Rh3DG211900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000155
Physical Location & Seq
Forward (+)
19609184 .. 19609753
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG211900.1

Sequence Viewer

Length: 570 bp
ATGGAACAGAAGCATATGTTATCTGCAGTTGGAGGTTCTGAAGCTCAAGTAGCTCCTAGGGATAGGAAATTAGACAGATTTAGTGGTCTTCCAGACAATGTGGCTCATCATATTCTTTCATTCCTCAATTTTAGGGCACTCACTCGACTGGGTGGTGTTTCCAAAAGGTGCAGAGAGTGGTATCTGTCGAACCCATCATTTGATATCTATGATTATGGACGAAACAAGCAAGATCAGTTGGGCTTGTTGAATTTTATTGGTAGGTTCTTGGTCCATCGTGGGAATAGTAAGATGCCATATGTTCGTATTAGTTGGGGTTTCTGTTCTGGCATTTCTGATGAGATTTTTCAGTTGATCACATGGATCCAAATTGCAATAAGGTGTAATGTTGAAGAGCTTGAATTTCAGGTTATGAATTGGCATTCACCTGAGACTATAGAATTTCCATCTTGCATTGTTCTTTGTCGATCTTTGAGGTCTCTAGTGCTTGACTTCCATGCAATTCTTAAGTTTCCCACCTTTGCTTCTTTCACTAGTCTCCAAAACTTAGAGTTAAAACATGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

189

Amino Acids

21.79

Weight (kDa)

8.65

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 120 - 188 6e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 358, 371
AcsI RAATTY 3 cut(s) 250, 401, 440
AcuI CTGAAG 1 cut(s) 60
AflII CTTAAG 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 3 cut(s) 250, 392, 401
AhlI ACTAGT 1 cut(s) 533
AluBI AGCT 3 cut(s) 44, 53, 397
AluI AGCT 3 cut(s) 44, 53, 397
Alw26I GTCTC 3 cut(s) 425, 483, 542
AlwI GGATC 2 cut(s) 358, 371
ApoI RAATTY 3 cut(s) 250, 401, 440
AspA2I CCTAGG 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 417
AvaII GGWCC 1 cut(s) 271
AvrII CCTAGG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 139
BamHI GGATCC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 80
BccI CCATC 3 cut(s) 202, 282, 454
BclI TGATCA 1 cut(s) 354
BcoDI GTCTC 3 cut(s) 425, 483, 542
BcuI ACTAGT 1 cut(s) 533
BfaI CTAG 3 cut(s) 57, 482, 534
BfmI CTRYAG 2 cut(s) 24, 435
BfrI CTTAAG 1 cut(s) 506
BlnI CCTAGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 365
BmrI ACTGGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 190
BsmAI GTCTC 3 cut(s) 425, 483, 542
BsmI GAATGC 1 cut(s) 421
Bso31I GGTCTC 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 4 cut(s) 232, 354, 363, 467
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 365
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 2 cut(s) 358, 371
BspQI GCTCTTC 1 cut(s) 387
BspTI CTTAAG 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 483
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 4 cut(s) 232, 354, 363, 467
BssT1I CCWWGG 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 387
BstAFI CTTAAG 1 cut(s) 506
BstDEI CTNAG 2 cut(s) 429, 547
BstKTI GATC 4 cut(s) 235, 357, 366, 470
BstMAI GTCTC 3 cut(s) 425, 483, 542
BstMBI GATC 4 cut(s) 232, 354, 363, 467
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 563
BstSFI CTRYAG 2 cut(s) 24, 435
BstSLI GKGCMC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 271
CviAII CATG 3 cut(s) 360, 497, 560
CviJI RGCY 5 cut(s) 44, 53, 104, 243, 397
CviKI_1 RGCY 5 cut(s) 44, 53, 104, 243, 397
DdeI CTNAG 2 cut(s) 429, 547
DpnI GATC 4 cut(s) 234, 356, 365, 469
DpnII GATC 4 cut(s) 232, 354, 363, 467
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 483
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 60
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 3 cut(s) 363, 500, 563
FatI CATG 3 cut(s) 359, 496, 559
FauNDI CATATG 2 cut(s) 15, 298
FbaI TGATCA 1 cut(s) 354
FspBI CTAG 3 cut(s) 57, 482, 534
Hin1II CATG 3 cut(s) 363, 500, 563
HphI GGTGA 1 cut(s) 417
Hpy188I TCNGA 2 cut(s) 40, 337
Hpy188III TCNNGA 1 cut(s) 92
HpyCH4V TGCA 5 cut(s) 26, 171, 374, 453, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 429, 547
Hsp92II CATG 3 cut(s) 363, 500, 563
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 4 cut(s) 232, 354, 363, 467
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 5 cut(s) 105, 134, 312, 392, 441
LweI GCATC 1 cut(s) 282
MaeI CTAG 3 cut(s) 57, 482, 534
MalI GATC 4 cut(s) 234, 356, 365, 469
MboI GATC 4 cut(s) 232, 354, 363, 467
MboII GAAGA 2 cut(s) 80, 404
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 8 cut(s) 68, 127, 250, 369, 401, 415, 440, 501
MmeI TCCRAC 2 cut(s) 10, 544
MnlI CCTC 3 cut(s) 26, 134, 468
MseI TTAA 2 cut(s) 507, 554
MspCI CTTAAG 1 cut(s) 506
Mva1269I GAATGC 1 cut(s) 421
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeI CATATG 2 cut(s) 15, 298
NdeII GATC 4 cut(s) 232, 354, 363, 467
NlaIII CATG 3 cut(s) 363, 500, 563
NlaIV GGNNCC 1 cut(s) 365
NspI RCATGY 1 cut(s) 563
PciI ACATGT 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 387
PctI GAATGC 1 cut(s) 421
PscI ACATGT 1 cut(s) 559
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 2 cut(s) 507, 554
Sau3AI GATC 4 cut(s) 232, 354, 363, 467
Sau96I GGNCC 1 cut(s) 271
SduI GDGCHC 1 cut(s) 139
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 2 cut(s) 24, 435
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 2 cut(s) 45, 506
SmoI CTYRAG 2 cut(s) 45, 506
SpeI ACTAGT 1 cut(s) 533
Sse9I AATT 8 cut(s) 68, 127, 250, 369, 401, 415, 440, 501
SspMI CTAG 3 cut(s) 57, 482, 534
StyI CCWWGG 1 cut(s) 56
TaqI TCGA 3 cut(s) 145, 188, 466
TasI AATT 8 cut(s) 68, 127, 250, 369, 401, 415, 440, 501
Tru1I TTAA 2 cut(s) 507, 554
Tru9I TTAA 2 cut(s) 507, 554
TspDTI ATGAA 2 cut(s) 108, 428
Vha464I CTTAAG 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 3 cut(s) 250, 401, 440
XceI RCATGY 1 cut(s) 563
XmaJI CCTAGG 1 cut(s) 56
XspI CTAG 3 cut(s) 57, 482, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.