RLG00000023964

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000155
Physical Location & Seq
Reverse (-)
30504524 .. 30506698
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023964

Sequence Viewer

Length: 699 bp
ATGAAAAAGAAACCGAGAATCCTGGAGAGGTTCAGTGATCTTCCTGACCAAGTTACCCATCACATTCTTTCCTTTCTCATCATAAGAGACTTAACTCGGTTTGGTTCCACGTCCAAAAAATGCAGAGAGCTTTACCTATCAGCTCCATCATTGAACTTTAAGGTAGAAGCCTCCTCTCGAAGATTCATGACCCAGCGAGCTAAGTTGCTGAACTCTGCGGAAAGGTACTTGCTTCAACGTGGTAATAATCCAATACTCTGCTTTCGCGTTTCTTGGGTTTTCCATGGAAGTGAAAGGGCAAGGATGCTTGATGAGCAGTTTCGATTCGCCTCGTGGATCCAGAATGCTGCTGTGTTCAAGGAAGGTTCCATGCCATTACCATTAGATGAGATTAGTAATTTGGGCATTCATATTTACAGCTTGGATGATGACCTAGTCCCGGCAATGGTCTCTCTTCTCAGAGGAATGACTAATTTGAATACTCTCTGGATAACATCTGCCAATTTGCCAGCCTATATGCGCTACTCTAAGGTTGATGTATCTGGGTTTAATATGAGTTTTTGGAAATCCCAAAGGCTTGCTTTCGTTTCTCAACTTAAGGAGGTAAGAATAGAGCTTGCAAATGGGAGTAATGAGATCGAGTTAGCAAGAATTAGGCCCGAACCGATCTCAACAAAGCAAATCAGGGTAACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

233

Amino Acids

26.83

Weight (kDa)

