AccII CGCG 1 cut(s) 322
AciI CCGC 1 cut(s) 397
AclWI GGATC 2 cut(s) 430, 560
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 4 cut(s) 214, 378, 459, 1234
AfaI GTAC 3 cut(s) 290, 745, 1051
AflIII ACRYGT 1 cut(s) 595
AgsI TTSAA 7 cut(s) 146, 214, 508, 547, 632, 986, 1240
AloI GAACNNNNNNTCC 2 cut(s) 544, 576
Alw26I GTCTC 1 cut(s) 591
AlwI GGATC 2 cut(s) 430, 560
AoxI GGCC 2 cut(s) 30, 49
ApeKI GCWGC 2 cut(s) 873, 1129
ApoI RAATTY 4 cut(s) 214, 378, 459, 1234
ArsI GACNNNNNNTTYG 2 cut(s) 1009, 1041
Asp700I GAANNNNTTC 1 cut(s) 990
AspLEI GCGC 2 cut(s) 322, 324
AspS9I GGNCC 2 cut(s) 1085, 1352
AsuHPI GGTGA 3 cut(s) 197, 256, 1254
AvaII GGWCC 2 cut(s) 1085, 1352
BalI TGGCCA 1 cut(s) 32
BanI GGYRCC 1 cut(s) 393
BarI GAAGNNNNNNTAC 2 cut(s) 978, 1010
BbsI GAAGAC 3 cut(s) 12, 153, 821
BbvI GCAGC 2 cut(s) 860, 1116
BccI CCATC 2 cut(s) 690, 1300
BciVI GTATCC 1 cut(s) 1112
BclI TGATCA 2 cut(s) 1056, 1222
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 4 cut(s) 437, 530, 1004, 1209
BfuI GTATCC 1 cut(s) 1112
BisI GCNGC 2 cut(s) 874, 1130
BlsI GCNGC 2 cut(s) 875, 1131
Bme18I GGWCC 2 cut(s) 1085, 1352
BmgT120I GGNCC 2 cut(s) 1085, 1352
BmiI GGNNCC 3 cut(s) 341, 395, 940
BpiI GAAGAC 3 cut(s) 12, 153, 821
BpmI CTGGAG 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 1142
BsaJI CCNNGG 4 cut(s) 72, 174, 1081, 1183
Bse1I ACTGG 3 cut(s) 341, 731, 1127
Bse3DI GCAATG 2 cut(s) 947, 1020
BseDI CCNNGG 4 cut(s) 72, 174, 1081, 1183
BseGI GGATG 2 cut(s) 170, 185
BseMI GCAATG 2 cut(s) 947, 1020
BseMII CTCAG 5 cut(s) 83, 708, 810, 852, 1370
BseNI ACTGG 3 cut(s) 341, 731, 1127
BsePI GCGCGC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 860, 1116
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 2 cut(s) 32, 51
BshNI GGYRCC 1 cut(s) 393
BsiWI CGTACG 1 cut(s) 743
BslFI GGGAC 1 cut(s) 992
BsmAI GTCTC 1 cut(s) 591
BsmFI GGGAC 1 cut(s) 992
BsmI GAATGC 3 cut(s) 506, 621, 1258
BsnI GGCC 2 cut(s) 32, 51
Bsp143I GATC 5 cut(s) 422, 552, 1056, 1222, 1339
Bsp19I CCATGG 1 cut(s) 1183
BspACI CCGC 1 cut(s) 397
BspANI GGCC 2 cut(s) 32, 51
BspCNI CTCAG 5 cut(s) 84, 707, 811, 853, 1369
BspFNI CGCG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 3 cut(s) 341, 395, 940
BspPI GGATC 2 cut(s) 430, 560
BspT107I GGYRCC 1 cut(s) 393
BsrDI GCAATG 2 cut(s) 947, 1020
BsrI ACTGG 3 cut(s) 341, 731, 1127
BssECI CCNNGG 4 cut(s) 72, 174, 1081, 1183
BssHII GCGCGC 1 cut(s) 320
BssMI GATC 5 cut(s) 422, 552, 1056, 1222, 1339
BssT1I CCWWGG 2 cut(s) 174, 1183
Bst4CI ACNGT 1 cut(s) 763
Bst6I CTCTTC 2 cut(s) 1342, 1360
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 8 cut(s) 92, 694, 707, 808, 819, 861, 1041, 1356
BstDSI CCRYGG 2 cut(s) 1081, 1183
