Rh3DG223700

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000155
Physical Location & Seq
Forward (+)
21022537 .. 21023961
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG223700.1

Sequence Viewer

Length: 1065 bp
ATGGAAACTCCAAGTTGTGCTGAGGTAGACAGATTCAGTGATCTTCCAGACGGAGTTGCCCATCACATTCTCTCCTTCCTTACCATACCAGACGTCGCTCGTTTTGGCTGTGTGTCCAAAAGATGCGGACAACTTCCTCTGTCAACTCCCACATTGAAATTTGAAGGATTTTCGAGGGCGAGTTTATCTACATTGGATAAGAGGTCAAGGTTGTTGAATGCTTTGGATAGTTTTATGATTCGTCGTGGGGATGATAAGATACACACCTTTCGTAACACCTTTCGTTCTTGTAGCACCTTTCGTTTTCTTACCTTCTGCGCAGATGCTAACCCTAGAATCATCAATTGGATTGACAATGCATTAAGGTGTAACGTTGAACTGCTTGATCTTGAGCTCTGCACGGTTTCTTTGACTCGGCTGTTTCAGTCTATCTTGCTTTGTGGATCTTTGAAGTCTTTGTCAGTGGGAATGGAGTATAAGTATGTATCCCTAACATTACCCTCCTCGGCTTGTTTCTCTAATATTGAATGCTTGAAGTTGAAAAGCATTGAGGTAGTGGATGAGGGGTTTTTCAAATGGATCTCGTCTACTTGCAAATCTATTAAGAAATTACATCTTGAAGAAATTCAGGGGATAAAACATCTCAGCATTGAAAGTTCATCTTTGCAATCGTTTAGTTTTGTGCATCGCCTACAGTTGGACCCCTTCCATCTTAGCATTTCTGCTGACAATCTGGAAGATCTAGTTATTAATTGGGGATTTTGTGGTTGCCAAAAGTTAAATATATTTGCTCCGAAAGTTAGATATATGAAATGGACAGGGAAATTGTTGATTCACCAAAATTTTGGTGAATTTAAGCTTCTAGAACAAGCTGAGCTTTATCTGAGACCTGGAGGGAATGACTTTCTATCTGAGTTTCTTAGCAGCATATGCAAGGTCAAGGCTCTTATTATGAAGGAAGATACCGTAAATACCGTAAATGCTTTGTTCGAGAAAGGTTCCATGCCAGCTCCTTTAGATAATGTACGTTCGTCAACTGCAGCTTCATGTTGGGTACTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

354

Amino Acids

39.91

Weight (kDa)

