Rmu_sc0005137.1_g000022

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005137.1
OG0000155
Physical Location & Seq
Reverse (-)
71831 .. 73395
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005137.1_g000022.1.cds

Sequence Viewer

Length: 1095 bp
atgcagggagctttacctatcagctccatcattgaacttctccaagtgatcgaactagtttttgatcaaaatcacactgcagtccgtaagttcccattgccctcatgcatctggatttctacttctctgaggtccctattggtagtctcaagttatgtgattattcaagtgccctccttttctttctcatgtaatctttattccttaaagttgagaggcgtaataatagaagacgagaattttagcaaatggatctcatgttcgtgcaaatgtcttgaggaattatcgcttgaaaatgttcgtggcggagggttgaaaaatctcactattgaaagctcctctttgcaatcgatcagtttgttggatagtggattctgccatctcaatgtcttatgtgagaaacttgaagatctatatgtaagttgcagaatttattctagtgggacatcgttgaatatttctgctccaaatctcaaacacttaaggtggaggcgaattttgatgaatcatgcaaatgttggaaatttaacgcgtttagaaaaagttgagctttttcaagtttttctatctcctgaagtagatgactttgacagcctattggaggttctttctggtatccgcaggactaaagtttttaatctagatgggatgactatgaaggctgtgttcaaggaaggttccatgccattaccattagatgagattagtaatttgggcattcatatttacagcttggatgatgacctagtcccggcaatggtctctcttcttagaggaatgactaatttgaatactctctggataacatctgccagtttgccagcctatatgcgctactctaaggttgatgtatctgggtttaatatgggtttttggaaatcccaaaggcttgctttcgtctctcaacttaaggaggtaagaatagagcttgcaaatgggagtaatgagatcgagttagcaaggtatttgctgaagcatgctcataatttgaagaaaatggtcctactttatccgccccagcagtcccatcttttaaagaagattatcgaagagaagattgtttctactgccaggcttgtcttgcagaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

364

Amino Acids

41.14

Weight (kDa)

