Rmu_sc0016637.1_g000003

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016637.1
OG0000155
Physical Location & Seq
Forward (+)
10082 .. 11229
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016637.1_g000003.1.cds

Sequence Viewer

Length: 771 bp
atgaagtataagtataggttccttacattacccgcctcggcttgtttcgctaatattgaatgcttgaagctgaaaaatattcatgtagtggatgagggatttttcagatggatctcatcctcttgcaagtgcattaaggaattacgtctcgaaggaattgaggggataagtcatctctcaattgaaagttcatctttagtgtcgtttagtgttgtgcatccgtttcagtcggatccactgattctcagcatctctgccgagaaactggtagacctagttattgactgggggtttcaaaattgcaagaaggtgttgaatgttactgctccggaagttagatatttgaagttggaagggaattctttgattcaccaaaaacttggggaattggggcgtttagaaaaagctgatctttgtctgagacctggagggaatgacattaacatgctatctgagtttattagcagtatacgaagtgtcaaagttcttattttaggggaggagatcctaaaggctcttttccagaaaggatccagaccagcacctttagataatgttcatcatctgtgtgtgcatgtcggttacatgcttgatgatgttgttccggcaatggtctctatcttgaaaggaattcctaatttgagtactttgtacataaagtcatttccaatctttatccaccttggatctaaagtaagtaaagccctgttttttgttctgtatacatatttgcaattgttatttctagactccggtgcagttagatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

256

Amino Acids

28.64

Weight (kDa)

