Rroxscaffold_6G00407590

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000155
Physical Location & Seq
Reverse (-)
30232301 .. 30234159
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407590.1

Sequence Viewer

Length: 1026 bp
ATGAAAAAGAAATTTAGAACCCTGGAGAGGTTCAGTGATCTTCCTGACCAAGTTGCTCATCACATTCTTTCCTTTCTCACCATAAGAGACTTAACTCGGTTCGGTTCCACGTCCAAAAAATGCAGAGAGCTTTACCTGTCAGCCCCATCATTGAACTTTAAGGTAGATACCTCCTTACGAAGCTTCATGACCAAGCGAGCTAAGTTGCTCAACTCTGTGGAAAGGTACTTGCTTCAACGCGGTAATAATCCAATACTCTGCTTTCGCGTTTCTTGGGATTTCCATGAAAGTGTAAGGGCAAGGTTGTGTGATGAGCAGTTTCGATTCGCCTCGTGGATCCAGAATGCTGTAAGAATTTATTCTAGTGGGACATCGGTGAATATTTCTGCTCCAAATCTCAGACACTTTAGGTGGAGGGGAAATTTGATGAATCATGCAAATGTTGGAAATTTAATGCTTTTAGAAAAAGTTGAGCTTTTTCAAGTTTTTCTATCTCCTAAAGTAGATGACTTTGACAGCCTATTGGAGGTTCTTTCTGGTATCCGCAGGACTAAAGTTTTTAATCTAGATGGGATGACTATGAAGGCTGTGTTCAAGGAAGGTTCCATGCCATTACCATTAGATGAGATTAGTAATTTGGGCATTCATATTTACAGCTTGGATGATGACCTAGTCCCGGCAATGGTCTCTCTTCTCAGAGGAATGACTAATTTGAATACTCTCTGGATAACACCTGCCAATTTGCCAGCCTATATGCGCTACTCTAAGGTTGATGTATCTGGGTTTAATATGGGTTTTTGGAAATCCCAAAGGCTTGCTTTCGTTTCTCAACTTAAGGAGGTAAGAATAGAGCTTGCAAATGGGAGTAATGAGATCGAGTTAGCAAGGTATTTGCTGAAGCATGCTCATAATTTGAAGGAAATGGTCCTACTTTATCCGCCCCAGCAGTCCCATCTTTTAAAGAAGATTATCGGAGATAAGATTGTTTCTACTGCCACGCTTGTCTTGCAGGAAAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

341

Amino Acids

39.3

Weight (kDa)