8.13

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 45 5.7e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
Acc16I TGCGCA 1 cut(s) 319
AccI GTMKAC 2 cut(s) 27, 587
AciI CCGC 1 cut(s) 126
AclI AACGTT 1 cut(s) 372
AclWI GGATC 2 cut(s) 451, 587
AcsI RAATTY 4 cut(s) 158, 624, 841, 851
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 1026, 1056
AfiI CCNNNNNNNGG 1 cut(s) 697
AjnI CCWGG 1 cut(s) 889
AjuI GAANNNNNNNTTGG 2 cut(s) 328, 360
AluBI AGCT 6 cut(s) 394, 859, 872, 877, 1010, 1043
AluI AGCT 6 cut(s) 394, 859, 872, 877, 1010, 1043
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 880
AlwI GGATC 2 cut(s) 451, 587
ApeKI GCWGC 2 cut(s) 924, 1040
ApoI RAATTY 4 cut(s) 158, 624, 841, 851
AseI ATTAAT 1 cut(s) 750
Asp700I GAANNNNTTC 1 cut(s) 624
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 700
AsuHPI GGTGA 2 cut(s) 827, 860
AvaII GGWCC 1 cut(s) 700
BaeI ACNNNNGTAYC 1 cut(s) 1046
BanII GRGCYC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 396
BbvCI CCTCAGC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 936, 1052
BccI CCATC 2 cut(s) 69, 717
BciT130I CCWGG 1 cut(s) 891
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 880
BfaI CTAG 3 cut(s) 333, 743, 863
BfmI CTRYAG 2 cut(s) 692, 1038
BfuI GTATCC 1 cut(s) 496
BglII AGATCT 1 cut(s) 739
BisI GCNGC 2 cut(s) 925, 1041
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 2 cut(s) 926, 1042
Bme1390I CCNGG 1 cut(s) 891
Bme18I GGWCC 1 cut(s) 700
BmgT120I GGNCC 1 cut(s) 700
BmiI GGNNCC 2 cut(s) 702, 1000
BmrFI CCNGG 1 cut(s) 891
BmsI GCATC 3 cut(s) 113, 313, 694
BpmI CTGGAG 1 cut(s) 912
Bpu10I CCTNAGC 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 873
BpuEI CTTGAG 1 cut(s) 410
BsaHI GRCGYC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 880
BsaJI CCNNGG 1 cut(s) 504
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 464, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 697
BseBI CCWGG 1 cut(s) 891
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 2 cut(s) 256, 565
BseLI CCNNNNNNNGG 1 cut(s) 697
BseMII CTCAG 5 cut(s) 12, 658, 864, 875, 903
BseRI GAGGAG 1 cut(s) 493
BseXI GCAGC 2 cut(s) 936, 1052
BsgI GTGCAG 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 396
BslI CCNNNNNNNGG 1 cut(s) 697
BsmAI GTCTC 1 cut(s) 880
BsmI GAATGC 2 cut(s) 223, 533
Bso31I GGTCTC 1 cut(s) 880
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 5 cut(s) 40, 385, 443, 579, 739
Bsp1720I GCTNAGC 1 cut(s) 873
BspACI CCGC 1 cut(s) 126
BspCNI CTCAG 5 cut(s) 13, 657, 865, 876, 904
BspLI GGNNCC 2 cut(s) 702, 1000
BspMAI CTGCAG 1 cut(s) 1042
BspPI GGATC 2 cut(s) 451, 587
BspTNI GGTCTC 1 cut(s) 880
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 5 cut(s) 40, 385, 443, 579, 739
BssNI GRCGYC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 891
Bst4CI ACNGT 4 cut(s) 403, 696, 967, 976
BstACI GRCGYC 1 cut(s) 93
BstAPI GCANNNNNTGC 1 cut(s) 930
BstC8I GCNNGC 1 cut(s) 1008
BstDEI CTNAG 7 cut(s) 21, 644, 713, 873, 884, 912, 920
BstF5I GGATG 2 cut(s) 256, 565
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 5 cut(s) 43, 388, 446, 582, 742
BstMAI GTCTC 1 cut(s) 880
BstMBI GATC 5 cut(s) 40, 385, 443, 579, 739
BstMWI GCNNNNNNNGC 1 cut(s) 930
BstNI CCWGG 1 cut(s) 891
BstSCI CCNGG 1 cut(s) 889
BstSFI CTRYAG 2 cut(s) 692, 1038
BstV1I GCAGC 2 cut(s) 936, 1052
BstX2I RGATCY 3 cut(s) 443, 579, 739
BstXI CCANNNNNNTGG 1 cut(s) 845
BstYI RGATCY 3 cut(s) 443, 579, 739
BsuI GTATCC 1 cut(s) 496
BtgZI GCGATG 1 cut(s) 671
BtsCI GGATG 2 cut(s) 256, 565
BtsIMutI CAGTG 2 cut(s) 43, 468
Cac8I GCNNGC 1 cut(s) 1008
CfoI GCGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 700
Csp6I GTAC 2 cut(s) 1025, 1055
CviAII CATG 2 cut(s) 1003, 1047
CviQI GTAC 2 cut(s) 1025, 1055
DdeI CTNAG 7 cut(s) 21, 644, 713, 873, 884, 912, 920
DpnI GATC 5 cut(s) 42, 387, 445, 581, 741
DpnII GATC 5 cut(s) 40, 385, 443, 579, 739
Ecl136II GAGCTC 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 880
Eco47I GGWCC 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 889
EcoT22I ATGCAT 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 396
FaeI CATG 2 cut(s) 1006, 1050
FalI AAGNNNNNCTT 4 cut(s) 646, 678, 861, 893
FatI CATG 2 cut(s) 1002, 1046
FauNDI CATATG 1 cut(s) 929
FblI GTMKAC 2 cut(s) 27, 587
Fnu4HI GCNGC 2 cut(s) 925, 1041
FokI GGATG 2 cut(s) 263, 572
