Rmu_sc0005137.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005137.1
OG0000155
Physical Location & Seq
Reverse (-)
2 .. 1450
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005137.1_g000001.1.cds

Sequence Viewer

Length: 1138 bp
atgaaaaagaaatttagaaccctggagaggttcagtgatcttcctgaccaagttgctcatcacattctttcctttctcaccataagagacttaactcggttcggttccacgtccaaaaaatgcagagagctttacctgtcagctccatcattgaactttaaggtagatgcctccttacgaagcttcatgaccaagcgagctaagttgctcaactctgtggaaagatacttgcttcaacgtggtaataatccaatactctgctttcgcgtttcgtgggatttctatgaaagtgtaagggccgggcaaggttgtgtgatggaaagatacttgcttcaacgtggtaataatccaatactctgctttcgcgtttcgtgggatttctatgaaagtgtaagggcaaggttgtgtggtgagcagtttcgattcgcctcgtggatccagaatgctgtaaggtgcaatgtccaagtgatcgaactagtttttgatcaaaatcacactgcagtccgtaagttcccattgccctcatgcatctggatttctacttctctgaggtccctattggtagtctcaagttatgtgattattcaagtgccctccttttctttctcatgtaatctttattccttaaagttgagaggcgtaataatagaagaccagaattttagcaaatggatctcatgttcgtgcaaatgtcttgaggaattatcgcttgaaaatgttcgtggcggagggttgaaaaatctcacttttgaaagctcctctttgcaatcgatcagtttgttggatagtggattctgccatctcaatgtcttatgtgagaaacttgaagatctatatgtaagttgcagaatttattctagtgggacatcgttgaatatttctgctccaaatctcaaacacttaaggtggaggcgaattttgatgaatcatgcaaatgttggaaatttaacgcgtttagaaaaagttgagctttttcaagtttttctatctcctgaagtagatgactttgacagcctattggaggttctttctggtatccgcagggctaaagtttttaatctagatgggatgactatgaaggctgtgttcaaggaaggttccatgccattaccattagatgagattagtaatttgggca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

379

Amino Acids

43.49

Weight (kDa)