9.79

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 44 4.9e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 742
Acc36I ACCTGC 1 cut(s) 742
AccII CGCG 2 cut(s) 240, 267
AciI CCGC 3 cut(s) 240, 544, 938
AclWI GGATC 2 cut(s) 331, 344
AcsI RAATTY 4 cut(s) 11, 354, 421, 448
AcuI CTGAAG 1 cut(s) 917
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 4 cut(s) 27, 526, 676, 682
AflII CTTAAG 1 cut(s) 833
AgsI TTSAA 6 cut(s) 154, 236, 482, 595, 715, 916
AjiI CACGTC 1 cut(s) 111
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 6 cut(s) 130, 183, 200, 475, 657, 853
AluI AGCT 6 cut(s) 130, 183, 200, 475, 657, 853
Alw26I GTCTC 2 cut(s) 81, 691
AlwI GGATC 2 cut(s) 331, 344
ApoI RAATTY 4 cut(s) 11, 354, 421, 448
Asp700I GAANNNNTTC 1 cut(s) 358
AspLEI GCGC 1 cut(s) 759
AspS9I GGNCC 1 cut(s) 925
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 2 cut(s) 70, 388
AvaII GGWCC 1 cut(s) 925
BamHI GGATCC 1 cut(s) 336
BauI CACGAG 1 cut(s) 331
BccI CCATC 3 cut(s) 154, 563, 960
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 1 cut(s) 551
BcnI CCSGG 1 cut(s) 677
BcoDI GTCTC 2 cut(s) 81, 691
BfaI CTAG 3 cut(s) 363, 566, 671
BfrI CTTAAG 1 cut(s) 833
BfuAI ACCTGC 1 cut(s) 742
BfuI GTATCC 1 cut(s) 551
Bme1390I CCNGG 2 cut(s) 23, 677
Bme18I GGWCC 1 cut(s) 925
BmgBI CACGTC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 3 cut(s) 106, 338, 604
BmrFI CCNGG 2 cut(s) 23, 677
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 677
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 526, 676, 682
Bse3DI GCAATG 1 cut(s) 687
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 579, 667
BseLI CCNNNNNNNGG 4 cut(s) 27, 526, 676, 682
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 2 cut(s) 412, 709
BseYI CCCAGC 1 cut(s) 942
Bsh1236I CGCG 2 cut(s) 240, 267
BsiSI CCGG 1 cut(s) 677
BslFI GGGAC 3 cut(s) 382, 659, 934
BslI CCNNNNNNNGG 4 cut(s) 27, 526, 676, 682
BsmAI GTCTC 2 cut(s) 81, 691
BsmFI GGGAC 3 cut(s) 382, 659, 934
BsmI GAATGC 2 cut(s) 349, 642
Bso31I GGTCTC 1 cut(s) 691
Bsp143I GATC 3 cut(s) 37, 336, 873
BspACI CCGC 3 cut(s) 240, 544, 938
BspCNI CTCAG 2 cut(s) 411, 708
BspFNI CGCG 2 cut(s) 240, 267
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 106, 338, 604
BspMI ACCTGC 1 cut(s) 742
BspPI GGATC 2 cut(s) 331, 344
BspTI CTTAAG 1 cut(s) 833
BspTNI GGTCTC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 687
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 3 cut(s) 37, 336, 873
BssSI CACGAG 1 cut(s) 331
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 696
BstAFI CTTAAG 1 cut(s) 833
BstC8I GCNNGC 5 cut(s) 198, 747, 816, 855, 903
BstDEI CTNAG 4 cut(s) 201, 398, 695, 765
BstENI CCTNNNNNAGG 1 cut(s) 524
BstF5I GGATG 2 cut(s) 579, 667
BstFNI CGCG 2 cut(s) 240, 267
BstHHI GCGC 1 cut(s) 759
BstKTI GATC 3 cut(s) 40, 339, 876
BstMAI GTCTC 2 cut(s) 81, 691
BstMBI GATC 3 cut(s) 37, 336, 873
BstMWI GCNNNNNNNGC 1 cut(s) 1006
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 905
BstSCI CCNGG 2 cut(s) 21, 675
BstUI CGCG 2 cut(s) 240, 267
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BsuI GTATCC 1 cut(s) 551
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 579, 667
BtsIMutI CAGTG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 742
Cac8I GCNNGC 5 cut(s) 198, 747, 816, 855, 903
CciI TCATGA 1 cut(s) 186
CfoI GCGC 1 cut(s) 759
Cfr13I GGNCC 1 cut(s) 925
Csp6I GTAC 1 cut(s) 226
CviAII CATG 5 cut(s) 187, 284, 434, 607, 902
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 4 cut(s) 201, 398, 695, 765
DpnI GATC 3 cut(s) 39, 338, 875
DpnII GATC 3 cut(s) 37, 336, 873
DraI TTTAAA 1 cut(s) 960
