Rroxscaffold_3G00251850

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000155
Physical Location & Seq
Reverse (-)
45856009 .. 45859106
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251850.1

Sequence Viewer

Length: 939 bp
ATGGAAGATGGCTTTGGAAAATGGATCTCCCACTCATGCAAATGCATTAAGGAATTATTGTTATTTGATGTTCGTGTGCTAAGTTTCACCGTGGAAAGCTCGTCTTTGGAATCATTTAGCTTTGTCTCTATGTATAACAATGACCTCTGCCATATTGGCATCTCAGGTGAGAAGCTTACAAAGATAAGAATAGAGTGGGAATTCTATAAAACTAGCAGCGGCACTACCAGATCATTAAATGTTTCTGCTCCAAATCTTAAATATTTGAAGTGGATTGGGAATTTGTTGAATTACCAAAATCTGGGGAAATTTATGTGTTTAGAGAAAGCTCACATTTTTCTGAAGCACAAGGGAGATGACTATGACTTTGACAATGCATTTGAGGTTCTTTGCAGTTTGTGCAGGGTTAAAGTTCTTATTCTGAGTGAAGAGACCACTAAGGTTTTGCTCAGGGAAGGTCTAGTGCATGCACCATTGGATGATATTACTTACTTGAGTATCCATATTATGAGCTTGACTGATGACCTAGTCCCTGCAATGGTTTCTCTTCTGAGAGGAATGCCTAATTTGAGTACTTTGTACATAAAATCTTACCCTTCCTTGCACATTGGTAAACCGAAAGCATGTGGATTTAAGAGTAAATACTGGAAATCCCATAAGCTGGATTGTGTTCATCAGCTTCAGGATGTATCTATAGCGCTTTCCACTGGTTATATTAACAATGCCTTGGATTTAGTAAGATATATTCTCGAGAATGCCTCGAATTTGAAACAAATGGTCATATTTTATTTACCCCGCCAATCCTATGTTATAGGGAGGGTAAACAAATTCAAGAAGGATTCTTCTGCCATTGTTGTGTTTAAGGAAAGAGAATTGAATGATGATGGTGTAATGGGTAAGAGTTACCATCGGGTTTTAAATAGGTTGCATTGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

312

Amino Acids

35.8

Weight (kDa)

