Rmu_sc0002414.1_g000019

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002414.1
OG0000155
Physical Location & Seq
Reverse (-)
70614 .. 71657
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002414.1_g000019.1.cds

Sequence Viewer

Length: 1044 bp
atgaaaaacaaaccgacaaccctggagagtttcagtgatcttcctgaccaagttgctcatcacattctttcctttctcaccataagagacttaactcggttcagttccacgtccaaaaaatgcagggagctttacctatcagctccatcattgaactttaaggtagatgcctcctctcgaagattcatgaccaagcgagctaagttgctgaactctgtggaaaggtacttgcttcaacgtggtaataatccaatactctgctttcgcgtttcttgggttttccatgaaagtgaaagggcaaggttgtgtgatgagcagttccgattcgtctcgtggatccagaacgctgtaaggtgcaatgtcgaagtaatccaactagtttttgatcaaagtcacactgcagtcctgccagtccgtaagttcccattgccctcatgcatctggatttctacttctctgaggtccctattggtagtctcaagttttgtgattattcaagtgccctccttttctttctcatgtaatctctattccttaaagttgagaggcgtaataatagaagacgagaatttttgcaaatggatctcatgttcttgcaaatgtcttgaggaattattgcttgaaaatgttcgtggcaaagggttgaaaaattttactattgaaagctcctctttgcaatcgatcagtttgttggatagtggattctgccatctcaatgtcttatgtgagaaactggaagatctatatgtaagttgcagaatttattctagtggaacatcggtgaatatttctgctccaaatctcaaacactttaggtggtggggaaatttgatgagtcatctaaatgttggaaatttaatgcgtttagaaaaagttgagctttttctatcccctaaagtagatgactttgacagcctattggaggttctttctggtatccgcaggactaaagtttttaatctagatgggatgactatgaaggtaaagaggcttatccctttcactccctcagtcttgttcatgtggctaagatatggacagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

347

Amino Acids

40.02

Weight (kDa)