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
EciI GGCGGA 1 cut(s) 927
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 1 cut(s) 925
Eco57I CTGAAG 1 cut(s) 917
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 5 cut(s) 190, 287, 437, 610, 905
FalI AAGNNNNNCTT 4 cut(s) 459, 491, 802, 834
FaqI GGGAC 3 cut(s) 382, 659, 934
FatI CATG 5 cut(s) 186, 283, 433, 606, 901
FokI GGATG 2 cut(s) 586, 674
FspBI CTAG 3 cut(s) 363, 566, 671
GlaI GCGC 1 cut(s) 758
GsaI CCCAGC 1 cut(s) 946
GsuI CTGGAG 1 cut(s) 44
HapII CCGG 1 cut(s) 677
HhaI GCGC 1 cut(s) 759
Hin1II CATG 5 cut(s) 190, 287, 437, 610, 905
Hin6I GCGC 1 cut(s) 757
HinP1I GCGC 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 2 cut(s) 324, 430
HpaII CCGG 1 cut(s) 677
HphI GGTGA 2 cut(s) 70, 388
Hpy188I TCNGA 3 cut(s) 401, 698, 974
Hpy188III TCNNGA 5 cut(s) 44, 187, 340, 566, 724
HpyAV CCTTC 3 cut(s) 577, 593, 910
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 123, 437, 857, 1009
HpyF10VI GCNNNNNNNGC 1 cut(s) 1006
HpyF3I CTNAG 4 cut(s) 201, 398, 695, 765
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 5 cut(s) 190, 287, 437, 610, 905
HspAI GCGC 1 cut(s) 757
Kzo9I GATC 3 cut(s) 37, 336, 873
LmnI GCTCC 1 cut(s) 394
MaeI CTAG 3 cut(s) 363, 566, 671
MaeII ACGT 1 cut(s) 110
MalI GATC 3 cut(s) 39, 338, 875
MboI GATC 3 cut(s) 37, 336, 873
MboII GAAGA 3 cut(s) 32, 683, 976
MflI RGATCY 1 cut(s) 336
MluCI AATT 8 cut(s) 11, 354, 421, 448, 634, 709, 739, 910
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 7 cut(s) 21, 181, 340, 408, 520, 692, 832
MroXI GAANNNNTTC 1 cut(s) 358
MseI TTAA 7 cut(s) 92, 159, 452, 561, 786, 834, 959
MslI CAYNNNNRTG 2 cut(s) 288, 438
MspCI CTTAAG 1 cut(s) 833
MspI CCGG 1 cut(s) 677
MspR9I CCNGG 2 cut(s) 23, 677
Mva1269I GAATGC 2 cut(s) 349, 642
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 2 cut(s) 240, 267
MwoI GCNNNNNNNGC 1 cut(s) 1006
NciI CCSGG 1 cut(s) 677
NdeII GATC 3 cut(s) 37, 336, 873
NlaIII CATG 5 cut(s) 190, 287, 437, 610, 905
NlaIV GGNNCC 3 cut(s) 106, 338, 604
NspI RCATGY 1 cut(s) 905
PaeI GCATGC 1 cut(s) 905
PagI TCATGA 1 cut(s) 186
PaqCI CACCTGC 1 cut(s) 742
PctI GAATGC 2 cut(s) 349, 642
PdmI GAANNNNTTC 1 cut(s) 358
PfeI GAWTC 2 cut(s) 324, 430
PflFI GACNNNGTC 1 cut(s) 671
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 942
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 106, 338, 604
PspPI GGNCC 1 cut(s) 925
PsuI RGATCY 1 cut(s) 336
PsyI GACNNNGTC 1 cut(s) 671
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 2 cut(s) 288, 438
SaqAI TTAA 7 cut(s) 92, 159, 452, 561, 786, 834, 959
Sau3AI GATC 3 cut(s) 37, 336, 873
Sau96I GGNCC 1 cut(s) 925
ScrFI CCNGG 2 cut(s) 23, 677
SinI GGWCC 1 cut(s) 925
SmiMI CAYNNNNRTG 2 cut(s) 288, 438
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
SphI GCATGC 1 cut(s) 905
Sse9I AATT 8 cut(s) 11, 354, 421, 448, 634, 709, 739, 910
SsiI CCGC 3 cut(s) 240, 544, 938
SspI AATATT 1 cut(s) 382
SspMI CTAG 3 cut(s) 363, 566, 671
StyD4I CCNGG 2 cut(s) 21, 675
TaiI ACGT 1 cut(s) 113
TaqI TCGA 2 cut(s) 322, 876
TasI AATT 8 cut(s) 11, 354, 421, 448, 634, 709, 739, 910
TfiI GAWTC 2 cut(s) 324, 430
Tru1I TTAA 7 cut(s) 92, 159, 452, 561, 786, 834, 959
Tru9I TTAA 7 cut(s) 92, 159, 452, 561, 786, 834, 959
TscAI CASTG 1 cut(s) 40
TspDTI ATGAA 6 cut(s) 17, 175, 300, 443, 596, 635
TspRI CASTG 1 cut(s) 40
Tth111I GACNNNGTC 1 cut(s) 671
Vha464I CTTAAG 1 cut(s) 833
VpaK11BI GGWCC 1 cut(s) 925
XagI CCTNNNNNAGG 1 cut(s) 524
XapI RAATTY 4 cut(s) 11, 354, 421, 448
XbaI TCTAGA 1 cut(s) 565
XceI RCATGY 1 cut(s) 905
XmnI GAANNNNTTC 1 cut(s) 358
XspI CTAG 3 cut(s) 363, 566, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.