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 2 cut(s) 925, 1041
FspBI CTAG 3 cut(s) 333, 743, 863
FspI TGCGCA 1 cut(s) 319
GlaI GCGC 1 cut(s) 319
GluI GCNGC 2 cut(s) 925, 1041
GsuI CTGGAG 1 cut(s) 912
HhaI GCGC 1 cut(s) 320
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 2 cut(s) 1006, 1050
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HincII GTYRAC 2 cut(s) 144, 1035
HindII GTYRAC 2 cut(s) 144, 1035
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 5 cut(s) 33, 238, 336, 412, 832
HphI GGTGA 2 cut(s) 827, 860
Hpy166II GTNNAC 4 cut(s) 28, 144, 588, 1035
Hpy188I TCNGA 3 cut(s) 795, 885, 913
Hpy188III TCNNGA 6 cut(s) 47, 389, 617, 734, 863, 991
Hpy8I GTNNAC 4 cut(s) 28, 144, 588, 1035
Hpy99I CGWCG 2 cut(s) 98, 246
HpyAV CCTTC 5 cut(s) 85, 158, 322, 715, 949
HpyCH4III ACNGT 4 cut(s) 403, 696, 967, 976
HpyCH4IV ACGT 3 cut(s) 93, 372, 1027
HpyCH4V TGCA 7 cut(s) 359, 399, 594, 667, 685, 933, 1040
HpyF10VI GCNNNNNNNGC 1 cut(s) 930
HpyF3I CTNAG 7 cut(s) 21, 644, 713, 873, 884, 912, 920
HpySE526I ACGT 3 cut(s) 93, 372, 1027
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 2 cut(s) 1006, 1050
HspAI GCGC 1 cut(s) 318
Kzo9I GATC 5 cut(s) 40, 385, 443, 579, 739
LmnI GCTCC 2 cut(s) 796, 1015
LpnPI CCDG 8 cut(s) 60, 102, 614, 719, 804, 876, 903, 1020
Lsp1109I GCAGC 2 cut(s) 936, 1052
LweI GCATC 3 cut(s) 113, 313, 694
MaeI CTAG 3 cut(s) 333, 743, 863
MaeII ACGT 3 cut(s) 93, 372, 1027
MaeIII GTNAC 2 cut(s) 272, 368
MalI GATC 5 cut(s) 42, 387, 445, 581, 741
MboI GATC 5 cut(s) 40, 385, 443, 579, 739
MboII GAAGA 4 cut(s) 35, 632, 749, 971
MfeI CAATTG 1 cut(s) 343
MflI RGATCY 3 cut(s) 443, 579, 739
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 8 cut(s) 158, 343, 608, 624, 751, 824, 841, 851
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 678
MnlI CCTC 9 cut(s) 16, 147, 168, 195, 511, 514, 544, 556, 887
Mph1103I ATGCAT 1 cut(s) 361
MroXI GAANNNNTTC 1 cut(s) 624
MseI TTAA 5 cut(s) 362, 603, 750, 779, 855
MslI CAYNNNNRTG 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 891
MunI CAATTG 1 cut(s) 343
Mva1269I GAATGC 2 cut(s) 223, 533
MvaI CCWGG 1 cut(s) 891
MwoI GCNNNNNNNGC 1 cut(s) 930
NdeI CATATG 1 cut(s) 929
NdeII GATC 5 cut(s) 40, 385, 443, 579, 739
NlaIII CATG 2 cut(s) 1006, 1050
NlaIV GGNNCC 2 cut(s) 702, 1000
NmeAIII GCCGAG 2 cut(s) 394, 485
NsbI TGCGCA 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 361
PctI GAATGC 2 cut(s) 223, 533
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 4 cut(s) 33, 238, 336, 832
PkrI GCNGC 2 cut(s) 926, 1042
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PshBI ATTAAT 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 396
Psp1406I AACGTT 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 889
PspGI CCWGG 1 cut(s) 889
PspN4I GGNNCC 2 cut(s) 702, 1000
PspPI GGNCC 1 cut(s) 700
PstI CTGCAG 1 cut(s) 1042
PsuI RGATCY 3 cut(s) 443, 579, 739
RsaI GTAC 2 cut(s) 1026, 1056
RsaNI GTAC 2 cut(s) 1025, 1055
RseI CAYNNNNRTG 1 cut(s) 364
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 5 cut(s) 362, 603, 750, 779, 855
SatI GCNGC 2 cut(s) 925, 1041
Sau3AI GATC 5 cut(s) 40, 385, 443, 579, 739
Sau96I GGNCC 1 cut(s) 700
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 891
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 3 cut(s) 113, 313, 694
SfcI CTRYAG 2 cut(s) 692, 1038
SinI GGWCC 1 cut(s) 700
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 8 cut(s) 158, 343, 608, 624, 751, 824, 841, 851
SsiI CCGC 1 cut(s) 126
SspI AATATT 1 cut(s) 523
SspMI CTAG 3 cut(s) 333, 743, 863
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 889
TaaI ACNGT 4 cut(s) 403, 696, 967, 976
TaiI ACGT 3 cut(s) 96, 375, 1030
TaqI TCGA 2 cut(s) 173, 990
TasI AATT 8 cut(s) 158, 343, 608, 624, 751, 824, 841, 851
TfiI GAWTC 4 cut(s) 33, 238, 336, 832
Tru1I TTAA 5 cut(s) 362, 603, 750, 779, 855
Tru9I TTAA 5 cut(s) 362, 603, 750, 779, 855
TscAI CASTG 2 cut(s) 43, 468
TseI GCWGC 2 cut(s) 924, 1040
TspDTI ATGAA 4 cut(s) 648, 824, 968, 1035
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 2 cut(s) 43, 468
VpaK11BI GGWCC 1 cut(s) 700
VspI ATTAAT 1 cut(s) 750
XapI RAATTY 4 cut(s) 158, 624, 841, 851
XbaI TCTAGA 1 cut(s) 862
XmiI GTMKAC 2 cut(s) 27, 587
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 3 cut(s) 333, 743, 863
ZraI GACGTC 1 cut(s) 94
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.