BstF5I GGATG 2 cut(s) 170, 185
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 2 cut(s) 322, 324
BstKTI GATC 5 cut(s) 425, 555, 1059, 1225, 1342
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 5 cut(s) 422, 552, 1056, 1222, 1339
BstMWI GCNNNNNNNGC 2 cut(s) 62, 879
BstNSI RCATGY 1 cut(s) 599
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 860, 1116
BstV2I GAAGAC 3 cut(s) 12, 153, 821
BstX2I RGATCY 2 cut(s) 422, 552
BstYI RGATCY 2 cut(s) 422, 552
BsuI GTATCC 1 cut(s) 1112
BsuRI GGCC 2 cut(s) 32, 51
BtgI CCRYGG 2 cut(s) 1081, 1183
BtsCI GGATG 2 cut(s) 170, 185
BtsI GCAGTG 3 cut(s) 33, 889, 1137
BtsIMutI CAGTG 4 cut(s) 33, 334, 889, 1137
Cac8I GCNNGC 1 cut(s) 322
CciI TCATGA 1 cut(s) 838
CfoI GCGC 2 cut(s) 322, 324
Cfr13I GGNCC 2 cut(s) 1085, 1352
Csp6I GTAC 3 cut(s) 289, 744, 1050
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviQI GTAC 3 cut(s) 289, 744, 1050
DdeI CTNAG 8 cut(s) 92, 694, 707, 808, 819, 861, 1041, 1356
DpnI GATC 5 cut(s) 424, 554, 1058, 1224, 1341
DpnII GATC 5 cut(s) 422, 552, 1056, 1222, 1339
DraI TTTAAA 1 cut(s) 429
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 1342, 1360
EarI CTCTTC 2 cut(s) 1342, 1360
Eco130I CCWWGG 2 cut(s) 174, 1183
Eco47I GGWCC 2 cut(s) 1085, 1352
EcoO109I RGGNCCY 1 cut(s) 1352
EcoRI GAATTC 1 cut(s) 378
EcoT14I CCWWGG 2 cut(s) 174, 1183
EcoT22I ATGCAT 2 cut(s) 575, 621
ErhI CCWWGG 2 cut(s) 174, 1183
FalI AAGNNNNNCTT 2 cut(s) 625, 657
FaqI GGGAC 1 cut(s) 992
FbaI TGATCA 2 cut(s) 1056, 1222
Fnu4HI GCNGC 2 cut(s) 874, 1130
FokI GGATG 2 cut(s) 177, 192
Fsp4HI GCNGC 2 cut(s) 874, 1130
FspBI CTAG 4 cut(s) 437, 530, 1004, 1209
GlaI GCGC 2 cut(s) 321, 323
GluI GCNGC 2 cut(s) 874, 1130
GsuI CTGGAG 1 cut(s) 409
HaeIII GGCC 2 cut(s) 32, 51
HhaI GCGC 2 cut(s) 322, 324
Hin6I GCGC 2 cut(s) 320, 322
HinP1I GCGC 2 cut(s) 320, 322
HindIII AAGCTT 2 cut(s) 704, 805
HinfI GANTC 4 cut(s) 647, 778, 835, 1197
HphI GGTGA 3 cut(s) 197, 256, 1254
Hpy188I TCNGA 5 cut(s) 164, 702, 834, 862, 1359
Hpy188III TCNNGA 7 cut(s) 104, 375, 388, 445, 497, 839, 1334
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 980, 1368
HpyCH4III ACNGT 1 cut(s) 763
HpyCH4IV ACGT 1 cut(s) 1052
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 879
HpyF3I CTNAG 8 cut(s) 92, 694, 707, 808, 819, 861, 1041, 1356
HpySE526I ACGT 1 cut(s) 1052
HspAI GCGC 2 cut(s) 320, 322
Ksp22I TGATCA 2 cut(s) 1056, 1222
Kzo9I GATC 5 cut(s) 422, 552, 1056, 1222, 1339
LmnI GCTCC 2 cut(s) 208, 1174
Lsp1109I GCAGC 2 cut(s) 860, 1116
MaeI CTAG 4 cut(s) 437, 530, 1004, 1209
MaeII ACGT 1 cut(s) 1052
MaeIII GTNAC 2 cut(s) 67, 244
MalI GATC 5 cut(s) 424, 554, 1058, 1224, 1341
