Rh3AG198600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000155
Physical Location & Seq
Forward (+)
19446560 .. 19449346
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG198600.1

Sequence Viewer

Length: 1245 bp
ATGGATCATAAGCAAAAGTTGATAGCAACTCCAACTTGTCGAGGTCAAGGAGTTCGCGCTGAGACCATGGTGGATGGATTCAGCAATCTTCCAGACGGTGTTACTCATCAGATTCTCTCACACCTCACTATAACAGACGTTACCCGTTTTGGCTCTGTGTCCAAAAGATGCAGACAACTTCATCTCTCAACTCCTTCATTGAAATTTGAAGGATTTTCGGAGGCGAATTTGTCTACCTTGGGCAACAGGTTAGCGCTGTTGAATGCTTTGGATGGTTTCATGATTCGTCGTGGGGATGTGAAGTTGCAAACCTTTCGTTTTCGTAGCTTCTGCGGATTCGAGAAGTCTCGTATCATCGAATGGATTCGCAATGCATTGCGGTGTAACGTTGAGGGGCTTGATTTTGAGCTTGGTTTAGTTGATTTGCCACTTTTGTTTCAGTCTATCTTACGTTGTGCAACTTTGAGGTCTTTGTCTGTGGAAATGAAGTATAAGTATAGGTTCCTTACATTACCCTCCTCGGCTTGTTTCGCTAATATTGAATGCTTGAAGCTGAAAAATATTCATGTAGTGGATGAGGGATTTTTCAGATGGATCTCATCCTCTTGCAAGTGCATTAAGGAATTACGTCTCGAAGGAATTGAGGGGATAAGTCATCTCTCAATTGAAAGTTCATCTTTAGTGTCGTTTAGTGTTGTGCATCCGTTTCAGTCGGATCCACTGATTCTCAGCATCTCTGCCGAGAAACTGGTAGACCTAGTTATTGACTGGGGATTTCAAAATTGCAAGAAGGTGTTGAATGTTACTGCTCCGGAAGTTAGATATTTGAAGTTAGAAGGGAATTCTTTGATTCACCAAAAACTTGGGGAATTGAGGCGTTTAGAAAAAGCTGATCTTTGTCTGAGACCTGGAGGGAATGACATTAACATGCTATCTGAGTTTATTAGCAGTATACGAAGTGTCAAAGTTCTTATTTTAGGGGAGGAGATCCTAAAGGTAAAAGACACTATTCAAACTTGTTTTCATTTATTTTTTGGGGCAAAAACTAGTATTTTGCAATTGCTCTTGTTGTGGTCACAACCTTTCCTGGCATATGTGTATGTTGAATATCATAATCTATCTGACGGCACTTTTTTTATCTCATTTATAATGGTCAGATTACCTAGGATGGAAGTTCTTATTTATGTTGCAGTTAGTCCTAAAAGAATACTAATGTGTAGGAGTAAATTGAAAAATGTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

414

Amino Acids

47.05

Weight (kDa)