9.1

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 267, 366, 952
AciI CCGC 2 cut(s) 726, 1039
AclWI GGATC 3 cut(s) 430, 443, 680
AcsI RAATTY 5 cut(s) 11, 658, 849, 915, 943
AcuI CTGAAG 1 cut(s) 1014
AfiI CCNNNNNNNGG 2 cut(s) 27, 1021
AflII CTTAAG 1 cut(s) 901
AflIII ACRYGT 1 cut(s) 950
AhlI ACTAGT 1 cut(s) 475
AjiI CACGTC 1 cut(s) 111
AjnI CCWGG 1 cut(s) 21
AloI GAACNNNNNNTCC 2 cut(s) 664, 696
AluBI AGCT 6 cut(s) 130, 143, 183, 200, 756, 970
AluI AGCT 6 cut(s) 130, 143, 183, 200, 756, 970
Alw26I GTCTC 2 cut(s) 81, 571
AlwI GGATC 3 cut(s) 430, 443, 680
AoxI GGCC 1 cut(s) 297
ApoI RAATTY 5 cut(s) 11, 658, 849, 915, 943
Asp700I GAANNNNTTC 2 cut(s) 717, 853
AspS9I GGNCC 2 cut(s) 297, 552
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 70, 422
AvaII GGWCC 1 cut(s) 552
BaeGI GKGCMC 1 cut(s) 594
BamHI GGATCC 1 cut(s) 435
BauI CACGAG 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 657
BccI CCATC 4 cut(s) 154, 310, 807, 1058
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 1 cut(s) 1046
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 81, 571
BcuI ACTAGT 1 cut(s) 475
BfaI CTAG 3 cut(s) 476, 858, 1061
BfmI CTRYAG 1 cut(s) 498
BfrI CTTAAG 1 cut(s) 901
BfuI GTATCC 1 cut(s) 1046
BglII AGATCT 1 cut(s) 829
Bme1390I CCNGG 2 cut(s) 23, 301
Bme18I GGWCC 1 cut(s) 552
BmgBI CACGTC 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 297, 552
BmiI GGNNCC 4 cut(s) 106, 437, 554, 1099
BmrFI CCNGG 2 cut(s) 23, 301
BmsI GCATC 2 cut(s) 157, 537
BpiI GAAGAC 1 cut(s) 657
BpmI CTGGAG 1 cut(s) 44
BpuEI CTTGAG 2 cut(s) 553, 716
BpuMI CCSGG 1 cut(s) 301
Bsa29I ATCGAT 1 cut(s) 770
BsaBI GATNNNNATC 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 1021
Bse3DI GCAATG 2 cut(s) 463, 515
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 770
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 1074
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 2 cut(s) 27, 1021
BseMI GCAATG 2 cut(s) 463, 515
BseMII CTCAG 1 cut(s) 539
BseRI GAGGAG 1 cut(s) 748
BseSI GKGCMC 1 cut(s) 594
Bsh1236I CGCG 3 cut(s) 267, 366, 952
BshFI GGCC 1 cut(s) 299
BshVI ATCGAT 1 cut(s) 770
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 2 cut(s) 538, 877
BslI CCNNNNNNNGG 2 cut(s) 27, 1021
BsmAI GTCTC 2 cut(s) 81, 571
BsmFI GGGAC 2 cut(s) 538, 877
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 594
Bsp143I GATC 7 cut(s) 37, 435, 468, 484, 672, 771, 829
BspACI CCGC 2 cut(s) 726, 1039
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 540
BspDI ATCGAT 1 cut(s) 770
BspFNI CGCG 3 cut(s) 267, 366, 952
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 4 cut(s) 106, 437, 554, 1099
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 3 cut(s) 430, 443, 680
BspTI CTTAAG 1 cut(s) 901
BsrDI GCAATG 2 cut(s) 463, 515
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 7 cut(s) 37, 435, 468, 484, 672, 771, 829
BssSI CACGAG 1 cut(s) 430
Bst2BI CACGAG 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 23
BstAFI CTTAAG 1 cut(s) 901
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 201, 548
BstENI CCTNNNNNAGG 1 cut(s) 1019
BstF5I GGATG 1 cut(s) 1074
BstFNI CGCG 3 cut(s) 267, 366, 952
BstKTI GATC 7 cut(s) 40, 438, 471, 487, 675, 774, 832
BstMAI GTCTC 2 cut(s) 81, 571
BstMBI GATC 7 cut(s) 37, 435, 468, 484, 672, 771, 829
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 21, 299
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 594
BstUI CGCG 3 cut(s) 267, 366, 952
BstV2I GAAGAC 1 cut(s) 657
BstX2I RGATCY 3 cut(s) 435, 672, 829
BstYI RGATCY 3 cut(s) 435, 672, 829
Bsu15I ATCGAT 1 cut(s) 770
BsuI GTATCC 1 cut(s) 1046
BsuRI GGCC 1 cut(s) 299
BsuTUI ATCGAT 1 cut(s) 770
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 1074
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 2 cut(s) 40, 495
Cac8I GCNNGC 1 cut(s) 198
CciI TCATGA 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 297, 552
ClaI ATCGAT 1 cut(s) 770
CviAII CATG 6 cut(s) 187, 525, 609, 678, 929, 1102
