Rorug03G0139000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000155
Physical Location & Seq
Reverse (-)
11412880 .. 11413791
912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0139000.1

Sequence Viewer

Length: 912 bp
ATGCCGAACCATATTCTCTCTTGCTTCAAGTGTCCTAATAAACTTTCAAATAGAATTGATAAAGAATGTAGTAATTTCTTTTGGGGTCATTCTAGATCACCTATTGCTTGGTCTCAAGCGTCCCTGCTTAAATCCAAAGGTGGGTTGGGAATTCGTACAGCTTCTTGTTTTAACAAAGTTGCTTTAGCTAAATTAGGTTGGAAGATTTTGACTCAACCGCAGAATTGGTGGGTCCAACTGGTATCCAAAAAATACTTACTGAGGTCTACTTTTCTGGAAACTAGAAAGAAGTCTTCTAATTCTGTTGCTTGGAAAGGAATTTTGGATGCTAGAGATTTACTTTCTCAAGGCCCTAGGTGGATAGTTGGAAACGGGGAATCGATTCTTTTTTGGTCTTATAATTGGGTTTTTCCTTTTCCTCTTTCTAGTCTTATACTTATTGAGGATAGGAATCAGTTAAACTATTCCCTTAAAGTTGCAGAGTTTATTCACAATCATACTTGGGACAAAATAAAACTTTCTTCCCTTTTACCTCCTGATGTTGTGGACAAAATTTGGGCTATTCCTCTTCCAATTTATAATTATCCAGACTCTTTTGTTTGGGGCCCTTCCAGTTCAGGTCTGTTTATAGTCAAATCGGCGTCCTGGCTTCAGTATAATGGTATACCGGATTGTTCCAAAGCATCTTTACTTTCCAAAGTTTGGTCATTAAATGTTCCTCCAAAAATTAAGATTTTTGGTTGGATGCTTATTAGAGGTAGGCTTAAAACGAGAGATTCACTTTCAATTTTTAACCATAATATTAATCCTTCGTGCCCTTTCTGTAACGATCATATTGAAAATCTAGATCATCTTTTTTTGCGTTGCTTTTTGCTTCTCAGTTATGGTCTTTTCTTCTCTCCCAATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

303

Amino Acids

34.74

Weight (kDa)