8.85

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 301, 661
AciI CCGC 2 cut(s) 219, 796
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 5 cut(s) 200, 280, 308, 763, 827
AcuI CTGAAG 2 cut(s) 362, 665
AfaI GTAC 2 cut(s) 574, 581
AfeI AGCGCT 1 cut(s) 699
AfiI CCNNNNNNNGG 3 cut(s) 301, 538, 661
AgsI TTSAA 5 cut(s) 268, 289, 769, 832, 877
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AluBI AGCT 7 cut(s) 99, 120, 175, 329, 513, 661, 679
AluI AGCT 7 cut(s) 99, 120, 175, 329, 513, 661, 679
Alw26I GTCTC 2 cut(s) 130, 425
AlwI GGATC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 749
Aor51HI AGCGCT 1 cut(s) 699
ApeKI GCWGC 1 cut(s) 216
ApoI RAATTY 5 cut(s) 200, 280, 308, 763, 827
ArsI GACNNNNNNTTYG 4 cut(s) 350, 362, 382, 394
AspLEI GCGC 1 cut(s) 700
AsuHPI GGTGA 2 cut(s) 79, 179
AvaI CYCGRG 1 cut(s) 749
BaeI ACNNNNGTAYC 2 cut(s) 481, 514
BbvI GCAGC 1 cut(s) 228
BccI CCATC 3 cut(s) 2, 878, 915
BciVI GTATCC 1 cut(s) 509
BcoDI GTCTC 2 cut(s) 130, 425
BfaI CTAG 3 cut(s) 213, 461, 527
BfmI CTRYAG 1 cut(s) 693
BfoI RGCGCY 1 cut(s) 701
BfuI GTATCC 1 cut(s) 509
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 2 cut(s) 217, 220
BlsI GCNGC 2 cut(s) 218, 221
BmcAI AGTACT 1 cut(s) 574
BmeT110I CYCGRG 1 cut(s) 749
BmsI GCATC 1 cut(s) 168
BplI GAGNNNNNCTC 2 cut(s) 743, 775
Bpu10I CCTNAGC 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 514
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 90, 726
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 538, 661
Bse1I ACTGG 2 cut(s) 650, 712
Bse3DI GCAATG 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 90, 726
BseGI GGATG 2 cut(s) 484, 691
BseLI CCNNNNNNNGG 3 cut(s) 301, 538, 661
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 4 cut(s) 177, 413, 463, 542
BseNI ACTGG 2 cut(s) 650, 712
BseXI GCAGC 1 cut(s) 228
BsgI GTGCAG 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 749
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 3 cut(s) 301, 538, 661
BsmAI GTCTC 2 cut(s) 130, 425
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 2 cut(s) 564, 760
Bso31I GGTCTC 1 cut(s) 425
BsoBI CYCGRG 1 cut(s) 749
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 2 cut(s) 24, 230
BspACI CCGC 2 cut(s) 219, 796
BspCNI CTCAG 4 cut(s) 176, 414, 462, 543
BspPI GGATC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 543
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 2 cut(s) 650, 712
BssECI CCNNGG 2 cut(s) 90, 726
BssMI GATC 2 cut(s) 24, 230
BssT1I CCWWGG 1 cut(s) 726
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 2 cut(s) 423, 552
BstAPI GCANNNNNTGC 1 cut(s) 399
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 6 cut(s) 80, 163, 422, 438, 449, 551
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 484, 691
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 1 cut(s) 700
BstKTI GATC 2 cut(s) 27, 233
BstMAI GTCTC 2 cut(s) 130, 425
BstMBI GATC 2 cut(s) 24, 230
BstMWI GCNNNNNNNGC 2 cut(s) 156, 399
BstNSI RCATGY 2 cut(s) 470, 627
BstSFI CTRYAG 1 cut(s) 693
BstV1I GCAGC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
BsuI GTATCC 1 cut(s) 509
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 484, 691
BtsIMutI CAGTG 1 cut(s) 705
Cac8I GCNNGC 1 cut(s) 468
CfoI GCGC 1 cut(s) 700
Csp6I GTAC 2 cut(s) 573, 580
CviAII CATG 3 cut(s) 36, 467, 624
CviJI RGCY 8 cut(s) 12, 99, 120, 175, 329, 513, 661, 679
CviKI_1 RGCY 8 cut(s) 12, 99, 120, 175, 329, 513, 661, 679
CviQI GTAC 2 cut(s) 573, 580
DdeI CTNAG 6 cut(s) 80, 163, 422, 438, 449, 551
DpnI GATC 2 cut(s) 26, 232
DpnII GATC 2 cut(s) 24, 230
DraI TTTAAA 1 cut(s) 918
Eam1104I CTCTTC 2 cut(s) 423, 552