9.11

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 60 4.9e-06 F-box domain
LRR_At5g56370 PF24758 120 - 276 2e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1148
AccI GTMKAC 3 cut(s) 233, 753, 952
AccII CGCG 1 cut(s) 57
AccIII TCCGGA 1 cut(s) 811
AciI CCGC 2 cut(s) 333, 379
AclI AACGTT 1 cut(s) 387
AclWI GGATC 5 cut(s) 12, 602, 710, 723, 982
AcsI RAATTY 3 cut(s) 203, 226, 841
AfeI AGCGCT 1 cut(s) 255
AhlI ACTAGT 1 cut(s) 1046
AjnI CCWGG 2 cut(s) 907, 1086
AluBI AGCT 4 cut(s) 327, 409, 553, 890
AluI AGCT 4 cut(s) 327, 409, 553, 890
Alw26I GTCTC 4 cut(s) 56, 351, 635, 898
AlwI GGATC 5 cut(s) 12, 602, 710, 723, 982
Aor13HI TCCGGA 1 cut(s) 811
Aor51HI AGCGCT 1 cut(s) 255
ApoI RAATTY 3 cut(s) 203, 226, 841
Asp700I GAANNNNTTC 1 cut(s) 363
AspA2I CCTAGG 1 cut(s) 1163
AspLEI GCGC 2 cut(s) 59, 256
AsuHPI GGTGA 1 cut(s) 845
AvrII CCTAGG 1 cut(s) 1163
BamHI GGATCC 1 cut(s) 715
BccI CCATC 4 cut(s) 68, 266, 585, 1162
BceAI ACGGC 1 cut(s) 1141
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 2 cut(s) 909, 1088
BcoDI GTCTC 4 cut(s) 56, 351, 635, 898
BcuI ACTAGT 1 cut(s) 1046
BfaI CTAG 3 cut(s) 758, 1047, 1164
BfoI RGCGCY 1 cut(s) 257
BlnI CCTAGG 1 cut(s) 1163
Bme1390I CCNGG 2 cut(s) 909, 1088
BmiI GGNNCC 2 cut(s) 503, 717
BmrFI CCNGG 2 cut(s) 909, 1088
BmrI ACTGGG 1 cut(s) 778
BmsI GCATC 3 cut(s) 158, 709, 741
BmuI ACTGGG 1 cut(s) 778
BpmI CTGGAG 1 cut(s) 930
BsaI GGTCTC 2 cut(s) 56, 898
BsaJI CCNNGG 4 cut(s) 66, 237, 519, 1163
BsaWI WCCGGW 1 cut(s) 811
Bse1I ACTGG 2 cut(s) 753, 773
Bse3DI GCAATG 2 cut(s) 374, 376
BseAI TCCGGA 1 cut(s) 811
BseBI CCWGG 2 cut(s) 909, 1088
BseDI CCNNGG 4 cut(s) 66, 237, 519, 1163
BseGI GGATG 7 cut(s) 79, 277, 301, 580, 599, 700, 1173
BseMI GCAATG 2 cut(s) 374, 376
BseMII CTCAG 4 cut(s) 51, 742, 893, 927
BseNI ACTGG 2 cut(s) 753, 773
BseRI GAGGAG 2 cut(s) 508, 998
Bsh1236I CGCG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 812
BsmAI GTCTC 4 cut(s) 56, 351, 635, 898
BsmBI CGTCTC 1 cut(s) 635
BsmI GAATGC 2 cut(s) 268, 548
Bso31I GGTCTC 2 cut(s) 56, 898
Bsp13I TCCGGA 1 cut(s) 811
Bsp143I GATC 5 cut(s) 4, 594, 715, 892, 987
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 2 cut(s) 333, 379
BspCNI CTCAG 4 cut(s) 52, 741, 894, 928
BspEI TCCGGA 1 cut(s) 811
BspFNI CGCG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 503, 717
BspPI GGATC 5 cut(s) 12, 602, 710, 723, 982
BspTNI GGTCTC 2 cut(s) 56, 898
BsrDI GCAATG 2 cut(s) 374, 376
BsrI ACTGG 2 cut(s) 753, 773
BssECI CCNNGG 4 cut(s) 66, 237, 519, 1163
BssMI GATC 5 cut(s) 4, 594, 715, 892, 987
BssNAI GTATAC 1 cut(s) 953
BssT1I CCWWGG 3 cut(s) 66, 237, 1163
