Rmu_sc0003170.1_g000026

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003170.1
OG0000155
Physical Location & Seq
Forward (+)
84037 .. 85931
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003170.1_g000026.1.cds

Sequence Viewer

Length: 921 bp
atgaaaaagaaatttagaaccctggagaggttcagtgatcttcctgaccaagttgctcatcacattctttcctttctcaccataagagacttaactcggttcggttccacgtccaaaaaatgcagagagctttacctgtcagctccatcattgaactttaaggtagatggctccttacgaagcttcacgaccaagcgagctaagttgctcaactctgtggaaatatacttgcttcaacgtggtaataatccaatactctgctttcgcgtttcttgggatttccatgaaagtgtaagggcaaggttgtgtgatgagcagtttcgattcgccttatggatccagaatgctgtaaggtgcaatgtccaagtgatcgaactagtttttgatcaaaatcacactgcagtccatgactttgacagcctattggaggttctttctggtatccgcagggccaaagtttttaatctagatgggatgactatgaaggctgtgttcaaggaaggttccatgccattaccattagatgagattagtaatttgggcattcatatttacagcttggatgatgacctagtcccggcaatggtctctcttctcagaggaataactaatttgaatactctctggataacatctgccaatttgctagcctatatgcgctactctaaggtatctgggtttaatatgggtttttggaaatcccaaaggcttgctttcgtttctcaacttaaggaggtaagaatagagcttgcaaatgggagtaatgagatcgagttagcaaggtatttgctgaagcatgctcataatttgaaggaaatggtcctactttatccgccccagcagtcccatcttttaaagaagattattagagagaagattgtttctactgccaggcttgtcttgcaggaaaagaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

306

Amino Acids

35.37

Weight (kDa)