EarI CTCTTC 2 cut(s) 423, 552
Eco130I CCWWGG 1 cut(s) 726
Eco31I GGTCTC 1 cut(s) 425
Eco47III AGCGCT 1 cut(s) 699
Eco57I CTGAAG 2 cut(s) 362, 665
Eco88I CYCGRG 1 cut(s) 749
EcoRI GAATTC 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 726
EcoT22I ATGCAT 2 cut(s) 47, 379
ErhI CCWWGG 1 cut(s) 726
FaeI CATG 3 cut(s) 39, 470, 627
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FaqI GGGAC 1 cut(s) 515
FatI CATG 3 cut(s) 35, 466, 623
FauI CCCGC 1 cut(s) 803
Fnu4HI GCNGC 2 cut(s) 217, 220
FokI GGATG 2 cut(s) 491, 698
Fsp4HI GCNGC 2 cut(s) 217, 220
FspBI CTAG 3 cut(s) 213, 461, 527
GlaI GCGC 1 cut(s) 699
GluI GCNGC 2 cut(s) 217, 220
HaeII RGCGCY 1 cut(s) 701
HhaI GCGC 1 cut(s) 700
Hin1II CATG 3 cut(s) 39, 470, 627
Hin6I GCGC 1 cut(s) 698
HinP1I GCGC 1 cut(s) 698
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 110, 839
HphI GGTGA 2 cut(s) 79, 179
Hpy166II GTNNAC 2 cut(s) 614, 823
Hpy188I TCNGA 3 cut(s) 342, 423, 552
Hpy188III TCNNGA 4 cut(s) 683, 749, 751, 832
Hpy8I GTNNAC 2 cut(s) 614, 823
HpyAV CCTTC 3 cut(s) 449, 606, 829
HpyCH4III ACNGT 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 399
HpyF3I CTNAG 6 cut(s) 80, 163, 422, 438, 449, 551
Hsp92II CATG 3 cut(s) 39, 470, 627
HspAI GCGC 1 cut(s) 698
Kzo9I GATC 2 cut(s) 24, 230
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 168
MaeI CTAG 3 cut(s) 213, 461, 527
MaeIII GTNAC 1 cut(s) 902
MalI GATC 2 cut(s) 26, 232
MboI GATC 2 cut(s) 24, 230
MboII GAAGA 4 cut(s) 17, 440, 539, 834
MflI RGATCY 1 cut(s) 24
MluCI AATT 9 cut(s) 53, 200, 280, 289, 308, 565, 763, 827, 872
MnlI CCTC 5 cut(s) 155, 376, 548, 769, 810
Mph1103I ATGCAT 2 cut(s) 47, 379
MseI TTAA 8 cut(s) 48, 236, 258, 408, 633, 717, 861, 917
MslI CAYNNNNRTG 2 cut(s) 40, 854
MspA1I CMGCKG 1 cut(s) 219
Mva1269I GAATGC 2 cut(s) 564, 760
MwoI GCNNNNNNNGC 2 cut(s) 156, 399
NdeII GATC 2 cut(s) 24, 230
NlaIII CATG 3 cut(s) 39, 470, 627
NsiI ATGCAT 2 cut(s) 47, 379
NspI RCATGY 2 cut(s) 470, 627
PaeI GCATGC 1 cut(s) 470
PaeR7I CTCGAG 1 cut(s) 749
PctI GAATGC 2 cut(s) 564, 760
PfeI GAWTC 2 cut(s) 110, 839
PflFI GACNNNGTC 1 cut(s) 527
PflMI CCANNNNNTGG 2 cut(s) 301, 661
PkrI GCNGC 2 cut(s) 218, 221
PsuI RGATCY 1 cut(s) 24
PsyI GACNNNGTC 1 cut(s) 527
RsaI GTAC 2 cut(s) 574, 581
RsaNI GTAC 2 cut(s) 573, 580
RseI CAYNNNNRTG 2 cut(s) 40, 854
SaqAI TTAA 8 cut(s) 48, 236, 258, 408, 633, 717, 861, 917
SatI GCNGC 2 cut(s) 217, 220
Sau3AI GATC 2 cut(s) 24, 230
ScaI AGTACT 1 cut(s) 574
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 693
Sfr274I CTCGAG 1 cut(s) 749
SlaI CTCGAG 1 cut(s) 749
SmiMI CAYNNNNRTG 2 cut(s) 40, 854
SmlI CTYRAG 2 cut(s) 493, 749
SmoI CTYRAG 2 cut(s) 493, 749
SphI GCATGC 1 cut(s) 470
Sse9I AATT 9 cut(s) 53, 200, 280, 289, 308, 565, 763, 827, 872
SsiI CCGC 2 cut(s) 219, 796
SspI AATATT 1 cut(s) 263
SspMI CTAG 3 cut(s) 213, 461, 527
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 750, 761
TasI AATT 9 cut(s) 53, 200, 280, 289, 308, 565, 763, 827, 872
TatI WGTACW 2 cut(s) 572, 579
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 2 cut(s) 110, 839
Tru1I TTAA 8 cut(s) 48, 236, 258, 408, 633, 717, 861, 917
Tru9I TTAA 8 cut(s) 48, 236, 258, 408, 633, 717, 861, 917
TscAI CASTG 1 cut(s) 712
TseI GCWGC 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 662
TspRI CASTG 1 cut(s) 712
Tth111I GACNNNGTC 1 cut(s) 527
Van91I CCANNNNNTGG 2 cut(s) 301, 661
XapI RAATTY 5 cut(s) 200, 280, 308, 763, 827
XceI RCATGY 2 cut(s) 470, 627
XhoI CTCGAG 1 cut(s) 749
XspI CTAG 3 cut(s) 213, 461, 527
ZrmI AGTACT 1 cut(s) 574
Zsp2I ATGCAT 2 cut(s) 47, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.