8.61

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 270, 469, 722
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 1 cut(s) 33
AclWI GGATC 7 cut(s) 119, 227, 240, 499, 525, 538, 694
AcsI RAATTY 2 cut(s) 358, 630
AfaI GTAC 2 cut(s) 646, 653
AgsI TTSAA 7 cut(s) 59, 67, 185, 296, 316, 346, 625
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 2 cut(s) 70, 407
AluI AGCT 2 cut(s) 70, 407
Alw26I GTCTC 3 cut(s) 152, 415, 619
AlwI GGATC 7 cut(s) 119, 227, 240, 499, 525, 538, 694
Aor13HI TCCGGA 1 cut(s) 328
ApoI RAATTY 2 cut(s) 358, 630
AsuHPI GGTGA 1 cut(s) 362
BamHI GGATCC 2 cut(s) 232, 530
BccI CCATC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 426
BcoDI GTCTC 3 cut(s) 152, 415, 619
BfaI CTAG 2 cut(s) 275, 746
BmcAI AGTACT 1 cut(s) 646
Bme1390I CCNGG 1 cut(s) 426
BmiI GGNNCC 3 cut(s) 20, 234, 532
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 2 cut(s) 226, 258
BmuI ACTGGG 1 cut(s) 295
BpmI CTGGAG 1 cut(s) 447
BsaI GGTCTC 2 cut(s) 415, 619
BsaJI CCNNGG 2 cut(s) 36, 682
BsaWI WCCGGW 2 cut(s) 328, 752
Bse1I ACTGG 2 cut(s) 270, 290
Bse3DI GCAATG 1 cut(s) 615
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 36, 682
BseGI GGATG 3 cut(s) 97, 116, 217
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 3 cut(s) 259, 410, 444
BseNI ACTGG 2 cut(s) 270, 290
BseRI GAGGAG 1 cut(s) 515
BsiSI CCGG 3 cut(s) 329, 605, 753
BsmAI GTCTC 3 cut(s) 152, 415, 619
BsmBI CGTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 65
Bso31I GGTCTC 2 cut(s) 415, 619
Bsp13I TCCGGA 1 cut(s) 328
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 7 cut(s) 111, 232, 409, 504, 530, 686, 764
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 3 cut(s) 258, 411, 445
BspEI TCCGGA 1 cut(s) 328
BspHI TCATGA 1 cut(s) 767
BspLI GGNNCC 3 cut(s) 20, 234, 532
BspPI GGATC 7 cut(s) 119, 227, 240, 499, 525, 538, 694
BspTNI GGTCTC 2 cut(s) 415, 619
BsrDI GCAATG 1 cut(s) 615
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 2 cut(s) 270, 290
BssECI CCNNGG 2 cut(s) 36, 682
BssMI GATC 7 cut(s) 111, 232, 409, 504, 530, 686, 764
BssNAI GTATAC 2 cut(s) 470, 723
BssT1I CCWWGG 1 cut(s) 682
Bst1107I GTATAC 2 cut(s) 470, 723
Bst2UI CCWGG 1 cut(s) 426
BstAUI TGTACA 1 cut(s) 651
BstDEI CTNAG 3 cut(s) 245, 419, 453
BstF5I GGATG 3 cut(s) 97, 116, 217
BstKTI GATC 7 cut(s) 114, 235, 412, 507, 533, 689, 767
BstMAI GTCTC 3 cut(s) 152, 415, 619
BstMBI GATC 7 cut(s) 111, 232, 409, 504, 530, 686, 764
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 3 cut(s) 448, 578, 589
BstSCI CCNGG 1 cut(s) 424
BstX2I RGATCY 5 cut(s) 111, 232, 504, 530, 686
BstXI CCANNNNNNTGG 1 cut(s) 380
BstYI RGATCY 5 cut(s) 111, 232, 504, 530, 686
BstZ17I GTATAC 2 cut(s) 470, 723
BtsCI GGATG 3 cut(s) 97, 116, 217
BtsIMutI CAGTG 1 cut(s) 236
CciI TCATGA 1 cut(s) 767
Csp6I GTAC 2 cut(s) 645, 652
CviAII CATG 5 cut(s) 83, 445, 575, 586, 768
CviJI RGCY 5 cut(s) 41, 70, 407, 515, 704
CviKI_1 RGCY 5 cut(s) 41, 70, 407, 515, 704
CviQI GTAC 2 cut(s) 645, 652
DdeI CTNAG 3 cut(s) 245, 419, 453
DpnI GATC 7 cut(s) 113, 234, 411, 506, 532, 688, 766
DpnII GATC 7 cut(s) 111, 232, 409, 504, 530, 686, 764
Eco130I CCWWGG 1 cut(s) 682
Eco31I GGTCTC 2 cut(s) 415, 619
EcoRI GAATTC 2 cut(s) 358, 630
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 682
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 5 cut(s) 86, 448, 578, 589, 771
FalI AAGNNNNNCTT 4 cut(s) 178, 210, 396, 428
FatI CATG 5 cut(s) 82, 444, 574, 585, 767
FauI CCCGC 1 cut(s) 40
FblI GTMKAC 3 cut(s) 270, 469, 722
FokI GGATG 3 cut(s) 103, 104, 204
FspBI CTAG 2 cut(s) 275, 746
GsuI CTGGAG 1 cut(s) 447
HapII CCGG 3 cut(s) 329, 605, 753
Hin1II CATG 5 cut(s) 86, 448, 578, 589, 771
HinfI GANTC 3 cut(s) 241, 367, 749
HpaII CCGG 3 cut(s) 329, 605, 753
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 3 cut(s) 271, 470, 723
Hpy188I TCNGA 4 cut(s) 107, 232, 420, 454
Hpy188III TCNNGA 7 cut(s) 149, 329, 523, 534, 622, 746, 768
Hpy8I GTNNAC 3 cut(s) 271, 470, 723
HpyAV CCTTC 3 cut(s) 146, 301, 347
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 7 cut(s) 126, 132, 217, 303, 574, 733, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 3 cut(s) 245, 419, 453
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 5 cut(s) 86, 448, 578, 589, 771
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 7 cut(s) 111, 232, 409, 504, 530, 686, 764
LmnI GCTCC 1 cut(s) 331
LweI GCATC 2 cut(s) 226, 258
MaeI CTAG 2 cut(s) 275, 746
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 2 cut(s) 319, 581
MalI GATC 7 cut(s) 113, 234, 411, 506, 532, 688, 766
MboI GATC 7 cut(s) 111, 232, 409, 504, 530, 686, 764
MfeI CAATTG 2 cut(s) 180, 734
MflI RGATCY 5 cut(s) 111, 232, 504, 530, 686
MluCI AATT 9 cut(s) 140, 156, 180, 298, 358, 386, 630, 637, 734
MlyI GAGTC 1 cut(s) 743
MmeI TCCRAC 2 cut(s) 210, 330
MnlI CCTC 6 cut(s) 46, 88, 130, 154, 422, 493
MroI TCCGGA 1 cut(s) 328
MseI TTAA 2 cut(s) 135, 441
MslI CAYNNNNRTG 2 cut(s) 443, 567
MspI CCGG 3 cut(s) 329, 605, 753
MspR9I CCNGG 1 cut(s) 426
MunI CAATTG 2 cut(s) 180, 734
Mva1269I GAATGC 1 cut(s) 65
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 7 cut(s) 111, 232, 409, 504, 530, 686, 764
NlaIII CATG 5 cut(s) 86, 448, 578, 589, 771
NlaIV GGNNCC 3 cut(s) 20, 234, 532
NmeAIII GCCGAG 2 cut(s) 17, 283
NspI RCATGY 3 cut(s) 448, 578, 589
PagI TCATGA 1 cut(s) 767
PctI GAATGC 1 cut(s) 65
PfeI GAWTC 2 cut(s) 241, 367
PleI GAGTC 1 cut(s) 743
PpsI GAGTC 1 cut(s) 743
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 3 cut(s) 20, 234, 532
PsuI RGATCY 5 cut(s) 111, 232, 504, 530, 686
RsaI GTAC 2 cut(s) 646, 653
RsaNI GTAC 2 cut(s) 645, 652
RseI CAYNNNNRTG 2 cut(s) 443, 567
SaqAI TTAA 2 cut(s) 135, 441
Sau3AI GATC 7 cut(s) 111, 232, 409, 504, 530, 686, 764
ScaI AGTACT 1 cut(s) 646
SchI GAGTC 1 cut(s) 743
ScrFI CCNGG 1 cut(s) 426
SetI ASST 9 cut(s) 20, 72, 148, 276, 312, 409, 427, 547, 684
SfaNI GCATC 2 cut(s) 226, 258
SmiMI CAYNNNNRTG 2 cut(s) 443, 567
Sse9I AATT 9 cut(s) 140, 156, 180, 298, 358, 386, 630, 637, 734
SsiI CCGC 1 cut(s) 33
SspI AATATT 2 cut(s) 55, 79
SspMI CTAG 2 cut(s) 275, 746
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 1 cut(s) 682
TaiI ACGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 150
TasI AATT 9 cut(s) 140, 156, 180, 298, 358, 386, 630, 637, 734
TatI WGTACW 2 cut(s) 644, 651
TfiI GAWTC 2 cut(s) 241, 367
Tru1I TTAA 2 cut(s) 135, 441
Tru9I TTAA 2 cut(s) 135, 441
TscAI CASTG 1 cut(s) 243
TspDTI ATGAA 4 cut(s) 17, 71, 180, 548
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 1 cut(s) 243
XapI RAATTY 2 cut(s) 358, 630
XbaI TCTAGA 1 cut(s) 745
XceI RCATGY 3 cut(s) 448, 578, 589
XmiI GTMKAC 3 cut(s) 270, 469, 722
XspI CTAG 2 cut(s) 275, 746
ZrmI AGTACT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.