Rh7CG239800

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000155
Physical Location & Seq
Forward (+)
22380870 .. 22381685
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG239800.1

Sequence Viewer

Length: 816 bp
ATGGAGCATAAGAATAAGTCATTGGCAACTGCAACTTCTCAAGCTCAAGGAGCTTCTGCTGACCTCATGGTAGACAGATTGAGTAGTGTTCCATGTGAAGTTGCTCACCATATTCTTTCATTGGTCAGTTTTAAAGATCTCACTCGTGTGGGCAGCGTGTCCAAAAGATGCAGAGAGTTTCATCTATCAACTCCATCATTGAATTTTTCTTCCTTGTTTGGAAACAGGCAGCAGCAATTGAACTTGTTGAATTGTATAGATAGGTATATGATTCGTCGCCGGGAGAATAAGATAAAGAGCTTTTGTATTAAATGGGATTTCTCTGCATTAATTTCAGAAGAGAGTTTCCGAATGATGACTTGGATCCTTATTGCAGTGAGGTGCAATGTTGAAGTGCTTGATCTTGAGTTGAGGTTGAATAGAAAACATGGGGCAACACTTGAATTGCCATCTTGCATCTATTGTTGTGAATCTTTGAGGTCTCTGTTGATCAGGACAGAGACGGTTCTTAAAGCACCCTCCTTTGCTTGTTCCAATAATCTCCAGTACTTGAAGTTGACTAGTGTTAGAATGGATGATGGGTTTGGCAAATGGATCTCATGCTCATGCAAATTCATTAAGGAAGTATTGTTAGAAAATGTTCATGTGGGAAGTTTCACCATTGAAAGCTCGTCTTTGGAATCATTTACATTGGTGTATACCTATAATAGTGACCCCTGCCATTTTAGCATCTCAGGTGAGAAACTTGCAGAGATAAGTATAGAGTGGGAAAATACTCAAATAGTCAAGCTAGCAGCAGTATTACCAAATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

271

Amino Acids

30.78

Weight (kDa)