Bst1107I GTATAC 1 cut(s) 953
Bst2UI CCWGG 2 cut(s) 909, 1088
Bst4CI ACNGT 1 cut(s) 98
BstDEI CTNAG 4 cut(s) 60, 728, 902, 936
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 7 cut(s) 79, 277, 301, 580, 599, 700, 1173
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 2 cut(s) 59, 256
BstKTI GATC 5 cut(s) 7, 597, 718, 895, 990
BstMAI GTCTC 4 cut(s) 56, 351, 635, 898
BstMBI GATC 5 cut(s) 4, 594, 715, 892, 987
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 2 cut(s) 909, 1088
BstNSI RCATGY 1 cut(s) 931
BstSCI CCNGG 2 cut(s) 907, 1086
BstUI CGCG 1 cut(s) 57
BstX2I RGATCY 3 cut(s) 594, 715, 987
BstXI CCANNNNNNTGG 1 cut(s) 863
BstYI RGATCY 3 cut(s) 594, 715, 987
BstZ17I GTATAC 1 cut(s) 953
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 7 cut(s) 79, 277, 301, 580, 599, 700, 1173
BtsIMutI CAGTG 1 cut(s) 719
CciI TCATGA 1 cut(s) 279
CfoI GCGC 2 cut(s) 59, 256
CviAII CATG 4 cut(s) 67, 280, 566, 928
CviJI RGCY 7 cut(s) 153, 327, 397, 409, 524, 553, 890
CviKI_1 RGCY 7 cut(s) 153, 327, 397, 409, 524, 553, 890
DdeI CTNAG 4 cut(s) 60, 728, 902, 936
DpnI GATC 5 cut(s) 6, 596, 717, 894, 989
DpnII GATC 5 cut(s) 4, 594, 715, 892, 987
Eco130I CCWWGG 3 cut(s) 66, 237, 1163
Eco31I GGTCTC 2 cut(s) 56, 898
Eco47III AGCGCT 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 841
EcoRII CCWGG 2 cut(s) 907, 1086
EcoT14I CCWWGG 3 cut(s) 66, 237, 1163
EcoT22I ATGCAT 1 cut(s) 376
ErhI CCWWGG 3 cut(s) 66, 237, 1163
Esp3I CGTCTC 1 cut(s) 635
FaeI CATG 4 cut(s) 70, 283, 569, 931
FalI AAGNNNNNCTT 4 cut(s) 661, 693, 879, 911
FatI CATG 4 cut(s) 66, 279, 565, 927
FauNDI CATATG 1 cut(s) 1093
FblI GTMKAC 3 cut(s) 233, 753, 952
FokI GGATG 7 cut(s) 86, 284, 308, 586, 587, 687, 1180
FspBI CTAG 3 cut(s) 758, 1047, 1164
GlaI GCGC 2 cut(s) 58, 255
GsuI CTGGAG 1 cut(s) 930
HaeII RGCGCY 1 cut(s) 257
HapII CCGG 1 cut(s) 812
HhaI GCGC 2 cut(s) 59, 256
Hin1II CATG 4 cut(s) 70, 283, 569, 931
Hin6I GCGC 2 cut(s) 57, 254
HinP1I GCGC 2 cut(s) 57, 254
HinfI GANTC 7 cut(s) 78, 112, 283, 336, 364, 724, 850
HpaII CCGG 1 cut(s) 812
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 3 cut(s) 234, 754, 953
Hpy188I TCNGA 8 cut(s) 111, 220, 590, 715, 903, 937, 1123, 1157
Hpy188III TCNNGA 5 cut(s) 92, 280, 340, 632, 812
Hpy8I GTNNAC 3 cut(s) 234, 754, 953
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 5 cut(s) 203, 204, 629, 784, 830
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 4 cut(s) 138, 387, 451, 628
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 4 cut(s) 60, 728, 902, 936
HpySE526I ACGT 4 cut(s) 138, 387, 451, 628
Hsp92II CATG 4 cut(s) 70, 283, 569, 931
HspAI GCGC 2 cut(s) 57, 254