9.66

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 225 - 289 6.5e-16 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 399, 579
AccB7I CCANNNNNTGG 1 cut(s) 702
AccI GTMKAC 2 cut(s) 266, 664
AciI CCGC 1 cut(s) 218
AcsI RAATTY 3 cut(s) 150, 318, 552
AcuI CTGAAG 1 cut(s) 635
AcyI GRCGYC 1 cut(s) 641
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 141, 702
AgsI TTSAA 4 cut(s) 28, 48, 786, 839
AjnI CCWGG 1 cut(s) 644
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 2 cut(s) 161, 188
AluI AGCT 2 cut(s) 161, 188
Alw26I GTCTC 1 cut(s) 117
AoxI GGCC 2 cut(s) 349, 604
ApaI GGGCCC 1 cut(s) 608
ApoI RAATTY 3 cut(s) 150, 318, 552
AseI ATTAAT 1 cut(s) 804
Asp700I GAANNNNTTC 1 cut(s) 381
AspA2I CCTAGG 1 cut(s) 353
AspS9I GGNCC 4 cut(s) 232, 350, 604, 605
AsuHPI GGTGA 1 cut(s) 90
AvaII GGWCC 1 cut(s) 232
AvrII CCTAGG 1 cut(s) 353
BaeGI GKGCMC 2 cut(s) 608, 818
BanII GRGCYC 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 285
BciT130I CCWGG 1 cut(s) 646
BciVI GTATCC 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 6 cut(s) 93, 282, 330, 354, 426, 845
BfuI GTATCC 1 cut(s) 253
BlnI CCTAGG 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 646
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 4 cut(s) 232, 350, 604, 605
BmiI GGNNCC 3 cut(s) 233, 605, 606
BmrFI CCNGG 1 cut(s) 646
BmsI GCATC 3 cut(s) 316, 692, 735
BpiI GAAGAC 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 99, 330
Bsa29I ATCGAT 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 641
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 667
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 702
Bse1I ACTGG 2 cut(s) 243, 612
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 1 cut(s) 646
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 2 cut(s) 331, 750
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 2 cut(s) 141, 702
BseMII CTCAG 2 cut(s) 251, 892
BseNI ACTGG 2 cut(s) 243, 612
BseSI GKGCMC 2 cut(s) 608, 818
BshFI GGCC 2 cut(s) 351, 606
BshVI ATCGAT 1 cut(s) 380
BsiSI CCGG 1 cut(s) 668
BslFI GGGAC 2 cut(s) 106, 518
BslI CCNNNNNNNGG 2 cut(s) 141, 702
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 2 cut(s) 106, 518
BsnI GGCC 2 cut(s) 351, 606
Bso31I GGTCTC 1 cut(s) 117
Bsp120I GGGCCC 1 cut(s) 604
Bsp1286I GDGCHC 2 cut(s) 608, 818
Bsp143I GATC 3 cut(s) 95, 829, 847
BspACI CCGC 1 cut(s) 218
BspANI GGCC 2 cut(s) 351, 606
BspCNI CTCAG 2 cut(s) 252, 891
BspDI ATCGAT 1 cut(s) 380
BspLI GGNNCC 3 cut(s) 233, 605, 606
BspTNI GGTCTC 1 cut(s) 117
BsrI ACTGG 2 cut(s) 243, 612
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 3 cut(s) 95, 829, 847
BssNAI GTATAC 1 cut(s) 665
BssNI GRCGYC 1 cut(s) 641
BssT1I CCWWGG 1 cut(s) 353
Bst1107I GTATAC 1 cut(s) 665
Bst2UI CCWGG 1 cut(s) 646
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 1 cut(s) 641
BstDEI CTNAG 2 cut(s) 260, 878
BstF5I GGATG 2 cut(s) 331, 750
BstKTI GATC 3 cut(s) 98, 832, 850
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 3 cut(s) 95, 829, 847
BstNI CCWGG 1 cut(s) 646
BstSCI CCNGG 1 cut(s) 644
BstSLI GKGCMC 2 cut(s) 608, 818
BstV2I GAAGAC 1 cut(s) 285
BstZ17I GTATAC 1 cut(s) 665
Bsu15I ATCGAT 1 cut(s) 380
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 2 cut(s) 351, 606
BsuTUI ATCGAT 1 cut(s) 380
BtsCI GGATG 2 cut(s) 331, 750
Cfr13I GGNCC 4 cut(s) 232, 350, 604, 605
ClaI ATCGAT 1 cut(s) 380