10.0

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 1 cut(s) 218
AclWI GGATC 2 cut(s) 331, 344
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 439, 445
AflII CTTAAG 1 cut(s) 596
AgsI TTSAA 4 cut(s) 154, 236, 358, 478
AjiI CACGTC 1 cut(s) 111
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 5 cut(s) 130, 143, 200, 420, 616
AluI AGCT 5 cut(s) 130, 143, 200, 420, 616
Alw26I GTCTC 2 cut(s) 81, 454
AlwI GGATC 2 cut(s) 331, 344
AoxI GGCC 1 cut(s) 656
ApeKI GCWGC 1 cut(s) 347
AspLEI GCGC 1 cut(s) 522
AspS9I GGNCC 1 cut(s) 657
AsuC2I CCSGG 1 cut(s) 440
BamHI GGATCC 1 cut(s) 336
BauI CACGAG 1 cut(s) 331
BbvI GCAGC 1 cut(s) 334
BccI CCATC 2 cut(s) 66, 154
BciT130I CCWGG 1 cut(s) 23
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 2 cut(s) 81, 454
BfaI CTAG 1 cut(s) 434
BfrI CTTAAG 1 cut(s) 596
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 2 cut(s) 23, 440
BmgBI CACGTC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 657
BmiI GGNNCC 3 cut(s) 106, 338, 367
BmrFI CCNGG 2 cut(s) 23, 440
BmsI GCATC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 2 cut(s) 439, 445
Bse3DI GCAATG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 2 cut(s) 309, 430
BseLI CCNNNNNNNGG 2 cut(s) 439, 445
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 334
BseYI CCCAGC 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 658
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 439, 445
BsmAI GTCTC 2 cut(s) 81, 454
BsmFI GGGAC 1 cut(s) 422
BsmI GAATGC 2 cut(s) 349, 405
BsnI GGCC 1 cut(s) 658
Bso31I GGTCTC 1 cut(s) 454
Bsp143I GATC 4 cut(s) 37, 336, 636, 666
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 658
BspCNI CTCAG 1 cut(s) 471
BspFNI CGCG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 106, 338, 367
BspPI GGATC 2 cut(s) 331, 344
BspTI CTTAAG 1 cut(s) 596
BspTNI GGTCTC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 450
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 4 cut(s) 37, 336, 636, 666
BssSI CACGAG 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 283
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 459
BstAFI CTTAAG 1 cut(s) 596
BstC8I GCNNGC 4 cut(s) 198, 510, 579, 618
BstDEI CTNAG 3 cut(s) 201, 458, 528
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 2 cut(s) 309, 430
BstFNI CGCG 1 cut(s) 267
BstHHI GCGC 1 cut(s) 522
BstKTI GATC 4 cut(s) 40, 339, 639, 669
BstMAI GTCTC 2 cut(s) 81, 454
BstMBI GATC 4 cut(s) 37, 336, 636, 666
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 21, 438
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BsuRI GGCC 1 cut(s) 658
BtgI CCRYGG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 309, 430
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 4 cut(s) 198, 510, 579, 618
CciI TCATGA 1 cut(s) 186
CfoI GCGC 1 cut(s) 522
Cfr13I GGNCC 1 cut(s) 657
Csp6I GTAC 1 cut(s) 226
CviAII CATG 3 cut(s) 187, 284, 370
CviJI RGCY 9 cut(s) 130, 143, 170, 200, 420, 512, 577, 616, 658
CviKI_1 RGCY 9 cut(s) 130, 143, 170, 200, 420, 512, 577, 616, 658
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 3 cut(s) 201, 458, 528
DpnI GATC 4 cut(s) 39, 338, 638, 668
DpnII GATC 4 cut(s) 37, 336, 636, 666
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 3 cut(s) 190, 287, 373
FaiI YATR 8 cut(s) 83, 188, 285, 371, 411, 516, 518, 554
FalI AAGNNNNNCTT 2 cut(s) 565, 597
FaqI GGGAC 1 cut(s) 422
FatI CATG 3 cut(s) 186, 283, 369
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 2 cut(s) 316, 437
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 521
GluI GCNGC 1 cut(s) 348
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 658
HapII CCGG 1 cut(s) 440
HhaI GCGC 1 cut(s) 522
Hin1II CATG 3 cut(s) 190, 287, 373
Hin6I GCGC 1 cut(s) 520
HinP1I GCGC 1 cut(s) 520
HinfI GANTC 3 cut(s) 18, 183, 324
HpaII CCGG 1 cut(s) 440
Hpy188I TCNGA 1 cut(s) 461
Hpy188III TCNNGA 5 cut(s) 44, 177, 187, 340, 487
HpyAV CCTTC 1 cut(s) 356
HpyCH4IV ACGT 2 cut(s) 110, 238
HpyCH4V TGCA 2 cut(s) 123, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 3 cut(s) 201, 458, 528
HpySE526I ACGT 2 cut(s) 110, 238
Hsp92II CATG 3 cut(s) 190, 287, 373
HspAI GCGC 1 cut(s) 520
Kzo9I GATC 4 cut(s) 37, 336, 636, 666
LmnI GCTCC 1 cut(s) 148
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 1 cut(s) 294
MaeI CTAG 1 cut(s) 434
MaeII ACGT 2 cut(s) 110, 238
MaeIII GTNAC 2 cut(s) 52, 688
MalI GATC 4 cut(s) 39, 338, 638, 668
MboI GATC 4 cut(s) 37, 336, 636, 666
MboII GAAGA 3 cut(s) 32, 192, 446
MflI RGATCY 1 cut(s) 336
MluCI AATT 4 cut(s) 397, 472, 502, 651
MnlI CCTC 6 cut(s) 21, 181, 184, 340, 455, 595
MseI TTAA 4 cut(s) 92, 159, 549, 597
MslI CAYNNNNRTG 1 cut(s) 288
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 2 cut(s) 23, 440
Mva1269I GAATGC 2 cut(s) 349, 405
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 313
NciI CCSGG 1 cut(s) 440
NcoI CCATGG 1 cut(s) 283
NdeII GATC 4 cut(s) 37, 336, 636, 666
NlaIII CATG 3 cut(s) 190, 287, 373
NlaIV GGNNCC 3 cut(s) 106, 338, 367
PagI TCATGA 1 cut(s) 186
PctI GAATGC 2 cut(s) 349, 405
PfeI GAWTC 3 cut(s) 18, 183, 324
PflFI GACNNNGTC 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 106, 338, 367
PspPI GGNCC 1 cut(s) 657
PsuI RGATCY 1 cut(s) 336
PsyI GACNNNGTC 1 cut(s) 434
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 4 cut(s) 92, 159, 549, 597
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 4 cut(s) 37, 336, 636, 666
Sau96I GGNCC 1 cut(s) 657
ScrFI CCNGG 2 cut(s) 23, 440
SfaNI GCATC 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 4 cut(s) 397, 472, 502, 651
SsiI CCGC 1 cut(s) 218
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 21, 438
StyI CCWWGG 1 cut(s) 283
TaiI ACGT 2 cut(s) 113, 241
TaqI TCGA 3 cut(s) 178, 322, 639
TasI AATT 4 cut(s) 397, 472, 502, 651
TfiI GAWTC 3 cut(s) 18, 183, 324
Tru1I TTAA 4 cut(s) 92, 159, 549, 597
Tru9I TTAA 4 cut(s) 92, 159, 549, 597
TscAI CASTG 1 cut(s) 40
TseI GCWGC 1 cut(s) 347
TspDTI ATGAA 3 cut(s) 17, 175, 398
TspRI CASTG 1 cut(s) 40
Tth111I GACNNNGTC 1 cut(s) 434
Vha464I CTTAAG 1 cut(s) 596
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.