FvH4_5g26400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000155
Physical Location & Seq
Reverse (-)
17900640 .. 17900927
288 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26400.t1

Sequence Viewer

Length: 288 bp
ATGGAAAACAAGCATAAGTTATTGGCAACTGAAAGTTCTCAAGCTCAGGGAGTTTGTCCTAACACTATAGTAGATCGATTCAGTACTCTTCCAGATGAAATTGCTCTTCACATACTTTCATCACTGGATTATCAAGGTCTCACTCGAGTAGGTGTTGTGTCAAAGAGATGCTATGAGTTTTATCTCTCAACTCCGTCATTCTGCTTTGACACCCGTTATGATAACATGAAGATCACATCAATCAAGATAAATTGTTTTGATCACTTCTTACATCGTCGTGGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBD

Protein Analysis

96

Amino Acids

10.95

Weight (kDa)

7.71

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 27 - 59 2.5e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 85
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 144
AvaI CYCGRG 1 cut(s) 144
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 66
BmcAI AGTACT 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 144
BmsI GCATC 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 24
Bsa29I ATCGAT 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 76
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 144
Bsp143I GATC 3 cut(s) 73, 231, 259
BspCNI CTCAG 1 cut(s) 58
BspDI ATCGAT 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 129
BssMI GATC 3 cut(s) 73, 231, 259
Bst6I CTCTTC 2 cut(s) 93, 111
BstDEI CTNAG 1 cut(s) 45
BstKTI GATC 3 cut(s) 76, 234, 262
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 73, 231, 259
BstSFI CTRYAG 1 cut(s) 66
Bsu15I ATCGAT 1 cut(s) 76
BsuTUI ATCGAT 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 122
ClaI ATCGAT 1 cut(s) 76
Csp6I GTAC 1 cut(s) 84
CviAII CATG 1 cut(s) 226
CviJI RGCY 1 cut(s) 44
CviKI_1 RGCY 1 cut(s) 44
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 1 cut(s) 45
DpnI GATC 3 cut(s) 75, 233, 261
DpnII GATC 3 cut(s) 73, 231, 259
Eam1104I CTCTTC 2 cut(s) 93, 111
EarI CTCTTC 2 cut(s) 93, 111
Eco31I GGTCTC 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 144
FaeI CATG 1 cut(s) 229
FaiI YATR 6 cut(s) 15, 68, 113, 174, 219, 227
FatI CATG 1 cut(s) 225
FbaI TGATCA 1 cut(s) 259
Hin1II CATG 1 cut(s) 229
HinfI GANTC 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 92, 244
Hpy99I CGWCG 1 cut(s) 279
HpyF3I CTNAG 1 cut(s) 45
Hsp92II CATG 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 3 cut(s) 73, 231, 259
LguI GCTCTTC 1 cut(s) 111
LpnPI CCDG 3 cut(s) 32, 105, 110
LweI GCATC 1 cut(s) 158
MalI GATC 3 cut(s) 75, 233, 261
MboI GATC 3 cut(s) 73, 231, 259
MboII GAAGA 3 cut(s) 80, 98, 241
MluCI AATT 2 cut(s) 99, 250
MslI CAYNNNNRTG 1 cut(s) 276
NdeII GATC 3 cut(s) 73, 231, 259
NlaIII CATG 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 78
PspXI VCTCGAGB 1 cut(s) 144
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 276
SapI GCTCTTC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 73, 231, 259
ScaI AGTACT 1 cut(s) 85
SetI ASST 3 cut(s) 46, 139, 154
SfaNI GCATC 1 cut(s) 158
SfcI CTRYAG 1 cut(s) 66
Sfr274I CTCGAG 1 cut(s) 144
SlaI CTCGAG 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 39, 144
SmoI CTYRAG 2 cut(s) 39, 144
Sse9I AATT 2 cut(s) 99, 250
TaqI TCGA 2 cut(s) 76, 145
TasI AATT 2 cut(s) 99, 250
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 1 cut(s) 78
TscAI CASTG 1 cut(s) 129
TspDTI ATGAA 3 cut(s) 108, 111, 242
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.