8.53

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 532
AciI CCGC 3 cut(s) 306, 619, 1013
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 4 cut(s) 238, 429, 495, 523
AcuI CTGAAG 2 cut(s) 594, 992
AfiI CCNNNNNNNGG 3 cut(s) 601, 751, 757
AflII CTTAAG 2 cut(s) 481, 908
AflIII ACRYGT 1 cut(s) 530
AhlI ACTAGT 1 cut(s) 55
AjnI CCWGG 1 cut(s) 1070
AloI GAACNNNNNNTCC 2 cut(s) 244, 276
AluBI AGCT 6 cut(s) 11, 24, 336, 550, 732, 928
AluI AGCT 6 cut(s) 11, 24, 336, 550, 732, 928
Alw26I GTCTC 3 cut(s) 151, 766, 904
AlwI GGATC 1 cut(s) 260
ApoI RAATTY 4 cut(s) 238, 429, 495, 523
Asp700I GAANNNNTTC 2 cut(s) 297, 433
AspLEI GCGC 1 cut(s) 834
AspS9I GGNCC 2 cut(s) 132, 1000
AsuC2I CCSGG 1 cut(s) 752
AvaII GGWCC 2 cut(s) 132, 1000
BaeGI GKGCMC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 237
BccI CCATC 4 cut(s) 35, 387, 638, 1035
BciT130I CCWGG 1 cut(s) 1072
BciVI GTATCC 1 cut(s) 626
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 1 cut(s) 752
BcoDI GTCTC 3 cut(s) 151, 766, 904
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 4 cut(s) 56, 438, 641, 746
BfmI CTRYAG 1 cut(s) 78
BfrI CTTAAG 2 cut(s) 481, 908
BfuI GTATCC 1 cut(s) 626
BglII AGATCT 1 cut(s) 409
Bme1390I CCNGG 2 cut(s) 752, 1072
Bme18I GGWCC 2 cut(s) 132, 1000
BmgT120I GGNCC 2 cut(s) 132, 1000
BmiI GGNNCC 2 cut(s) 134, 679
BmrFI CCNGG 2 cut(s) 752, 1072
BmsI GCATC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 133, 296
BpuMI CCSGG 1 cut(s) 752
Bsa29I ATCGAT 1 cut(s) 350
BsaBI GATNNNNATC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 766
Bsc4I CCNNNNNNNGG 3 cut(s) 601, 751, 757
Bse1I ACTGG 1 cut(s) 813
Bse3DI GCAATG 2 cut(s) 95, 762
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 1072
BseCI ATCGAT 1 cut(s) 350
BseGI GGATG 2 cut(s) 654, 742
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 3 cut(s) 601, 751, 757
BseMI GCAATG 2 cut(s) 95, 762
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 813
BseRI GAGGAG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 1017
Bsh1236I CGCG 1 cut(s) 532
BshVI ATCGAT 1 cut(s) 350
BsiSI CCGG 1 cut(s) 752
BslFI GGGAC 4 cut(s) 118, 457, 734, 1009
BslI CCNNNNNNNGG 3 cut(s) 601, 751, 757
BsmAI GTCTC 3 cut(s) 151, 766, 904
BsmBI CGTCTC 1 cut(s) 904
BsmFI GGGAC 4 cut(s) 118, 457, 734, 1009
BsmI GAATGC 1 cut(s) 717
Bso31I GGTCTC 1 cut(s) 766
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 6 cut(s) 48, 64, 252, 351, 409, 948
BspACI CCGC 3 cut(s) 306, 619, 1013
BspCNI CTCAG 1 cut(s) 120
BspDI ATCGAT 1 cut(s) 350
BspFNI CGCG 1 cut(s) 532
BspLI GGNNCC 2 cut(s) 134, 679
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 1 cut(s) 260
BspTI CTTAAG 2 cut(s) 481, 908
BspTNI GGTCTC 1 cut(s) 766
BsrDI GCAATG 2 cut(s) 95, 762
BsrI ACTGG 1 cut(s) 813
BssMI GATC 6 cut(s) 48, 64, 252, 351, 409, 948
Bst2UI CCWGG 1 cut(s) 1072
Bst6I CTCTTC 2 cut(s) 771, 1044
BstAFI CTTAAG 2 cut(s) 481, 908
BstC8I GCNNGC 4 cut(s) 822, 891, 930, 978
BstDEI CTNAG 3 cut(s) 128, 770, 840
BstENI CCTNNNNNAGG 1 cut(s) 599
BstF5I GGATG 2 cut(s) 654, 742
BstFNI CGCG 1 cut(s) 532
BstHHI GCGC 1 cut(s) 834
BstKTI GATC 6 cut(s) 51, 67, 255, 354, 412, 951
BstMAI GTCTC 3 cut(s) 151, 766, 904
BstMBI GATC 6 cut(s) 48, 64, 252, 351, 409, 948
BstMWI GCNNNNNNNGC 1 cut(s) 1081
BstNI CCWGG 1 cut(s) 1072
BstNSI RCATGY 1 cut(s) 980
BstSCI CCNGG 2 cut(s) 750, 1070
BstSFI CTRYAG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 174
BstUI CGCG 1 cut(s) 532
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 252, 409
BstYI RGATCY 2 cut(s) 252, 409
Bsu15I ATCGAT 1 cut(s) 350
BsuI GTATCC 1 cut(s) 626
BsuTUI ATCGAT 1 cut(s) 350
BtsCI GGATG 2 cut(s) 654, 742
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 4 cut(s) 822, 891, 930, 978
CfoI GCGC 1 cut(s) 834
Cfr13I GGNCC 2 cut(s) 132, 1000
ClaI ATCGAT 1 cut(s) 350
CviAII CATG 6 cut(s) 105, 189, 258, 509, 682, 977
DdeI CTNAG 3 cut(s) 128, 770, 840
DpnI GATC 6 cut(s) 50, 66, 254, 353, 411, 950
DpnII GATC 6 cut(s) 48, 64, 252, 351, 409, 948
DraI TTTAAA 1 cut(s) 1035
Eam1104I CTCTTC 2 cut(s) 771, 1044
EarI CTCTTC 2 cut(s) 771, 1044
