Rmu_sc0007659.1_g000002

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007659.1
OG0000155
Physical Location & Seq
Reverse (-)
5900 .. 6721
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007659.1_g000002.1.cds

Sequence Viewer

Length: 822 bp
atgaatcgtcgtggggatgataagatacacacctttcgttttcgtagcttctgcagagattgggactctagaatcatcaattggattgataatgcaataaggtgtaatgttgaagtgcttgatcttgagctttgtatgatttctttgactcggctgtttgagtctatcttgctttgtgggtctctgaagtctttatcagtgggaatggagtttaagtatagattcctaacattaccctcctcggcttgtttttctaatattgaatgtttgaagttgaaaaacattgaggtagtggatgagggatttctcagatgggtctcatcttcgtgcaagtgcacgaaggagttacatcttgaagatattgaggggatagaacatctcactattgaaagttcacctttgcaatcgttcagttttgtgcatcgccggcagttggaccccatctatcttagcatttctgctgacaatctggaagatctagttattgattggggattttatggtcgcacaaagtcgttaaatatatttgcttccatagttagatatatgaaatggacatggatattgtcgactcgccaaaattttggagaatttaagcttctggaacaagctgagctttttctgagacttagggggaatgactttctatctgagtttcttagagcaagttcactcgtagtaaaaaaaaaggcaaagtcgagaagtcaagaattcgaccagtcaagttactattcattgtcactggacatgggtttacacccgttgtttttcttgcccggtcaaactattcacttttactgttcacactcactgttcacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

273

Amino Acids

31.95

Weight (kDa)

7.03

Isoelectric Point (pI)