Kpn2I TCCGGA 1 cut(s) 811
Kzo9I GATC 5 cut(s) 4, 594, 715, 892, 987
LmnI GCTCC 1 cut(s) 814
LpnPI CCDG 9 cut(s) 105, 232, 734, 754, 825, 894, 921, 1073, 1100
LweI GCATC 3 cut(s) 158, 709, 741
MaeI CTAG 3 cut(s) 758, 1047, 1164
MaeII ACGT 4 cut(s) 138, 387, 451, 628
MaeIII GTNAC 5 cut(s) 100, 139, 383, 802, 1074
MalI GATC 5 cut(s) 6, 596, 717, 894, 989
MboI GATC 5 cut(s) 4, 594, 715, 892, 987
MboII GAAGA 1 cut(s) 80
MfeI CAATTG 2 cut(s) 663, 1058
MflI RGATCY 3 cut(s) 594, 715, 987
MmeI TCCRAC 2 cut(s) 56, 693
Mph1103I ATGCAT 1 cut(s) 376
MroI TCCGGA 1 cut(s) 811
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 2 cut(s) 618, 924
MslI CAYNNNNRTG 2 cut(s) 379, 926
MspI CCGG 1 cut(s) 812
MspR9I CCNGG 2 cut(s) 909, 1088
MunI CAATTG 2 cut(s) 663, 1058
Mva1269I GAATGC 2 cut(s) 268, 548
MvaI CCWGG 2 cut(s) 909, 1088
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 530
NcoI CCATGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 1093
NdeII GATC 5 cut(s) 4, 594, 715, 892, 987
NlaIII CATG 4 cut(s) 70, 283, 569, 931
NlaIV GGNNCC 2 cut(s) 503, 717
NmeAIII GCCGAG 2 cut(s) 500, 766
NmuCI GTSAC 1 cut(s) 1074
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 931
PagI TCATGA 1 cut(s) 279
PctI GAATGC 2 cut(s) 268, 548
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 7 cut(s) 78, 112, 283, 336, 364, 724, 850
PsiI TTATAA 1 cut(s) 1148
Psp1406I AACGTT 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 907, 1086
PspGI CCWGG 2 cut(s) 907, 1086
PspN4I GGNNCC 2 cut(s) 503, 717
PsuI RGATCY 3 cut(s) 594, 715, 987
RseI CAYNNNNRTG 2 cut(s) 379, 926
SaqAI TTAA 2 cut(s) 618, 924
Sau3AI GATC 5 cut(s) 4, 594, 715, 892, 987
ScrFI CCNGG 2 cut(s) 909, 1088
SfaNI GCATC 3 cut(s) 158, 709, 741
SmiMI CAYNNNNRTG 2 cut(s) 379, 926
SpeI ACTAGT 1 cut(s) 1046
SsiI CCGC 2 cut(s) 333, 379
SspI AATATT 2 cut(s) 538, 562
SspMI CTAG 3 cut(s) 758, 1047, 1164
StyD4I CCNGG 2 cut(s) 907, 1086
StyI CCWWGG 3 cut(s) 66, 237, 1163
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 4 cut(s) 141, 390, 454, 631
TaqI TCGA 4 cut(s) 40, 339, 357, 633
TfiI GAWTC 7 cut(s) 78, 112, 283, 336, 364, 724, 850
Tru1I TTAA 2 cut(s) 618, 924
Tru9I TTAA 2 cut(s) 618, 924
TscAI CASTG 1 cut(s) 726
TseFI GTSAC 1 cut(s) 1074
Tsp45I GTSAC 1 cut(s) 1074
TspDTI ATGAA 7 cut(s) 170, 186, 268, 500, 554, 663, 1013
TspGWI ACGGA 1 cut(s) 693
TspRI CASTG 1 cut(s) 726
XapI RAATTY 3 cut(s) 203, 226, 841
XceI RCATGY 1 cut(s) 931
XmaJI CCTAGG 1 cut(s) 1163
XmiI GTMKAC 3 cut(s) 233, 753, 952
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 3 cut(s) 758, 1047, 1164
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.