Prupe.7G108700_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000155
Physical Location & Seq
Reverse (-)
13700478 .. 13701572
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G108700.1

Sequence Viewer

Length: 1095 bp
ATGGAGCCCTACAAGAACAAGTTATTGGCAACTTCAACGTCTCAAGCTGAAGGAGTTTGTGCTGAGAGTTTAATAGACAGATTTAGTAATCTTCCAGAAGGAGTTGCTCACCGCATTCTCTCCTTCCTCGCTCAAATAGACCTCGCTCGAGTGAGCTGTGTGTCCAAAAGTTGCAGAAAGTTTAATCTCTCATTTCCCTCGTTGAACTTTGATGCAATGCCCTACGCAAACGACATGTGGGAGAGGTTGAAGTTGTTGAATTATTTGGACAGGTTCCTGATCCAACGAGGGGACAATAAGATCCAACACTTTCGTATTTTTTGGATCTTTTTAGGTCCAGCTTCAAGCTTCTCTAACGAGTATTTTCGAGTTATCTCTTGGATCCATGTTGCTGCAAGGTGCAATGTCGAAGTGCTTGATCTGGAACTCTACATGTGTGAGGCGACAACGACGTTAGTATTGCCATCTTGCCTCTTTCTCTGTCGATCTTTGCGGTTACTAACAGTGGATTTGAAGTTTAAGCTTTTTCAAACCCCATCCTTAACTAGTTCCACCACCCTCCAATGCTTGAAGTTGAAAAATGTCACCATAGACGAGGGGTTGGGCCAATGGATCTCGTGTTCCTGCAAATGCATCAAGGAGCTGTGGCTTGAGCTTGTTCACGGGGCAAAACAGATCACCATCAGCAGCTCATCTCTGGAAACCCTGCATTTCGTTTCGTGCTATGCTTATTACAGTTTTCAAAACCCCAGTGGCAACTTTCATCTTAACATCTCAGGTGAAAGGCTTGAAGACATCTACATTGACTGGAAAGTTATCCCAACCGGTCACTCGATAAGCATTTTCGCTCCGAATCTTAAACACTTGAAATGGATTGGAACTTTGGCGAGCCGCCAATATCTGGAGAAATTGACGTGTCTAGAAAAAGCTGAGATTTTTCTCCATCCCAGGAGTGAGGATTTCAGCAAACTATTCAGTGTGCTTTCCAGTATCCGCAGTGTTAAACTTCTTGTTCTAAATGAAGAGACCACAAAGGCAATATTAAGTTTTTTTCTTTCTTCCTTTTTTGTTTGTTTTGTATATACATTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

365

Amino Acids

41.74

Weight (kDa)