60.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 569
AcsI RAATTY 3 cut(s) 580, 590, 710
AcuI CTGAAG 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 6 cut(s) 113, 263, 271, 277, 356, 389
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AluBI AGCT 5 cut(s) 48, 130, 598, 611, 616
AluI AGCT 5 cut(s) 48, 130, 598, 611, 616
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 3 cut(s) 186, 322, 619
Alw44I GTGCAC 1 cut(s) 334
ApaLI GTGCAC 1 cut(s) 334
ApoI RAATTY 3 cut(s) 580, 590, 710
AspS9I GGNCC 1 cut(s) 436
AsuC2I CCSGG 1 cut(s) 777
AsuHPI GGTGA 1 cut(s) 387
AvaII GGWCC 1 cut(s) 436
BaeGI GKGCMC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 338
BccI CCATC 2 cut(s) 306, 449
BcnI CCSGG 1 cut(s) 777
BcoDI GTCTC 3 cut(s) 186, 322, 619
BfaI CTAG 2 cut(s) 69, 479
BfmI CTRYAG 1 cut(s) 52
BglII AGATCT 1 cut(s) 475
BlpI GCTNAGC 1 cut(s) 612
Bme1390I CCNGG 1 cut(s) 777
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 777
BmsI GCATC 1 cut(s) 430
Bpu1102I GCTNAGC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 777
BsaAI YACGTR 1 cut(s) 819
BsaI GGTCTC 2 cut(s) 186, 322
BsaJI CCNNGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse118I RCCGGY 1 cut(s) 426
Bse1I ACTGG 2 cut(s) 718, 747
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 22, 301
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 4 cut(s) 322, 603, 614, 642
BseNI ACTGG 2 cut(s) 718, 747
BseRI GAGGAG 1 cut(s) 229
BseSI GKGCMC 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 338
BsiSI CCGG 2 cut(s) 427, 777
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 3 cut(s) 186, 322, 619
BsmFI GGGAC 1 cut(s) 77
Bso31I GGTCTC 2 cut(s) 186, 322
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 2 cut(s) 121, 475
Bsp1720I GCTNAGC 1 cut(s) 612
BspCNI CTCAG 4 cut(s) 321, 604, 615, 643
BspLI GGNNCC 1 cut(s) 438
BspMAI CTGCAG 1 cut(s) 56
BspTNI GGTCTC 2 cut(s) 186, 322
BsrFI RCCGGY 1 cut(s) 426
BsrI ACTGG 2 cut(s) 718, 747
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 121, 475
Bst4CI ACNGT 2 cut(s) 800, 813
BstBAI YACGTR 1 cut(s) 819
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 7 cut(s) 308, 449, 612, 623, 629, 651, 659
BstF5I GGATG 2 cut(s) 22, 301
BstKTI GATC 2 cut(s) 124, 478
BstMAI GTCTC 3 cut(s) 186, 322, 619
BstMBI GATC 2 cut(s) 121, 475
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 775
BstSFI CTRYAG 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 475
BstXI CCANNNNNNTGG 1 cut(s) 584
BstYI RGATCY 1 cut(s) 475
BtgZI GCGATG 1 cut(s) 407
BtsCI GGATG 2 cut(s) 22, 301
BtsIMutI CAGTG 3 cut(s) 204, 740, 809
Cac8I GCNNGC 1 cut(s) 428
Cfr10I RCCGGY 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 436
CviAII CATG 2 cut(s) 558, 748
CviJI RGCY 7 cut(s) 48, 130, 154, 245, 598, 611, 616
CviKI_1 RGCY 7 cut(s) 48, 130, 154, 245, 598, 611, 616
DdeI CTNAG 7 cut(s) 308, 449, 612, 623, 629, 651, 659
DpnI GATC 2 cut(s) 123, 477
DpnII GATC 2 cut(s) 121, 475
Eco31I GGTCTC 2 cut(s) 186, 322
Eco47I GGWCC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 710
FaeI CATG 2 cut(s) 561, 751
FaiI YATR 9 cut(s) 137, 219, 501, 524, 536, 546, 548, 559, 749
FalI AAGNNNNNCTT 4 cut(s) 382, 414, 600, 632
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 557, 747
FblI GTMKAC 1 cut(s) 569
FokI GGATG 2 cut(s) 29, 308
FspBI CTAG 2 cut(s) 69, 479
HapII CCGG 2 cut(s) 427, 777
Hin1II CATG 2 cut(s) 561, 751
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 7 cut(s) 4, 65, 72, 148, 161, 222, 571
HpaII CCGG 2 cut(s) 427, 777
HphI GGTGA 1 cut(s) 387
Hpy166II GTNNAC 7 cut(s) 336, 395, 570, 671, 755, 803, 816
Hpy188I TCNGA 4 cut(s) 186, 311, 624, 652
Hpy188III TCNNGA 7 cut(s) 69, 125, 353, 470, 602, 699, 707
Hpy8I GTNNAC 7 cut(s) 336, 395, 570, 671, 755, 803, 816
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 2 cut(s) 800, 813
HpyCH4IV ACGT 1 cut(s) 818
HpyCH4V TGCA 6 cut(s) 54, 95, 330, 336, 403, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 7 cut(s) 308, 449, 612, 623, 629, 651, 659
HpySE526I ACGT 1 cut(s) 818
Hsp92II CATG 2 cut(s) 561, 751
KroI GCCGGC 1 cut(s) 426
KroNI GCCGGC 1 cut(s) 428
Kzo9I GATC 2 cut(s) 121, 475
LpnPI CCDG 6 cut(s) 440, 455, 587, 728, 731, 790
LweI GCATC 1 cut(s) 430
MaeI CTAG 2 cut(s) 69, 479
MaeII ACGT 1 cut(s) 818
MaeIII GTNAC 3 cut(s) 345, 725, 738
MalI GATC 2 cut(s) 123, 477
MboI GATC 2 cut(s) 121, 475
MboII GAAGA 3 cut(s) 315, 368, 485
MfeI CAATTG 1 cut(s) 79
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 4 cut(s) 79, 580, 590, 710
MlyI GAGTC 4 cut(s) 59, 142, 170, 565
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 5 cut(s) 247, 250, 280, 292, 358
MroNI GCCGGC 1 cut(s) 426
MseI TTAA 3 cut(s) 213, 518, 594
MslI CAYNNNNRTG 1 cut(s) 325
MspI CCGG 2 cut(s) 427, 777
MspR9I CCNGG 1 cut(s) 777
MunI CAATTG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 427
NaeI GCCGGC 1 cut(s) 428
NciI CCSGG 1 cut(s) 777
NdeII GATC 2 cut(s) 121, 475
NgoMIV GCCGGC 1 cut(s) 426
NlaIII CATG 2 cut(s) 561, 751
NlaIV GGNNCC 1 cut(s) 438
NmeAIII GCCGAG 2 cut(s) 130, 221
NmuCI GTSAC 1 cut(s) 738
PdiI GCCGGC 1 cut(s) 428
PfeI GAWTC 3 cut(s) 4, 72, 222
PleI GAGTC 4 cut(s) 59, 142, 169, 565
PpsI GAGTC 4 cut(s) 59, 142, 169, 565
Ppu21I YACGTR 1 cut(s) 819
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 436
PstI CTGCAG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 325
SalI GTCGAC 1 cut(s) 568
SaqAI TTAA 3 cut(s) 213, 518, 594
Sau3AI GATC 2 cut(s) 121, 475
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 4 cut(s) 59, 142, 170, 565
ScrFI CCNGG 1 cut(s) 777
SduI GDGCHC 1 cut(s) 338
SfaNI GCATC 1 cut(s) 430
SfcI CTRYAG 1 cut(s) 52
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 4 cut(s) 79, 580, 590, 710
SspI AATATT 1 cut(s) 259
SspMI CTAG 2 cut(s) 69, 479
StyD4I CCNGG 1 cut(s) 775
TaaI ACNGT 2 cut(s) 800, 813
TaiI ACGT 1 cut(s) 821
TaqI TCGA 3 cut(s) 569, 698, 714
TasI AATT 4 cut(s) 79, 580, 590, 710
TfiI GAWTC 3 cut(s) 4, 72, 222
Tru1I TTAA 3 cut(s) 213, 518, 594
Tru9I TTAA 3 cut(s) 213, 518, 594
TscAI CASTG 3 cut(s) 204, 747, 816
TseFI GTSAC 1 cut(s) 738
Tsp45I GTSAC 1 cut(s) 738
TspDTI ATGAA 3 cut(s) 17, 563, 723
TspRI CASTG 3 cut(s) 204, 747, 816
VneI GTGCAC 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 436
XapI RAATTY 3 cut(s) 580, 590, 710
XbaI TCTAGA 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 569
XspI CTAG 2 cut(s) 69, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.