9.69

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 2 cut(s) 445, 833
AclWI GGATC 2 cut(s) 331, 344
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 812
AfiI CCNNNNNNNGG 4 cut(s) 27, 427, 577, 583
AflII CTTAAG 1 cut(s) 728
AgsI TTSAA 5 cut(s) 154, 236, 496, 616, 811
AhlI ACTAGT 1 cut(s) 376
AjiI CACGTC 1 cut(s) 111
AjnI CCWGG 2 cut(s) 21, 890
AluBI AGCT 6 cut(s) 130, 143, 183, 200, 558, 748
AluI AGCT 6 cut(s) 130, 143, 183, 200, 558, 748
Alw26I GTCTC 2 cut(s) 81, 592
AlwI GGATC 2 cut(s) 331, 344
AoxI GGCC 1 cut(s) 450
ApoI RAATTY 1 cut(s) 11
AspLEI GCGC 1 cut(s) 660
AspS9I GGNCC 2 cut(s) 450, 820
AsuC2I CCSGG 1 cut(s) 578
AsuHPI GGTGA 1 cut(s) 70
AsuNHI GCTAGC 1 cut(s) 646
AvaII GGWCC 1 cut(s) 820
BamHI GGATCC 1 cut(s) 336
BccI CCATC 4 cut(s) 154, 161, 464, 855
BciT130I CCWGG 2 cut(s) 23, 892
BciVI GTATCC 1 cut(s) 452
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 578
BcoDI GTCTC 2 cut(s) 81, 592
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 4 cut(s) 377, 467, 572, 647
BfmI CTRYAG 1 cut(s) 399
BfrI CTTAAG 1 cut(s) 728
BfuI GTATCC 1 cut(s) 452
Bme1390I CCNGG 3 cut(s) 23, 578, 892
Bme18I GGWCC 1 cut(s) 820
BmgBI CACGTC 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 450, 820
BmiI GGNNCC 4 cut(s) 106, 172, 338, 505
BmrFI CCNGG 3 cut(s) 23, 578, 892
BmtI GCTAGC 1 cut(s) 650
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 578
BsaBI GATNNNNATC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 427, 577, 583
Bse3DI GCAATG 2 cut(s) 364, 588
Bse8I GATNNNNATC 1 cut(s) 390
BseBI CCWGG 2 cut(s) 23, 892
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 480, 568
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 4 cut(s) 27, 427, 577, 583
BseMI GCAATG 2 cut(s) 364, 588
BseMII CTCAG 1 cut(s) 610
BseYI CCCAGC 1 cut(s) 837
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 452
BsiSI CCGG 1 cut(s) 578
BslFI GGGAC 2 cut(s) 560, 829
BslI CCNNNNNNNGG 4 cut(s) 27, 427, 577, 583
BsmAI GTCTC 2 cut(s) 81, 592
BsmFI GGGAC 2 cut(s) 560, 829
BsmI GAATGC 2 cut(s) 349, 543
BsnI GGCC 1 cut(s) 452
Bso31I GGTCTC 1 cut(s) 592
Bsp143I GATC 5 cut(s) 37, 336, 369, 385, 768
BspACI CCGC 2 cut(s) 445, 833
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 1 cut(s) 609
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 4 cut(s) 106, 172, 338, 505
BspMAI CTGCAG 1 cut(s) 403
BspOI GCTAGC 1 cut(s) 650
BspPI GGATC 2 cut(s) 331, 344
BspTI CTTAAG 1 cut(s) 728
BspTNI GGTCTC 1 cut(s) 592
BsrDI GCAATG 2 cut(s) 364, 588
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 5 cut(s) 37, 336, 369, 385, 768
Bst2UI CCWGG 2 cut(s) 23, 892
Bst6I CTCTTC 1 cut(s) 597
BstAFI CTTAAG 1 cut(s) 728
BstC8I GCNNGC 5 cut(s) 198, 648, 711, 750, 798
BstDEI CTNAG 3 cut(s) 201, 596, 666
BstENI CCTNNNNNAGG 1 cut(s) 425
BstF5I GGATG 2 cut(s) 480, 568
BstFNI CGCG 1 cut(s) 267
BstHHI GCGC 1 cut(s) 660
BstKTI GATC 5 cut(s) 40, 339, 372, 388, 771
BstMAI GTCTC 2 cut(s) 81, 592
BstMBI GATC 5 cut(s) 37, 336, 369, 385, 768
BstMWI GCNNNNNNNGC 1 cut(s) 901
BstNI CCWGG 2 cut(s) 23, 892
BstNSI RCATGY 1 cut(s) 800
BstSCI CCNGG 3 cut(s) 21, 576, 890
BstSFI CTRYAG 1 cut(s) 399
BstUI CGCG 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BsuI GTATCC 1 cut(s) 452
BsuRI GGCC 1 cut(s) 452
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 480, 568
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 40, 396
Cac8I GCNNGC 5 cut(s) 198, 648, 711, 750, 798
CfoI GCGC 1 cut(s) 660
Cfr13I GGNCC 2 cut(s) 450, 820
CviAII CATG 4 cut(s) 284, 407, 508, 797
DdeI CTNAG 3 cut(s) 201, 596, 666
DpnI GATC 5 cut(s) 39, 338, 371, 387, 770
DpnII GATC 5 cut(s) 37, 336, 369, 385, 768
DraI TTTAAA 1 cut(s) 855
