Rmu_sc0000076.1_g000030

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000076.1
OG0000155
Physical Location & Seq
Reverse (-)
139494 .. 141349
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000076.1_g000030.1.cds

Sequence Viewer

Length: 837 bp
atggaacacaagcataagtcactggcaactgcaacttctcaagctcaaggagcttgtgctgaccccatggtagacagattgagtagtgttccatgcgaagttgctcaccaaattctttcattggtcagttttaaagatctcactcgcgtggcagcatgtccaaaagatgcacagaatatgtatatgattcgtcgcagggatgataagataaagagctttcgtattcattggcgtttctctgcaggaatttcagaagagagtttccgaatgatgacttggatccttattgcagtgaggtgcaatgttgaagtgcttgatcttgagttgagtttgaatacaaaagatggagcaacacttgaattgccaccttgcatctattgctgtgaatctttgaggtcaatgttgatcaacacagagacaattcttaaagcaccctcctttacttgttccattaatctccggtacttgaaattgactagtgttagaatggatgatggtttctacagggttaattcacttgttctgaccggggagaccgttaaggtattgttcagggaaggttccatgcctcccccattggatggtactacttacttgggtatgcatattaagagcttgattgatgacctagtccctgcaatggtctctattctgagaggaatgcctaatctgaagactttgtgcatcaattcttacccttccttgaacattgttaaaccgaaagcatgtggtttgaagaggaaattctggaaatcccaaaatctggattgtattcatcagcttgaggaggtatcagtagcactctccattggttatcctactaatgccttggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

278

Amino Acids

31.21

Weight (kDa)