8.3

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 901
AciI CCGC 4 cut(s) 112, 493, 892, 994
AclWI GGATC 6 cut(s) 274, 295, 332, 376, 389, 620
AcuI CTGAAG 1 cut(s) 69
AfiI CCNNNNNNNGG 2 cut(s) 289, 901
AflIII ACRYGT 3 cut(s) 234, 432, 914
AgeI ACCGGT 1 cut(s) 824
AhlI ACTAGT 1 cut(s) 545
AjiI CACGTC 1 cut(s) 915
AjnI CCWGG 1 cut(s) 947
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AloI GAACNNNNNNTCC 2 cut(s) 604, 636
AluBI AGCT 9 cut(s) 47, 156, 341, 348, 523, 643, 655, 690, 929
AluI AGCT 9 cut(s) 47, 156, 341, 348, 523, 643, 655, 690, 929
Alw26I GTCTC 2 cut(s) 45, 1019
AlwI GGATC 6 cut(s) 274, 295, 332, 376, 389, 620
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 1 cut(s) 604
ApeKI GCWGC 2 cut(s) 392, 687
AsiGI ACCGGT 1 cut(s) 824
AspS9I GGNCC 2 cut(s) 335, 604
AsuHPI GGTGA 4 cut(s) 101, 577, 670, 791
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 335
BamHI GGATCC 1 cut(s) 381
BanII GRGCYC 1 cut(s) 9
BauI CACGAG 1 cut(s) 616
BbsI GAAGAC 1 cut(s) 798
BbvI GCAGC 2 cut(s) 379, 699
BccI CCATC 4 cut(s) 472, 544, 689, 951
BciT130I CCWGG 1 cut(s) 949
BciVI GTATCC 1 cut(s) 1001
BcoDI GTCTC 2 cut(s) 45, 1019
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 2 cut(s) 546, 920
BfuI GTATCC 1 cut(s) 1001
BisI GCNGC 3 cut(s) 393, 688, 892
BlsI GCNGC 3 cut(s) 394, 689, 893
Bme1390I CCNGG 1 cut(s) 949
Bme18I GGWCC 1 cut(s) 335
BmeT110I CYCGRG 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 915
BmgT120I GGNCC 2 cut(s) 335, 604
BmiI GGNNCC 3 cut(s) 6, 275, 383
BmrFI CCNGG 1 cut(s) 949
BmrI ACTGGG 1 cut(s) 744
BmsI GCATC 2 cut(s) 202, 642
BmuI ACTGGG 1 cut(s) 744
BpiI GAAGAC 1 cut(s) 798
BpmI CTGGAG 1 cut(s) 923
BpuEI CTTGAG 2 cut(s) 27, 671
BsaBI GATNNNNATC 1 cut(s) 680
BsaI GGTCTC 1 cut(s) 1019
BsaJI CCNNGG 1 cut(s) 947
BsaWI WCCGGW 1 cut(s) 824
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 901
Bse118I RCCGGY 1 cut(s) 824
Bse1I ACTGG 3 cut(s) 750, 812, 987
Bse3DI GCAATG 2 cut(s) 222, 409
Bse8I GATNNNNATC 1 cut(s) 680
BseBI CCWGG 1 cut(s) 949
BseDI CCNNGG 1 cut(s) 947
BseGI GGATG 2 cut(s) 536, 943
BseJI GATNNNNATC 1 cut(s) 680
BseLI CCNNNNNNNGG 2 cut(s) 289, 901
BseMI GCAATG 2 cut(s) 222, 409
BseMII CTCAG 3 cut(s) 54, 789, 921
BseNI ACTGG 3 cut(s) 750, 812, 987
BseXI GCAGC 2 cut(s) 379, 699
BshFI GGCC 1 cut(s) 606
BshTI ACCGGT 1 cut(s) 824
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 825
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 289, 901
BsmAI GTCTC 2 cut(s) 45, 1019
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 1 cut(s) 606
Bso31I GGTCTC 1 cut(s) 1019
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 8 cut(s) 279, 300, 324, 381, 418, 485, 612, 675
BspACI CCGC 4 cut(s) 112, 493, 892, 994
BspANI GGCC 1 cut(s) 606