DdeI CTNAG 2 cut(s) 201, 548
DpnI GATC 7 cut(s) 39, 437, 470, 486, 674, 773, 831
DpnII GATC 7 cut(s) 37, 435, 468, 484, 672, 771, 829
EciI GGCGGA 1 cut(s) 741
Eco47I GGWCC 1 cut(s) 552
Eco57I CTGAAG 1 cut(s) 1014
EcoNI CCTNNNNNAGG 1 cut(s) 1019
EcoO109I RGGNCCY 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 530
FaeI CATG 6 cut(s) 190, 528, 612, 681, 932, 1105
FalI AAGNNNNNCTT 4 cut(s) 745, 777, 954, 986
FaqI GGGAC 2 cut(s) 538, 877
FatI CATG 6 cut(s) 186, 524, 608, 677, 928, 1101
FbaI TGATCA 1 cut(s) 484
FokI GGATG 1 cut(s) 1081
FspBI CTAG 3 cut(s) 476, 858, 1061
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 300
Hin1II CATG 6 cut(s) 190, 528, 612, 681, 932, 1105
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 3 cut(s) 423, 792, 925
HpaII CCGG 1 cut(s) 300
HphI GGTGA 2 cut(s) 70, 422
Hpy188I TCNGA 1 cut(s) 549
Hpy188III TCNNGA 7 cut(s) 44, 187, 439, 532, 695, 992, 1061
HpyAV CCTTC 2 cut(s) 1072, 1088
HpyCH4IV ACGT 3 cut(s) 110, 238, 337
HpyCH4V TGCA 8 cut(s) 123, 456, 500, 528, 687, 766, 846, 932
HpyF3I CTNAG 2 cut(s) 201, 548
HpySE526I ACGT 3 cut(s) 110, 238, 337
Hsp92II CATG 6 cut(s) 190, 528, 612, 681, 932, 1105
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 7 cut(s) 37, 435, 468, 484, 672, 771, 829
LmnI GCTCC 3 cut(s) 148, 761, 889
LweI GCATC 2 cut(s) 157, 537
MaeI CTAG 3 cut(s) 476, 858, 1061
MaeII ACGT 3 cut(s) 110, 238, 337
MalI GATC 7 cut(s) 39, 437, 470, 486, 674, 773, 831
MboI GATC 7 cut(s) 37, 435, 468, 484, 672, 771, 829
MboII GAAGA 3 cut(s) 32, 662, 839
MflI RGATCY 3 cut(s) 435, 672, 829
MhlI GDGCHC 1 cut(s) 594
MluCI AATT 7 cut(s) 11, 658, 701, 849, 915, 943, 1129
MluI ACGCGT 1 cut(s) 950
MmeI TCCRAC 2 cut(s) 762, 919
Mph1103I ATGCAT 1 cut(s) 530
MroXI GAANNNNTTC 2 cut(s) 717, 853
MseI TTAA 6 cut(s) 92, 159, 626, 902, 947, 1056
MslI CAYNNNNRTG 3 cut(s) 682, 804, 933
MspCI CTTAAG 1 cut(s) 901
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 23, 301
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 3 cut(s) 267, 366, 952
NciI CCSGG 1 cut(s) 301
NdeII GATC 7 cut(s) 37, 435, 468, 484, 672, 771, 829
NlaIII CATG 6 cut(s) 190, 528, 612, 681, 932, 1105
NlaIV GGNNCC 4 cut(s) 106, 437, 554, 1099
NsiI ATGCAT 1 cut(s) 530
PagI TCATGA 1 cut(s) 186
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 2 cut(s) 717, 853
PfeI GAWTC 3 cut(s) 423, 792, 925
PpuMI RGGWCCY 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 4 cut(s) 106, 437, 554, 1099
PspPI GGNCC 2 cut(s) 297, 552
PspPPI RGGWCCY 1 cut(s) 552
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 3 cut(s) 435, 672, 829
RseI CAYNNNNRTG 3 cut(s) 682, 804, 933
SaqAI TTAA 6 cut(s) 92, 159, 626, 902, 947, 1056
Sau3AI GATC 7 cut(s) 37, 435, 468, 484, 672, 771, 829
Sau96I GGNCC 2 cut(s) 297, 552
ScrFI CCNGG 2 cut(s) 23, 301
SduI GDGCHC 1 cut(s) 594
SfaNI GCATC 2 cut(s) 157, 537
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 552
SmiMI CAYNNNNRTG 3 cut(s) 682, 804, 933
SmlI CTYRAG 3 cut(s) 568, 695, 901
SmoI CTYRAG 3 cut(s) 568, 695, 901
SpeI ACTAGT 1 cut(s) 475
Sse9I AATT 7 cut(s) 11, 658, 701, 849, 915, 943, 1129
SsiI CCGC 2 cut(s) 726, 1039
SspI AATATT 1 cut(s) 877
SspMI CTAG 3 cut(s) 476, 858, 1061
StyD4I CCNGG 2 cut(s) 21, 299
TaiI ACGT 3 cut(s) 113, 241, 340
TaqI TCGA 3 cut(s) 421, 471, 770
TasI AATT 7 cut(s) 11, 658, 701, 849, 915, 943, 1129
TfiI GAWTC 3 cut(s) 423, 792, 925
Tru1I TTAA 6 cut(s) 92, 159, 626, 902, 947, 1056
Tru9I TTAA 6 cut(s) 92, 159, 626, 902, 947, 1056
TscAI CASTG 2 cut(s) 40, 502
TspDTI ATGAA 6 cut(s) 17, 175, 300, 399, 938, 1091
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 2 cut(s) 40, 502
Vha464I CTTAAG 1 cut(s) 901
VpaK11BI GGWCC 1 cut(s) 552
XagI CCTNNNNNAGG 1 cut(s) 1019
XapI RAATTY 5 cut(s) 11, 658, 849, 915, 943
XbaI TCTAGA 1 cut(s) 1060
XmnI GAANNNNTTC 2 cut(s) 717, 853
XspI CTAG 3 cut(s) 476, 858, 1061
Zsp2I ATGCAT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.