MboI GATC 5 cut(s) 422, 552, 1056, 1222, 1339
MflI RGATCY 2 cut(s) 422, 552
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 9 cut(s) 188, 214, 378, 459, 581, 717, 1234, 1244, 1251
MluNI TGGCCA 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 1338
Mox20I TGGCCA 1 cut(s) 32
Mph1103I ATGCAT 2 cut(s) 575, 621
MroXI GAANNNNTTC 1 cut(s) 990
MscI TGGCCA 1 cut(s) 32
MslI CAYNNNNRTG 4 cut(s) 562, 568, 600, 606
Msp20I TGGCCA 1 cut(s) 32
Mva1269I GAATGC 3 cut(s) 506, 621, 1258
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 62, 879
NcoI CCATGG 1 cut(s) 1183
NdeII GATC 5 cut(s) 422, 552, 1056, 1222, 1339
NlaIV GGNNCC 3 cut(s) 341, 395, 940
NmuCI GTSAC 1 cut(s) 244
NsiI ATGCAT 2 cut(s) 575, 621
NspI RCATGY 1 cut(s) 599
PagI TCATGA 1 cut(s) 838
PauI GCGCGC 1 cut(s) 320
PciI ACATGT 1 cut(s) 595
PctI GAATGC 3 cut(s) 506, 621, 1258
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 4 cut(s) 647, 778, 835, 1197
Pfl23II CGTACG 1 cut(s) 743
PflFI GACNNNGTC 1 cut(s) 848
PkrI GCNGC 2 cut(s) 875, 1131
PpuMI RGGWCCY 1 cut(s) 1352
PscI ACATGT 1 cut(s) 595
Psp5II RGGWCCY 1 cut(s) 1352
PspLI CGTACG 1 cut(s) 743
PspN4I GGNNCC 3 cut(s) 341, 395, 940
PspPI GGNCC 2 cut(s) 1085, 1352
PspPPI RGGWCCY 1 cut(s) 1352
PsrI GAACNNNNNNTAC 2 cut(s) 849, 881
PsuI RGATCY 2 cut(s) 422, 552
PsyI GACNNNGTC 1 cut(s) 848
PteI GCGCGC 1 cut(s) 320
RsaI GTAC 3 cut(s) 290, 745, 1051
RsaNI GTAC 3 cut(s) 289, 744, 1050
RseI CAYNNNNRTG 4 cut(s) 562, 568, 600, 606
SatI GCNGC 2 cut(s) 874, 1130
Sau3AI GATC 5 cut(s) 422, 552, 1056, 1222, 1339
Sau96I GGNCC 2 cut(s) 1085, 1352
SinI GGWCC 2 cut(s) 1085, 1352
SmiMI CAYNNNNRTG 4 cut(s) 562, 568, 600, 606
SmlI CTYRAG 1 cut(s) 1157
SmoI CTYRAG 1 cut(s) 1157
Sse9I AATT 9 cut(s) 188, 214, 378, 459, 581, 717, 1234, 1244, 1251
SsiI CCGC 1 cut(s) 397
SspMI CTAG 4 cut(s) 437, 530, 1004, 1209
StyI CCWWGG 2 cut(s) 174, 1183
TaaI ACNGT 1 cut(s) 763
TaiI ACGT 1 cut(s) 1055
TaqI TCGA 3 cut(s) 374, 444, 1200
TasI AATT 9 cut(s) 188, 214, 378, 459, 581, 717, 1234, 1244, 1251
TfiI GAWTC 4 cut(s) 647, 778, 835, 1197
TscAI CASTG 4 cut(s) 40, 341, 889, 1144
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 2 cut(s) 873, 1129
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 5 cut(s) 287, 317, 552, 590, 968
TspGWI ACGGA 3 cut(s) 195, 761, 1070
TspRI CASTG 4 cut(s) 40, 341, 889, 1144
Tth111I GACNNNGTC 1 cut(s) 848
VpaK11BI GGWCC 2 cut(s) 1085, 1352
XapI RAATTY 4 cut(s) 214, 378, 459, 1234
XceI RCATGY 1 cut(s) 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 1190
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 4 cut(s) 437, 530, 1004, 1209
Zsp2I ATGCAT 2 cut(s) 575, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.