BspCNI CTCAG 3 cut(s) 55, 788, 922
BspLI GGNNCC 3 cut(s) 6, 275, 383
BspPI GGATC 6 cut(s) 274, 295, 332, 376, 389, 620
BspTNI GGTCTC 1 cut(s) 1019
BsrDI GCAATG 2 cut(s) 222, 409
BsrFI RCCGGY 1 cut(s) 824
BsrI ACTGG 3 cut(s) 750, 812, 987
BssAI RCCGGY 1 cut(s) 824
BssECI CCNNGG 1 cut(s) 947
BssMI GATC 8 cut(s) 279, 300, 324, 381, 418, 485, 612, 675
BssSI CACGAG 1 cut(s) 616
Bst2BI CACGAG 1 cut(s) 616
Bst2UI CCWGG 1 cut(s) 949
Bst4CI ACNGT 2 cut(s) 505, 737
Bst6I CTCTTC 1 cut(s) 1017
BstC8I GCNNGC 1 cut(s) 889
BstDEI CTNAG 3 cut(s) 63, 775, 930
BstF5I GGATG 2 cut(s) 536, 943
BstKTI GATC 8 cut(s) 282, 303, 327, 384, 421, 488, 615, 678
BstMAI GTCTC 2 cut(s) 45, 1019
BstMBI GATC 8 cut(s) 279, 300, 324, 381, 418, 485, 612, 675
BstNI CCWGG 1 cut(s) 949
BstNSI RCATGY 2 cut(s) 238, 436
BstSCI CCNGG 1 cut(s) 947
BstV1I GCAGC 2 cut(s) 379, 699
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 4 cut(s) 300, 324, 381, 612
BstYI RGATCY 4 cut(s) 300, 324, 381, 612
BsuI GTATCC 1 cut(s) 1001
BsuRI GGCC 1 cut(s) 606
BtrI CACGTC 1 cut(s) 915
BtsCI GGATG 2 cut(s) 536, 943
BtsI GCAGTG 1 cut(s) 1003
BtsIMutI CAGTG 4 cut(s) 510, 757, 982, 1003
Cac8I GCNNGC 1 cut(s) 889
Cfr10I RCCGGY 1 cut(s) 824
Cfr13I GGNCC 2 cut(s) 335, 604
CspAI ACCGGT 1 cut(s) 824
CviAII CATG 3 cut(s) 235, 386, 433
DdeI CTNAG 3 cut(s) 63, 775, 930
DpnI GATC 8 cut(s) 281, 302, 326, 383, 420, 487, 614, 677
DpnII GATC 8 cut(s) 279, 300, 324, 381, 418, 485, 612, 675
Eam1104I CTCTTC 1 cut(s) 1017
EarI CTCTTC 1 cut(s) 1017
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 1019
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 947
EcoT22I ATGCAT 1 cut(s) 635
EcoT38I GRGCYC 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 3 cut(s) 238, 389, 436
FaiI YATR 7 cut(s) 236, 387, 434, 590, 726, 1081, 1083
FaqI GGGAC 1 cut(s) 305
FatI CATG 3 cut(s) 234, 385, 432
Fnu4HI GCNGC 3 cut(s) 393, 688, 892
FokI GGATG 2 cut(s) 523, 930
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 393, 688, 892
FspBI CTAG 2 cut(s) 546, 920
GluI GCNGC 3 cut(s) 393, 688, 892
GsuI CTGGAG 1 cut(s) 923
HaeIII GGCC 1 cut(s) 606
HapII CCGG 1 cut(s) 825
Hin1II CATG 3 cut(s) 238, 389, 436
HindIII AAGCTT 2 cut(s) 346, 521
HinfI GANTC 1 cut(s) 853
HpaII CCGG 1 cut(s) 825
HphI GGTGA 4 cut(s) 101, 577, 670, 791
Hpy166II GTNNAC 1 cut(s) 661
Hpy188I TCNGA 1 cut(s) 852
Hpy188III TCNNGA 6 cut(s) 95, 277, 422, 698, 902, 920
Hpy8I GTNNAC 1 cut(s) 661
Hpy99I CGWCG 1 cut(s) 454
HpyAV CCTTC 3 cut(s) 44, 92, 133
HpyCH4III ACNGT 2 cut(s) 505, 737
HpyCH4IV ACGT 3 cut(s) 38, 452, 914
HpyCH4V TGCA 7 cut(s) 174, 215, 395, 402, 627, 633, 709
HpyF3I CTNAG 3 cut(s) 63, 775, 930
HpySE526I ACGT 3 cut(s) 38, 452, 914
Hsp92II CATG 3 cut(s) 238, 389, 436