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
EciI GGCGGA 1 cut(s) 822
Eco31I GGTCTC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 820
Eco57I CTGAAG 1 cut(s) 812
EcoNI CCTNNNNNAGG 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 21, 890
FaeI CATG 4 cut(s) 287, 410, 511, 800
FalI AAGNNNNNCTT 2 cut(s) 697, 729
FaqI GGGAC 2 cut(s) 560, 829
FatI CATG 4 cut(s) 283, 406, 507, 796
FbaI TGATCA 1 cut(s) 385
FokI GGATG 2 cut(s) 487, 575
FspBI CTAG 4 cut(s) 377, 467, 572, 647
GlaI GCGC 1 cut(s) 659
GsaI CCCAGC 1 cut(s) 841
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 452
HapII CCGG 1 cut(s) 578
HhaI GCGC 1 cut(s) 660
Hin1II CATG 4 cut(s) 287, 410, 511, 800
Hin6I GCGC 1 cut(s) 658
HinP1I GCGC 1 cut(s) 658
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 1 cut(s) 324
HpaII CCGG 1 cut(s) 578
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 599
Hpy188III TCNNGA 5 cut(s) 44, 187, 340, 467, 625
HpyAV CCTTC 3 cut(s) 478, 494, 805
HpyCH4IV ACGT 2 cut(s) 110, 238
HpyCH4V TGCA 5 cut(s) 123, 357, 401, 752, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 901
HpyF3I CTNAG 3 cut(s) 201, 596, 666
HpySE526I ACGT 2 cut(s) 110, 238
Hsp92II CATG 4 cut(s) 287, 410, 511, 800
HspAI GCGC 1 cut(s) 658
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 5 cut(s) 37, 336, 369, 385, 768
LmnI GCTCC 2 cut(s) 148, 176
MaeI CTAG 4 cut(s) 377, 467, 572, 647
MaeII ACGT 2 cut(s) 110, 238
MalI GATC 5 cut(s) 39, 338, 371, 387, 770
MboI GATC 5 cut(s) 37, 336, 369, 385, 768
MboII GAAGA 4 cut(s) 32, 584, 871, 886
MflI RGATCY 1 cut(s) 336
MluCI AATT 5 cut(s) 11, 535, 610, 640, 805
MnlI CCTC 4 cut(s) 21, 421, 593, 727
MseI TTAA 6 cut(s) 92, 159, 462, 681, 729, 854
MslI CAYNNNNRTG 1 cut(s) 288
MspCI CTTAAG 1 cut(s) 728
MspI CCGG 1 cut(s) 578
MspR9I CCNGG 3 cut(s) 23, 578, 892
Mva1269I GAATGC 2 cut(s) 349, 543
MvaI CCWGG 2 cut(s) 23, 892
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 901
NciI CCSGG 1 cut(s) 578
NdeII GATC 5 cut(s) 37, 336, 369, 385, 768
NheI GCTAGC 1 cut(s) 646
NlaIII CATG 4 cut(s) 287, 410, 511, 800
NlaIV GGNNCC 4 cut(s) 106, 172, 338, 505
NspI RCATGY 1 cut(s) 800
PaeI GCATGC 1 cut(s) 800
PctI GAATGC 2 cut(s) 349, 543
PfeI GAWTC 1 cut(s) 324
PflFI GACNNNGTC 1 cut(s) 572
Psp6I CCWGG 2 cut(s) 21, 890
PspFI CCCAGC 1 cut(s) 837
PspGI CCWGG 2 cut(s) 21, 890
PspN4I GGNNCC 4 cut(s) 106, 172, 338, 505
PspPI GGNCC 2 cut(s) 450, 820
PstI CTGCAG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 336
PsyI GACNNNGTC 1 cut(s) 572
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 6 cut(s) 92, 159, 462, 681, 729, 854
Sau3AI GATC 5 cut(s) 37, 336, 369, 385, 768
Sau96I GGNCC 2 cut(s) 450, 820
ScrFI CCNGG 3 cut(s) 23, 578, 892
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 820
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SpeI ACTAGT 1 cut(s) 376
SphI GCATGC 1 cut(s) 800
Sse9I AATT 5 cut(s) 11, 535, 610, 640, 805
SsiI CCGC 2 cut(s) 445, 833
SspMI CTAG 4 cut(s) 377, 467, 572, 647
StyD4I CCNGG 3 cut(s) 21, 576, 890
TaiI ACGT 2 cut(s) 113, 241
TaqI TCGA 3 cut(s) 322, 372, 771
TasI AATT 5 cut(s) 11, 535, 610, 640, 805
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 6 cut(s) 92, 159, 462, 681, 729, 854
Tru9I TTAA 6 cut(s) 92, 159, 462, 681, 729, 854
TscAI CASTG 2 cut(s) 40, 403
TspDTI ATGAA 4 cut(s) 17, 300, 497, 536
TspRI CASTG 2 cut(s) 40, 403
Tth111I GACNNNGTC 1 cut(s) 572
Vha464I CTTAAG 1 cut(s) 728
VpaK11BI GGWCC 1 cut(s) 820
XagI CCTNNNNNAGG 1 cut(s) 425
XapI RAATTY 1 cut(s) 11
XbaI TCTAGA 1 cut(s) 466
XceI RCATGY 1 cut(s) 800
XspI CTAG 4 cut(s) 377, 467, 572, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.