EciI GGCGGA 2 cut(s) 321, 1002
Eco31I GGTCTC 1 cut(s) 766
Eco47I GGWCC 2 cut(s) 132, 1000
Eco57I CTGAAG 2 cut(s) 594, 992
EcoNI CCTNNNNNAGG 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 1070
EcoT22I ATGCAT 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 904
FaeI CATG 6 cut(s) 108, 192, 261, 512, 685, 980
FalI AAGNNNNNCTT 6 cut(s) 325, 357, 534, 566, 877, 909
FaqI GGGAC 4 cut(s) 118, 457, 734, 1009
FatI CATG 6 cut(s) 104, 188, 257, 508, 681, 976
FbaI TGATCA 1 cut(s) 64
FokI GGATG 2 cut(s) 661, 749
FspBI CTAG 4 cut(s) 56, 438, 641, 746
GlaI GCGC 1 cut(s) 833
GsaI CCCAGC 1 cut(s) 1021
HapII CCGG 1 cut(s) 752
HhaI GCGC 1 cut(s) 834
Hin1II CATG 6 cut(s) 108, 192, 261, 512, 685, 980
Hin6I GCGC 1 cut(s) 832
HinP1I GCGC 1 cut(s) 832
HinfI GANTC 2 cut(s) 372, 505
HpaII CCGG 1 cut(s) 752
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 5 cut(s) 112, 275, 572, 641, 799
HpyAV CCTTC 2 cut(s) 652, 668
HpyCH4V TGCA 9 cut(s) 4, 80, 108, 267, 346, 426, 512, 932, 1084
HpyF10VI GCNNNNNNNGC 1 cut(s) 1081
HpyF3I CTNAG 3 cut(s) 128, 770, 840
Hsp92II CATG 6 cut(s) 108, 192, 261, 512, 685, 980
HspAI GCGC 1 cut(s) 832
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 6 cut(s) 48, 64, 252, 351, 409, 948
LmnI GCTCC 4 cut(s) 8, 29, 341, 469
LweI GCATC 1 cut(s) 117
MaeI CTAG 4 cut(s) 56, 438, 641, 746
MalI GATC 6 cut(s) 50, 66, 254, 353, 411, 950
MboI GATC 6 cut(s) 48, 64, 252, 351, 409, 948
MboII GAAGA 7 cut(s) 242, 419, 758, 1003, 1051, 1061, 1066
MflI RGATCY 2 cut(s) 252, 409
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 8 cut(s) 238, 281, 429, 495, 523, 709, 784, 985
MluI ACGCGT 1 cut(s) 530
MmeI TCCRAC 2 cut(s) 342, 499
Mph1103I ATGCAT 1 cut(s) 110
MroXI GAANNNNTTC 2 cut(s) 297, 433
MseI TTAA 7 cut(s) 206, 482, 527, 636, 861, 909, 1034
MslI CAYNNNNRTG 3 cut(s) 262, 384, 513
MspCI CTTAAG 2 cut(s) 481, 908
MspI CCGG 1 cut(s) 752
MspR9I CCNGG 2 cut(s) 752, 1072
Mva1269I GAATGC 1 cut(s) 717
MvaI CCWGG 1 cut(s) 1072
MvnI CGCG 1 cut(s) 532
MwoI GCNNNNNNNGC 1 cut(s) 1081
NciI CCSGG 1 cut(s) 752
NdeII GATC 6 cut(s) 48, 64, 252, 351, 409, 948
NlaIII CATG 6 cut(s) 108, 192, 261, 512, 685, 980
NlaIV GGNNCC 2 cut(s) 134, 679
NsiI ATGCAT 1 cut(s) 110
NspI RCATGY 1 cut(s) 980
PaeI GCATGC 1 cut(s) 980
PctI GAATGC 1 cut(s) 717
PdmI GAANNNNTTC 2 cut(s) 297, 433
PfeI GAWTC 2 cut(s) 372, 505
PflFI GACNNNGTC 1 cut(s) 746
PpuMI RGGWCCY 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 1070
PspFI CCCAGC 1 cut(s) 1017
PspGI CCWGG 1 cut(s) 1070
PspN4I GGNNCC 2 cut(s) 134, 679
PspPI GGNCC 2 cut(s) 132, 1000
PspPPI RGGWCCY 1 cut(s) 132
PstI CTGCAG 1 cut(s) 82
PsuI RGATCY 2 cut(s) 252, 409
PsyI GACNNNGTC 1 cut(s) 746
RseI CAYNNNNRTG 3 cut(s) 262, 384, 513
SaqAI TTAA 7 cut(s) 206, 482, 527, 636, 861, 909, 1034
Sau3AI GATC 6 cut(s) 48, 64, 252, 351, 409, 948
Sau96I GGNCC 2 cut(s) 132, 1000
ScrFI CCNGG 2 cut(s) 752, 1072
SduI GDGCHC 1 cut(s) 174
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 2 cut(s) 132, 1000
SmiMI CAYNNNNRTG 3 cut(s) 262, 384, 513
SmlI CTYRAG 4 cut(s) 148, 275, 481, 908
SmoI CTYRAG 4 cut(s) 148, 275, 481, 908
SpeI ACTAGT 1 cut(s) 55
SphI GCATGC 1 cut(s) 980
Sse9I AATT 8 cut(s) 238, 281, 429, 495, 523, 709, 784, 985
SsiI CCGC 3 cut(s) 306, 619, 1013
SspI AATATT 1 cut(s) 457
SspMI CTAG 4 cut(s) 56, 438, 641, 746
StyD4I CCNGG 2 cut(s) 750, 1070
TaqI TCGA 4 cut(s) 51, 350, 951, 1047
TasI AATT 8 cut(s) 238, 281, 429, 495, 523, 709, 784, 985
TfiI GAWTC 2 cut(s) 372, 505
Tru1I TTAA 7 cut(s) 206, 482, 527, 636, 861, 909, 1034
Tru9I TTAA 7 cut(s) 206, 482, 527, 636, 861, 909, 1034
TscAI CASTG 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 518, 671, 710
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 82
Tth111I GACNNNGTC 1 cut(s) 746
Vha464I CTTAAG 2 cut(s) 481, 908
VpaK11BI GGWCC 2 cut(s) 132, 1000
XagI CCTNNNNNAGG 1 cut(s) 599
XapI RAATTY 4 cut(s) 238, 429, 495, 523
XbaI TCTAGA 1 cut(s) 640
XceI RCATGY 1 cut(s) 980
XmnI GAANNNNTTC 2 cut(s) 297, 433
XspI CTAG 4 cut(s) 56, 438, 641, 746
Zsp2I ATGCAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.