Kzo9I GATC 8 cut(s) 279, 300, 324, 381, 418, 485, 612, 675
LmnI GCTCC 3 cut(s) 4, 640, 853
Lsp1109I GCAGC 2 cut(s) 379, 699
LweI GCATC 2 cut(s) 202, 642
MaeI CTAG 2 cut(s) 546, 920
MaeII ACGT 3 cut(s) 38, 452, 914
MaeIII GTNAC 3 cut(s) 495, 583, 827
MalI GATC 8 cut(s) 281, 302, 326, 383, 420, 487, 614, 677
MboI GATC 8 cut(s) 279, 300, 324, 381, 418, 485, 612, 675
MboII GAAGA 4 cut(s) 83, 803, 1034, 1050
MflI RGATCY 4 cut(s) 300, 324, 381, 612
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 2 cut(s) 259, 908
MmeI TCCRAC 2 cut(s) 307, 328
Mph1103I ATGCAT 1 cut(s) 635
MseI TTAA 8 cut(s) 71, 183, 519, 542, 768, 858, 1002, 1043
MspI CCGG 1 cut(s) 825
MspR9I CCNGG 1 cut(s) 949
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 1 cut(s) 949
NdeII GATC 8 cut(s) 279, 300, 324, 381, 418, 485, 612, 675
NlaIII CATG 3 cut(s) 238, 389, 436
NlaIV GGNNCC 3 cut(s) 6, 275, 383
NmuCI GTSAC 2 cut(s) 583, 827
NsiI ATGCAT 1 cut(s) 635
NspI RCATGY 2 cut(s) 238, 436
PaeR7I CTCGAG 1 cut(s) 147
PciI ACATGT 2 cut(s) 234, 432
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 853
PflMI CCANNNNNTGG 1 cut(s) 901
PinAI ACCGGT 1 cut(s) 824
PkrI GCNGC 3 cut(s) 394, 689, 893
PscI ACATGT 2 cut(s) 234, 432
Psp6I CCWGG 1 cut(s) 947
PspGI CCWGG 1 cut(s) 947
PspN4I GGNNCC 3 cut(s) 6, 275, 383
PspPI GGNCC 2 cut(s) 335, 604
PspXI VCTCGAGB 1 cut(s) 147
PsuI RGATCY 4 cut(s) 300, 324, 381, 612
SaqAI TTAA 8 cut(s) 71, 183, 519, 542, 768, 858, 1002, 1043
SatI GCNGC 3 cut(s) 393, 688, 892
Sau3AI GATC 8 cut(s) 279, 300, 324, 381, 418, 485, 612, 675
Sau96I GGNCC 2 cut(s) 335, 604
ScrFI CCNGG 1 cut(s) 949
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 2 cut(s) 202, 642
Sfr274I CTCGAG 1 cut(s) 147
SinI GGWCC 1 cut(s) 335
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 3 cut(s) 42, 147, 650
SmoI CTYRAG 3 cut(s) 42, 147, 650
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 2 cut(s) 259, 908
SsiI CCGC 4 cut(s) 112, 493, 892, 994
SspI AATATT 1 cut(s) 1041
SspMI CTAG 2 cut(s) 546, 920
StyD4I CCNGG 1 cut(s) 947
TaaI ACNGT 2 cut(s) 505, 737
TaiI ACGT 3 cut(s) 41, 455, 917
TaqI TCGA 5 cut(s) 148, 367, 408, 484, 833
TasI AATT 2 cut(s) 259, 908
TauI GCSGC 1 cut(s) 894
TfiI GAWTC 1 cut(s) 853
Tru1I TTAA 8 cut(s) 71, 183, 519, 542, 768, 858, 1002, 1043
Tru9I TTAA 8 cut(s) 71, 183, 519, 542, 768, 858, 1002, 1043
TscAI CASTG 4 cut(s) 510, 757, 982, 1003
TseFI GTSAC 2 cut(s) 583, 827
TseI GCWGC 2 cut(s) 392, 687
Tsp45I GTSAC 2 cut(s) 583, 827
TspDTI ATGAA 2 cut(s) 752, 1035
TspRI CASTG 4 cut(s) 510, 757, 982, 1003
Van91I CCANNNNNTGG 1 cut(s) 901
VpaK11BI GGWCC 1 cut(s) 335
XbaI TCTAGA 1 cut(s) 919
XceI RCATGY 2 cut(s) 238, 436
XhoI CTCGAG 1 cut(s) 147
XspI CTAG 2 cut(s) 546, 920
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.