8.24

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 72, 698
AclWI GGATC 3 cut(s) 358, 371, 602
AcsI RAATTY 2 cut(s) 202, 611
AfaI GTAC 1 cut(s) 548
AgsI TTSAA 8 cut(s) 202, 241, 250, 392, 418, 443, 553, 665
AhlI ACTAGT 1 cut(s) 560
AjuI GAANNNNNNNTTGG 3 cut(s) 37, 343, 375
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 5 cut(s) 44, 53, 300, 669, 790
AluI AGCT 5 cut(s) 44, 53, 300, 669, 790
Alw26I GTCTC 2 cut(s) 486, 494
AlwI GGATC 3 cut(s) 358, 371, 602
ApeKI GCWGC 4 cut(s) 153, 229, 232, 794
ApoI RAATTY 2 cut(s) 202, 611
AseI ATTAAT 1 cut(s) 329
Asp700I GAANNNNTTC 1 cut(s) 639
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 3 cut(s) 98, 649, 749
AsuNHI GCTAGC 1 cut(s) 790
BamHI GGATCC 1 cut(s) 363
BauI CACGAG 1 cut(s) 144
BbvI GCAGC 4 cut(s) 165, 241, 244, 806
BccI CCATC 3 cut(s) 202, 457, 572
BclI TGATCA 1 cut(s) 489
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 486, 494
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 2 cut(s) 561, 791
BglII AGATCT 1 cut(s) 136
BisI GCNGC 4 cut(s) 154, 230, 233, 795
BlsI GCNGC 4 cut(s) 155, 231, 234, 796
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 3 cut(s) 158, 465, 738
BmtI GCTAGC 1 cut(s) 794
BpmI CTGGAG 1 cut(s) 527
BpuEI CTTGAG 3 cut(s) 24, 30, 425
BpuMI CCSGG 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 486
Bse1I ACTGG 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 391
BseGI GGATG 1 cut(s) 580
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 1 cut(s) 544
BseXI GCAGC 4 cut(s) 165, 241, 244, 806
BsiSI CCGG 1 cut(s) 280
BsmAI GTCTC 2 cut(s) 486, 494
BsmBI CGTCTC 1 cut(s) 494
Bso31I GGTCTC 1 cut(s) 486
Bsp143I GATC 5 cut(s) 136, 363, 400, 489, 594
BspCNI CTCAG 1 cut(s) 746
BspLI GGNNCC 1 cut(s) 365
BspOI GCTAGC 1 cut(s) 794
BspPI GGATC 3 cut(s) 358, 371, 602
BspTNI GGTCTC 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 391
BsrI ACTGG 1 cut(s) 544
BssMI GATC 5 cut(s) 136, 363, 400, 489, 594
BssNAI GTATAC 1 cut(s) 699
BssSI CACGAG 1 cut(s) 144
Bst1107I GTATAC 1 cut(s) 699
Bst2BI CACGAG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 1 cut(s) 733
BstF5I GGATG 1 cut(s) 580
BstKTI GATC 5 cut(s) 139, 366, 403, 492, 597
BstMAI GTCTC 2 cut(s) 486, 494
BstMBI GATC 5 cut(s) 136, 363, 400, 489, 594
BstMWI GCNNNNNNNGC 2 cut(s) 50, 726
BstSCI CCNGG 1 cut(s) 279
BstV1I GCAGC 4 cut(s) 165, 241, 244, 806
BstX2I RGATCY 3 cut(s) 136, 363, 594
BstYI RGATCY 3 cut(s) 136, 363, 594
BstZ17I GTATAC 1 cut(s) 699
BtsCI GGATG 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 1 cut(s) 792
Csp6I GTAC 1 cut(s) 547
CviAII CATG 6 cut(s) 67, 93, 428, 600, 606, 644
CviJI RGCY 5 cut(s) 44, 53, 300, 669, 790
CviKI_1 RGCY 5 cut(s) 44, 53, 300, 669, 790
CviQI GTAC 1 cut(s) 547
DdeI CTNAG 1 cut(s) 733
DpnI GATC 5 cut(s) 138, 365, 402, 491, 596
DpnII GATC 5 cut(s) 136, 363, 400, 489, 594
DraI TTTAAA 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 6 cut(s) 70, 96, 431, 603, 609, 647
FalI AAGNNNNNCTT 2 cut(s) 658, 690
FatI CATG 6 cut(s) 66, 92, 427, 599, 605, 643
FbaI TGATCA 1 cut(s) 489
FblI GTMKAC 2 cut(s) 72, 698
Fnu4HI GCNGC 4 cut(s) 154, 230, 233, 795
FokI GGATG 1 cut(s) 587
Fsp4HI GCNGC 4 cut(s) 154, 230, 233, 795
FspBI CTAG 2 cut(s) 561, 791
GluI GCNGC 4 cut(s) 154, 230, 233, 795
GsuI CTGGAG 1 cut(s) 527
HapII CCGG 1 cut(s) 280
Hin1II CATG 6 cut(s) 70, 96, 431, 603, 609, 647
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HinfI GANTC 3 cut(s) 271, 470, 680
HpaII CCGG 1 cut(s) 280
HphI GGTGA 3 cut(s) 98, 649, 749
Hpy166II GTNNAC 3 cut(s) 73, 558, 699
Hpy188I TCNGA 2 cut(s) 337, 350
Hpy188III TCNNGA 2 cut(s) 404, 493
Hpy8I GTNNAC 3 cut(s) 73, 558, 699
Hpy99I CGWCG 1 cut(s) 279
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4V TGCA 8 cut(s) 32, 171, 326, 374, 384, 456, 609, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 726
HpyF3I CTNAG 1 cut(s) 733
Hsp92II CATG 6 cut(s) 70, 96, 431, 603, 609, 647
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 5 cut(s) 136, 363, 400, 489, 594
LmnI GCTCC 2 cut(s) 4, 50
LpnPI CCDG 6 cut(s) 211, 293, 478, 557, 720, 730
Lsp1109I GCAGC 4 cut(s) 165, 241, 244, 806
LweI GCATC 3 cut(s) 158, 465, 738
MaeI CTAG 2 cut(s) 561, 791
MaeIII GTNAC 1 cut(s) 710
MalI GATC 5 cut(s) 138, 365, 402, 491, 596
MboI GATC 5 cut(s) 136, 363, 400, 489, 594
MboII GAAGA 2 cut(s) 201, 350
MfeI CAATTG 1 cut(s) 236
MflI RGATCY 3 cut(s) 136, 363, 594
MluCI AATT 6 cut(s) 202, 236, 250, 330, 443, 611
MnlI CCTC 5 cut(s) 74, 372, 405, 471, 529
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 6 cut(s) 132, 309, 329, 510, 618, 814
MslI CAYNNNNRTG 2 cut(s) 146, 604
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 281
MunI CAATTG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 50, 726
NciI CCSGG 1 cut(s) 281
NdeII GATC 5 cut(s) 136, 363, 400, 489, 594
NheI GCTAGC 1 cut(s) 790
NlaIII CATG 6 cut(s) 70, 96, 431, 603, 609, 647
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 1 cut(s) 710
OliI CACNNNNGTG 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 3 cut(s) 271, 470, 680
PkrI GCNGC 4 cut(s) 155, 231, 234, 796
PshBI ATTAAT 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 365
PsuI RGATCY 3 cut(s) 136, 363, 594
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
RseI CAYNNNNRTG 2 cut(s) 146, 604
SaqAI TTAA 6 cut(s) 132, 309, 329, 510, 618, 814
SatI GCNGC 4 cut(s) 154, 230, 233, 795
Sau3AI GATC 5 cut(s) 136, 363, 400, 489, 594
ScaI AGTACT 1 cut(s) 548
ScrFI CCNGG 1 cut(s) 281
SfaNI GCATC 3 cut(s) 158, 465, 738
SmiMI CAYNNNNRTG 2 cut(s) 146, 604
SmlI CTYRAG 3 cut(s) 39, 45, 404
SmoI CTYRAG 3 cut(s) 39, 45, 404
SpeI ACTAGT 1 cut(s) 560
Sse9I AATT 6 cut(s) 202, 236, 250, 330, 443, 611
SspMI CTAG 2 cut(s) 561, 791
StyD4I CCNGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 505
TasI AATT 6 cut(s) 202, 236, 250, 330, 443, 611
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 3 cut(s) 271, 470, 680
Tru1I TTAA 6 cut(s) 132, 309, 329, 510, 618, 814
Tru9I TTAA 6 cut(s) 132, 309, 329, 510, 618, 814
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 4 cut(s) 153, 229, 232, 794
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 4 cut(s) 108, 170, 604, 632
TspRI CASTG 1 cut(s) 381
VspI ATTAAT 1 cut(s) 329
XapI RAATTY 2 cut(s) 202, 611
XmiI GTMKAC 2 cut(s) 72, 698
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 2 cut(s) 561, 791
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.