Rmu_sc0010415.1_g000002

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010415.1
Physical Location & Seq
Forward (+)
5014 .. 5388
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010415.1_g000002.1.cds

Sequence Viewer

Length: 375 bp
atggacaagaagcaaaagttaaaggcaactccaagttgtagtgaggtagacagattcagtgatctgccagacggagttgcccgtcacattctctccttccttatcataccagacgtcgctcgttttggctatgtgtccaaaagatgcggacgacttcatctgtcgactcccacattgaaaattgaaggattttcgagggagaggttatcttcattggataagatctcaaggttgtggaatgctttggatcgtgttatgaatcgtcgtggggatgataagatacacacctttcgttttcgtagcttctgcagagattgggactctagaatgggttgtgtattaagtatggagtgtgtatttaaaacttctctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

14.4

Weight (kDa)

9.76

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AccI GTMKAC 2 cut(s) 48, 164
AciI CCGC 1 cut(s) 147
AclWI GGATC 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 114
AgsI TTSAA 2 cut(s) 178, 185
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
AlwI GGATC 1 cut(s) 255
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 307
BglII AGATCT 1 cut(s) 222
BmsI GCATC 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
BseGI GGATG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 61, 222, 247
BspACI CCGC 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 311
BspPI GGATC 1 cut(s) 255
BssMI GATC 3 cut(s) 61, 222, 247
BssNI GRCGYC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 114
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 3 cut(s) 64, 225, 250
BstMBI GATC 3 cut(s) 61, 222, 247
BstSFI CTRYAG 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 64
CviJI RGCY 2 cut(s) 129, 303
CviKI_1 RGCY 2 cut(s) 129, 303
DpnI GATC 3 cut(s) 63, 224, 249
DpnII GATC 3 cut(s) 61, 222, 247
DraI TTTAAA 1 cut(s) 361
FaiI YATR 4 cut(s) 107, 132, 257, 347
FaqI GGGAC 1 cut(s) 332
FblI GTMKAC 2 cut(s) 48, 164
FokI GGATG 1 cut(s) 284
FspBI CTAG 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 4 cut(s) 54, 166, 259, 320
Hpy166II GTNNAC 2 cut(s) 49, 165
Hpy188III TCNNGA 1 cut(s) 324
Hpy8I GTNNAC 2 cut(s) 49, 165
Hpy99I CGWCG 2 cut(s) 119, 267
HpyAV CCTTC 2 cut(s) 106, 179
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 114
Kzo9I GATC 3 cut(s) 61, 222, 247
LpnPI CCDG 2 cut(s) 81, 123
LweI GCATC 1 cut(s) 134
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 83
MalI GATC 3 cut(s) 63, 224, 249
MboI GATC 3 cut(s) 61, 222, 247
MboII GAAGA 1 cut(s) 201
MflI RGATCY 1 cut(s) 222
MluCI AATT 1 cut(s) 180
MlyI GAGTC 2 cut(s) 160, 314
MnlI CCTC 3 cut(s) 37, 189, 195
MseI TTAA 4 cut(s) 20, 341, 360, 373
Mva1269I GAATGC 1 cut(s) 244
NdeII GATC 3 cut(s) 61, 222, 247
NmuCI GTSAC 1 cut(s) 83
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 54, 259
PleI GAGTC 2 cut(s) 160, 314
PpsI GAGTC 2 cut(s) 160, 314
PstI CTGCAG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 222
SalI GTCGAC 1 cut(s) 163
SaqAI TTAA 4 cut(s) 20, 341, 360, 373
Sau3AI GATC 3 cut(s) 61, 222, 247
SchI GAGTC 2 cut(s) 160, 314
SetI ASST 6 cut(s) 48, 117, 206, 233, 290, 305
SfaNI GCATC 1 cut(s) 134
SfcI CTRYAG 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 147
SspMI CTAG 1 cut(s) 324
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 164, 194
TasI AATT 1 cut(s) 180
TfiI GAWTC 2 cut(s) 54, 259
Tru1I TTAA 4 cut(s) 20, 341, 360, 373
Tru9I TTAA 4 cut(s) 20, 341, 360, 373
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 146, 201, 272
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 64
XbaI TCTAGA 1 cut(s) 323
XmiI GTMKAC 2 cut(s) 48, 164
XspI CTAG 1 cut(s) 324
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.