9.23

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 1 cut(s) 940
AclWI GGATC 3 cut(s) 331, 344, 590
AcsI RAATTY 5 cut(s) 568, 649, 759, 826, 853
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 922
AgsI TTSAA 6 cut(s) 154, 236, 497, 623, 646, 662
AhlI ACTAGT 1 cut(s) 376
AjiI CACGTC 1 cut(s) 111
AjnI CCWGG 1 cut(s) 21
AloI GAACNNNNNNTCC 2 cut(s) 574, 606
AluBI AGCT 5 cut(s) 130, 143, 200, 666, 880
AluI AGCT 5 cut(s) 130, 143, 200, 666, 880
Alw26I GTCTC 3 cut(s) 81, 334, 481
AlwI GGATC 3 cut(s) 331, 344, 590
ApoI RAATTY 5 cut(s) 568, 649, 759, 826, 853
Asp700I GAANNNNTTC 2 cut(s) 627, 763
AspS9I GGNCC 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 70, 793
AvaII GGWCC 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 504
BamHI GGATCC 1 cut(s) 336
BauI CACGAG 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 567
BccI CCATC 3 cut(s) 154, 717, 959
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 1 cut(s) 947
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 3 cut(s) 81, 334, 481
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 3 cut(s) 377, 768, 962
BfmI CTRYAG 1 cut(s) 399
BfuI GTATCC 1 cut(s) 947
BglII AGATCT 1 cut(s) 739
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 462
BmgBI CACGTC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 2 cut(s) 338, 464
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 2 cut(s) 157, 447
BpiI GAAGAC 1 cut(s) 567
BpmI CTGGAG 1 cut(s) 44
BpuEI CTTGAG 2 cut(s) 463, 626
Bsa29I ATCGAT 1 cut(s) 680
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 922
Bse1I ACTGG 2 cut(s) 410, 738
Bse3DI GCAATG 2 cut(s) 364, 425
BseBI CCWGG 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 680
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 975
BseLI CCNNNNNNNGG 1 cut(s) 922
BseMI GCAATG 2 cut(s) 364, 425
BseMII CTCAG 2 cut(s) 449, 1023
BseNI ACTGG 2 cut(s) 410, 738
BseRI GAGGAG 2 cut(s) 163, 658
BseSI GKGCMC 1 cut(s) 504
Bsh1236I CGCG 1 cut(s) 267
BshVI ATCGAT 1 cut(s) 680
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 922
BsmAI GTCTC 3 cut(s) 81, 334, 481
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 6 cut(s) 37, 336, 385, 582, 681, 739
BspACI CCGC 1 cut(s) 940
BspCNI CTCAG 2 cut(s) 450, 1022
BspDI ATCGAT 1 cut(s) 680
BspFNI CGCG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 338, 464
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 3 cut(s) 331, 344, 590
BsrDI GCAATG 2 cut(s) 364, 425
BsrI ACTGG 2 cut(s) 410, 738
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 6 cut(s) 37, 336, 385, 582, 681, 739
BssSI CACGAG 1 cut(s) 331
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 1041
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 4 cut(s) 201, 458, 1009, 1028
BstENI CCTNNNNNAGG 1 cut(s) 920
BstF5I GGATG 1 cut(s) 975
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 6 cut(s) 40, 339, 388, 585, 684, 742
BstMAI GTCTC 3 cut(s) 81, 334, 481
BstMBI GATC 6 cut(s) 37, 336, 385, 582, 681, 739
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 504
BstUI CGCG 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 3 cut(s) 336, 582, 739
BstYI RGATCY 3 cut(s) 336, 582, 739
Bsu15I ATCGAT 1 cut(s) 680
BsuI GTATCC 1 cut(s) 947
BsuTUI ATCGAT 1 cut(s) 680
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 975
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 40, 396
Cac8I GCNNGC 1 cut(s) 198
CciI TCATGA 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 462
ClaI ATCGAT 1 cut(s) 680
Csp6I GTAC 1 cut(s) 226
CviAII CATG 6 cut(s) 187, 284, 435, 519, 588, 1021
CviJI RGCY 8 cut(s) 130, 143, 200, 666, 880, 915, 991, 1027
CviKI_1 RGCY 8 cut(s) 130, 143, 200, 666, 880, 915, 991, 1027
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 4 cut(s) 201, 458, 1009, 1028