8.6

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 581, 763
AccI GTMKAC 1 cut(s) 72
AccII CGCG 1 cut(s) 147
AclWI GGATC 2 cut(s) 274, 287
AcsI RAATTY 3 cut(s) 111, 246, 743
AcuI CTGAAG 1 cut(s) 692
AfaI GTAC 2 cut(s) 464, 586
AfiI CCNNNNNNNGG 3 cut(s) 581, 640, 763
AgsI TTSAA 6 cut(s) 308, 334, 359, 469, 706, 736
AhlI ACTAGT 1 cut(s) 476
AjuI GAANNNNNNNTTGG 2 cut(s) 259, 291
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 5 cut(s) 44, 53, 216, 615, 781
AluI AGCT 5 cut(s) 44, 53, 216, 615, 781
Alw26I GTCTC 3 cut(s) 410, 527, 649
AlwI GGATC 2 cut(s) 274, 287
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 3 cut(s) 111, 246, 743
AseI ATTAAT 1 cut(s) 453
AsuC2I CCSGG 1 cut(s) 529
AsuHPI GGTGA 1 cut(s) 98
BamHI GGATCC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 680
BbvI GCAGC 1 cut(s) 164
BccI CCATC 3 cut(s) 338, 488, 575
BclI TGATCA 1 cut(s) 405
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 3 cut(s) 410, 527, 649
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 2 cut(s) 477, 629
BfmI CTRYAG 2 cut(s) 240, 502
BglII AGATCT 1 cut(s) 136
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 529
BmiI GGNNCC 2 cut(s) 281, 562
BmrFI CCNGG 1 cut(s) 529
BmsI GCATC 3 cut(s) 157, 381, 693
BpiI GAAGAC 1 cut(s) 680
BpuEI CTTGAG 4 cut(s) 24, 30, 341, 803
BpuMI CCSGG 1 cut(s) 529
BsaI GGTCTC 2 cut(s) 527, 649
BsaJI CCNNGG 3 cut(s) 66, 528, 828
BsaWI WCCGGW 1 cut(s) 459
Bsc4I CCNNNNNNNGG 3 cut(s) 581, 640, 763
Bse1I ACTGG 1 cut(s) 27
Bse3DI GCAATG 2 cut(s) 307, 645
BseDI CCNNGG 3 cut(s) 66, 528, 828
BseGI GGATG 3 cut(s) 205, 496, 586
BseLI CCNNNNNNNGG 3 cut(s) 581, 640, 763
BseMI GCAATG 2 cut(s) 307, 645
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 800
BseXI GCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 460, 528
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 3 cut(s) 581, 640, 763
BsmAI GTCTC 3 cut(s) 410, 527, 649
BsmFI GGGAC 1 cut(s) 617
BsmI GAATGC 1 cut(s) 666
Bso31I GGTCTC 2 cut(s) 527, 649
Bsp143I GATC 4 cut(s) 136, 279, 316, 405
Bsp19I CCATGG 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 645
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 281, 562
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 2 cut(s) 274, 287
BspTNI GGTCTC 2 cut(s) 527, 649
BsrDI GCAATG 2 cut(s) 307, 645
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 3 cut(s) 66, 528, 828
BssMI GATC 4 cut(s) 136, 279, 316, 405
BssT1I CCWWGG 2 cut(s) 66, 828
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 2 cut(s) 249, 731
BstAPI GCANNNNNTGC 1 cut(s) 378
BstDEI CTNAG 1 cut(s) 653
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 3 cut(s) 205, 496, 586
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 4 cut(s) 139, 282, 319, 408
BstMAI GTCTC 3 cut(s) 410, 527, 649
BstMBI GATC 4 cut(s) 136, 279, 316, 405
BstMWI GCNNNNNNNGC 2 cut(s) 50, 378
BstNSI RCATGY 2 cut(s) 159, 729
BstSCI CCNGG 1 cut(s) 527
BstSFI CTRYAG 2 cut(s) 240, 502
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 680
BstX2I RGATCY 2 cut(s) 136, 279
BstYI RGATCY 2 cut(s) 136, 279
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 3 cut(s) 205, 496, 586
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 20, 297
Csp6I GTAC 2 cut(s) 463, 585
CviAII CATG 5 cut(s) 67, 93, 156, 565, 726
CviJI RGCY 5 cut(s) 44, 53, 216, 615, 781
CviKI_1 RGCY 5 cut(s) 44, 53, 216, 615, 781
CviQI GTAC 2 cut(s) 463, 585
DdeI CTNAG 1 cut(s) 653
DpnI GATC 4 cut(s) 138, 281, 318, 407
DpnII GATC 4 cut(s) 136, 279, 316, 405
DraI TTTAAA 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 249, 731
EarI CTCTTC 2 cut(s) 249, 731
Eco130I CCWWGG 2 cut(s) 66, 828
Eco31I GGTCTC 2 cut(s) 527, 649
Eco57I CTGAAG 1 cut(s) 692
EcoT14I CCWWGG 2 cut(s) 66, 828
EcoT22I ATGCAT 1 cut(s) 606
ErhI CCWWGG 2 cut(s) 66, 828
FaeI CATG 5 cut(s) 70, 96, 159, 568, 729
FaqI GGGAC 1 cut(s) 617
FatI CATG 5 cut(s) 66, 92, 155, 564, 725
FbaI TGATCA 1 cut(s) 405
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 3 cut(s) 212, 503, 593
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 2 cut(s) 477, 629
GluI GCNGC 1 cut(s) 153
HapII CCGG 2 cut(s) 460, 528
Hin1II CATG 5 cut(s) 70, 96, 159, 568, 729
HinfI GANTC 2 cut(s) 187, 386
HpaII CCGG 2 cut(s) 460, 528
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 5 cut(s) 253, 266, 525, 654, 672
Hpy188III TCNNGA 3 cut(s) 320, 748, 764
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 551, 708
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4V TGCA 9 cut(s) 32, 170, 242, 290, 300, 372, 604, 638, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 378
HpyF3I CTNAG 1 cut(s) 653
Hsp92II CATG 5 cut(s) 70, 96, 159, 568, 729
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 4 cut(s) 136, 279, 316, 405
LmnI GCTCC 2 cut(s) 50, 347
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 3 cut(s) 157, 381, 693
MaeI CTAG 2 cut(s) 477, 629
MaeIII GTNAC 1 cut(s) 18
MalI GATC 4 cut(s) 138, 281, 318, 407
MboI GATC 4 cut(s) 136, 279, 316, 405
MboII GAAGA 3 cut(s) 266, 685, 748
MflI RGATCY 2 cut(s) 136, 279
MluCI AATT 8 cut(s) 111, 246, 359, 420, 470, 511, 688, 743
MnlI CCTC 8 cut(s) 288, 387, 445, 579, 650, 732, 778, 781
Mph1103I ATGCAT 1 cut(s) 606
MseI TTAA 7 cut(s) 132, 426, 453, 510, 540, 609, 714
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 2 cut(s) 460, 528
MspR9I CCNGG 1 cut(s) 529
Mva1269I GAATGC 1 cut(s) 666
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 50, 378
NciI CCSGG 1 cut(s) 529
NcoI CCATGG 1 cut(s) 66
NdeII GATC 4 cut(s) 136, 279, 316, 405
NlaIII CATG 5 cut(s) 70, 96, 159, 568, 729
NlaIV GGNNCC 2 cut(s) 281, 562
NmuCI GTSAC 1 cut(s) 18
NsiI ATGCAT 1 cut(s) 606
NspI RCATGY 2 cut(s) 159, 729
OliI CACNNNNGTG 1 cut(s) 146
PctI GAATGC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 187, 386
PflFI GACNNNGTC 1 cut(s) 629
PflMI CCANNNNNTGG 2 cut(s) 581, 763
PkrI GCNGC 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 281, 562
PstI CTGCAG 1 cut(s) 244
PsuI RGATCY 2 cut(s) 136, 279
PsyI GACNNNGTC 1 cut(s) 629
RsaI GTAC 2 cut(s) 464, 586
RsaNI GTAC 2 cut(s) 463, 585
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 7 cut(s) 132, 426, 453, 510, 540, 609, 714
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 4 cut(s) 136, 279, 316, 405
ScrFI CCNGG 1 cut(s) 529
SfaNI GCATC 3 cut(s) 157, 381, 693
SfcI CTRYAG 2 cut(s) 240, 502
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 4 cut(s) 39, 45, 320, 782
SmoI CTYRAG 4 cut(s) 39, 45, 320, 782
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 8 cut(s) 111, 246, 359, 420, 470, 511, 688, 743
SspMI CTAG 2 cut(s) 477, 629
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 2 cut(s) 66, 828
TaaI ACNGT 1 cut(s) 538
TasI AATT 8 cut(s) 111, 246, 359, 420, 470, 511, 688, 743
TfiI GAWTC 2 cut(s) 187, 386
Tru1I TTAA 7 cut(s) 132, 426, 453, 510, 540, 609, 714
Tru9I TTAA 7 cut(s) 132, 426, 453, 510, 540, 609, 714
TscAI CASTG 2 cut(s) 27, 297
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 3 cut(s) 108, 215, 764
TspRI CASTG 2 cut(s) 27, 297
Tth111I GACNNNGTC 1 cut(s) 629
Van91I CCANNNNNTGG 2 cut(s) 581, 763
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 3 cut(s) 111, 246, 743
XceI RCATGY 2 cut(s) 159, 729
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 2 cut(s) 477, 629
Zsp2I ATGCAT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.