CseI GACGC 2 cut(s) 108, 630
Csp6I GTAC 1 cut(s) 156
CviJI RGCY 7 cut(s) 161, 188, 351, 560, 606, 649, 763
CviKI_1 RGCY 7 cut(s) 161, 188, 351, 560, 606, 649, 763
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 2 cut(s) 260, 878
DpnI GATC 3 cut(s) 97, 831, 849
DpnII GATC 3 cut(s) 95, 829, 847
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 608
Eco31I GGTCTC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 635
EcoO109I RGGNCCY 3 cut(s) 350, 604, 605
EcoRI GAATTC 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 608
ErhI CCWWGG 1 cut(s) 353
FaqI GGGAC 2 cut(s) 106, 518
FblI GTMKAC 2 cut(s) 266, 664
FokI GGATG 2 cut(s) 338, 757
FriOI GRGCYC 1 cut(s) 608
FspBI CTAG 6 cut(s) 93, 282, 330, 354, 426, 845
HaeIII GGCC 2 cut(s) 351, 606
HapII CCGG 1 cut(s) 668
HgaI GACGC 2 cut(s) 108, 630
Hin1I GRCGYC 1 cut(s) 641
HinfI GANTC 6 cut(s) 211, 377, 382, 451, 590, 776
HpaII CCGG 1 cut(s) 668
HphI GGTGA 1 cut(s) 90
Hpy166II GTNNAC 3 cut(s) 267, 547, 665
Hpy188III TCNNGA 6 cut(s) 93, 275, 536, 587, 845, 909
Hpy8I GTNNAC 3 cut(s) 267, 547, 665
HpyAV CCTTC 2 cut(s) 618, 819
HpyCH4V TGCA 1 cut(s) 479
HpyF3I CTNAG 2 cut(s) 260, 878
Hsp92I GRCGYC 1 cut(s) 641
Kzo9I GATC 3 cut(s) 95, 829, 847
LweI GCATC 3 cut(s) 316, 692, 735
MaeI CTAG 6 cut(s) 93, 282, 330, 354, 426, 845
MaeIII GTNAC 1 cut(s) 824
MalI GATC 3 cut(s) 97, 831, 849
MboI GATC 3 cut(s) 95, 829, 847
MboII GAAGA 5 cut(s) 214, 285, 513, 560, 886
MhlI GDGCHC 2 cut(s) 608, 818
MlyI GAGTC 2 cut(s) 205, 584
MmeI TCCRAC 4 cut(s) 179, 259, 346, 722
MnlI CCTC 7 cut(s) 255, 429, 436, 543, 576, 729, 749
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 9 cut(s) 129, 171, 458, 471, 710, 729, 765, 792, 804
MspI CCGG 1 cut(s) 668
MspR9I CCNGG 1 cut(s) 646
MvaI CCWGG 1 cut(s) 646
NdeII GATC 3 cut(s) 95, 829, 847
NlaIV GGNNCC 3 cut(s) 233, 605, 606
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 4 cut(s) 377, 382, 451, 776
PflMI CCANNNNNTGG 1 cut(s) 702
PleI GAGTC 2 cut(s) 205, 584
PpsI GAGTC 2 cut(s) 205, 584
PshBI ATTAAT 1 cut(s) 804
PsiI TTATAA 2 cut(s) 399, 579
Psp6I CCWGG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 3 cut(s) 233, 605, 606
PspOMI GGGCCC 1 cut(s) 604
PspPI GGNCC 4 cut(s) 232, 350, 604, 605
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SaqAI TTAA 9 cut(s) 129, 171, 458, 471, 710, 729, 765, 792, 804
Sau3AI GATC 3 cut(s) 95, 829, 847
Sau96I GGNCC 4 cut(s) 232, 350, 604, 605
SchI GAGTC 2 cut(s) 205, 584
ScrFI CCNGG 1 cut(s) 646
SduI GDGCHC 2 cut(s) 608, 818
SfaNI GCATC 3 cut(s) 316, 692, 735
SinI GGWCC 1 cut(s) 232
SmlI CTYRAG 2 cut(s) 114, 345
SmoI CTYRAG 2 cut(s) 114, 345
SsiI CCGC 1 cut(s) 218
SspI AATATT 1 cut(s) 802
SspMI CTAG 6 cut(s) 93, 282, 330, 354, 426, 845
StyD4I CCNGG 1 cut(s) 644
StyI CCWWGG 1 cut(s) 353
TaqI TCGA 1 cut(s) 380
TfiI GAWTC 4 cut(s) 377, 382, 451, 776
Tru1I TTAA 9 cut(s) 129, 171, 458, 471, 710, 729, 765, 792, 804
Tru9I TTAA 9 cut(s) 129, 171, 458, 471, 710, 729, 765, 792, 804
Van91I CCANNNNNTGG 1 cut(s) 702
VpaK11BI GGWCC 1 cut(s) 232
VspI ATTAAT 1 cut(s) 804
XapI RAATTY 3 cut(s) 150, 318, 552
XbaI TCTAGA 2 cut(s) 92, 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmaJI CCTAGG 1 cut(s) 353
XmiI GTMKAC 2 cut(s) 266, 664
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 6 cut(s) 93, 282, 330, 354, 426, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.