DpnI GATC 6 cut(s) 39, 338, 387, 584, 683, 741
DpnII GATC 6 cut(s) 37, 336, 385, 582, 681, 739
Eco47I GGWCC 1 cut(s) 462
EcoNI CCTNNNNNAGG 1 cut(s) 920
EcoO109I RGGNCCY 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 440
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 6 cut(s) 190, 287, 438, 522, 591, 1024
FalI AAGNNNNNCTT 4 cut(s) 655, 687, 864, 896
FaqI GGGAC 1 cut(s) 448
FatI CATG 6 cut(s) 186, 283, 434, 518, 587, 1020
FbaI TGATCA 1 cut(s) 385
FokI GGATG 1 cut(s) 982
FspBI CTAG 3 cut(s) 377, 768, 962
GsuI CTGGAG 1 cut(s) 44
Hin1II CATG 6 cut(s) 190, 287, 438, 522, 591, 1024
HinfI GANTC 4 cut(s) 183, 324, 702, 835
HphI GGTGA 2 cut(s) 70, 793
Hpy188I TCNGA 2 cut(s) 323, 459
Hpy188III TCNNGA 7 cut(s) 44, 177, 187, 340, 442, 605, 962
HpyAV CCTTC 1 cut(s) 973
HpyCH4III ACNGT 1 cut(s) 1041
HpyCH4IV ACGT 2 cut(s) 110, 238
HpyCH4V TGCA 8 cut(s) 123, 357, 401, 438, 576, 597, 676, 756
HpyF3I CTNAG 4 cut(s) 201, 458, 1009, 1028
HpySE526I ACGT 2 cut(s) 110, 238
Hsp92II CATG 6 cut(s) 190, 287, 438, 522, 591, 1024
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 6 cut(s) 37, 336, 385, 582, 681, 739
LmnI GCTCC 4 cut(s) 127, 148, 671, 799
LweI GCATC 2 cut(s) 157, 447
MaeI CTAG 3 cut(s) 377, 768, 962
MaeII ACGT 2 cut(s) 110, 238
MaeIII GTNAC 1 cut(s) 392
MalI GATC 6 cut(s) 39, 338, 387, 584, 683, 741
MboI GATC 6 cut(s) 37, 336, 385, 582, 681, 739
MboII GAAGA 4 cut(s) 32, 192, 572, 749
MflI RGATCY 3 cut(s) 336, 582, 739
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 6 cut(s) 568, 611, 649, 759, 826, 853
MlyI GAGTC 1 cut(s) 844
MmeI TCCRAC 3 cut(s) 397, 672, 829
Mph1103I ATGCAT 1 cut(s) 440
MroXI GAANNNNTTC 2 cut(s) 627, 763
MseI TTAA 5 cut(s) 92, 159, 536, 857, 957
MslI CAYNNNNRTG 3 cut(s) 288, 714, 843
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 267
NdeII GATC 6 cut(s) 37, 336, 385, 582, 681, 739
NlaIII CATG 6 cut(s) 190, 287, 438, 522, 591, 1024
NlaIV GGNNCC 2 cut(s) 338, 464
NmuCI GTSAC 1 cut(s) 392
NsiI ATGCAT 1 cut(s) 440
PagI TCATGA 1 cut(s) 186
PdmI GAANNNNTTC 2 cut(s) 627, 763
PfeI GAWTC 3 cut(s) 183, 324, 702
PleI GAGTC 1 cut(s) 843
PpsI GAGTC 1 cut(s) 843
PpuMI RGGWCCY 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 338, 464
PspPI GGNCC 1 cut(s) 462
PspPPI RGGWCCY 1 cut(s) 462
PstI CTGCAG 1 cut(s) 403
PsuI RGATCY 3 cut(s) 336, 582, 739
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 3 cut(s) 288, 714, 843
SaqAI TTAA 5 cut(s) 92, 159, 536, 857, 957
Sau3AI GATC 6 cut(s) 37, 336, 385, 582, 681, 739
Sau96I GGNCC 1 cut(s) 462
SchI GAGTC 1 cut(s) 844
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 2 cut(s) 157, 447
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 462
SmiMI CAYNNNNRTG 3 cut(s) 288, 714, 843
SmlI CTYRAG 2 cut(s) 478, 605
SmoI CTYRAG 2 cut(s) 478, 605
SpeI ACTAGT 1 cut(s) 376
Sse9I AATT 6 cut(s) 568, 611, 649, 759, 826, 853
SsiI CCGC 1 cut(s) 940
SspI AATATT 1 cut(s) 787
SspMI CTAG 3 cut(s) 377, 768, 962
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 1041
TaiI ACGT 2 cut(s) 113, 241
TaqI TCGA 3 cut(s) 178, 363, 680
TasI AATT 6 cut(s) 568, 611, 649, 759, 826, 853
TfiI GAWTC 3 cut(s) 183, 324, 702
Tru1I TTAA 5 cut(s) 92, 159, 536, 857, 957
Tru9I TTAA 5 cut(s) 92, 159, 536, 857, 957
TscAI CASTG 2 cut(s) 40, 403
TseFI GTSAC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 5 cut(s) 17, 175, 300, 992, 1009
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 2 cut(s) 40, 403
VpaK11BI GGWCC 1 cut(s) 462
XagI CCTNNNNNAGG 1 cut(s) 920
XapI RAATTY 5 cut(s) 568, 649, 759, 826, 853
XbaI TCTAGA 1 cut(s) 961
XmnI GAANNNNTTC 2 cut(s) 627, 763
XspI CTAG 3 cut(s) 377, 768, 962
Zsp2I ATGCAT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.