Rh3DG213900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000155
Physical Location & Seq
Forward (+)
19750848 .. 19751651
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG213900.1

Sequence Viewer

Length: 804 bp
ATGGAAGACAGGGGGAAAAGCAAGTTATTAAATACTACTGTAAGTTGTCAAGGTCATGCAGTTAGAGCTGCTACAGAGGGTTTGATTGATAGGTTGAGTAATCTTCCGGACCATGTTGCTCATCACATTCTTTCATTCCTTGAAATTACAGACCTTACTCGTTTCGGTTGTGTGTCCAAAGGATGCCGAGAACTTTATCTGTCAACTCCGTCATTGAATTTTGATGGATTTTCCAGCGAGCACTTACAGGGTTATGATCAGAGGTTGAGATTGTGGAGTTATTTGGATAGGTACTTTTTTCATCGTGGGGTTAATAAGCTAGAGCGATTTCATTTTCACTGGGAACTTCACTATGCAGACCAACAAACAATCTCACGTGAAGATGAGAATTTTCGTTTGGACAAATGGATCTACAATGCCATAAGGTGTAACGTTGAAGTCCTTGATATTAAGATCAAGAGTAGGTATCTGGAAGCACCGCCCTTACCTTTTTGCGTCTTACTAAGTAGATCTTTGAAATCTCTGTCTGTGCATATGTATGGTAATATTTCTAAAGCACCCTCACCTGCTTCTTTCTCTAATCTGGAATGCTTGAAGTTGCGAGGTGTTATTCTAGTAGATGAGGGGTTTTCAAATGGATCTCTTGTTCATGCACATGCATTAAGGAATTATGTCTTACATGGGTCCGTGGTAATGGGGCAAAGCATGTCACTATTGAAAGCTCATCTTTGGAATCATTGTGCATTGAGTGGGTTTGTAGTATTCATCATCTTTACATTGCCGGTGAGAAGCTTAGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

267

Amino Acids

30.58

Weight (kDa)

8.65

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 32 - 65 1.7e-07 F-box domain
F-box-like PF12937 32 - 65 9e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 574
Acc36I ACCTGC 1 cut(s) 574
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 1 cut(s) 479
AclI AACGTT 1 cut(s) 432
AclWI GGATC 2 cut(s) 416, 646
AcsI RAATTY 2 cut(s) 217, 388
AcvI CACGTG 1 cut(s) 377
AfaI GTAC 1 cut(s) 293
AgsI TTSAA 7 cut(s) 143, 217, 437, 517, 595, 633, 718
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
AluBI AGCT 4 cut(s) 68, 319, 722, 792
AluI AGCT 4 cut(s) 68, 319, 722, 792
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 2 cut(s) 416, 646
Aor13HI TCCGGA 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 217, 388
AspS9I GGNCC 2 cut(s) 109, 684
AsuHPI GGTGA 2 cut(s) 555, 796
AvaII GGWCC 2 cut(s) 109, 684
BbrPI CACGTG 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 218
BclI TGATCA 1 cut(s) 256
BfaI CTAG 2 cut(s) 320, 614
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 574
BglII AGATCT 1 cut(s) 509
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme18I GGWCC 2 cut(s) 109, 684
BmgT120I GGNCC 2 cut(s) 109, 684
BmiI GGNNCC 1 cut(s) 685
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 173
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 12
BsaAI YACGTR 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 687
BsaWI WCCGGW 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 781
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 776
BseAI TCCGGA 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 687
BseGI GGATG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 776
BseNI ACTGG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 2 cut(s) 107, 782
BsmI GAATGC 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 243
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 5 cut(s) 256, 408, 453, 509, 638
BspACI CCGC 1 cut(s) 479
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 685
BspMI ACCTGC 1 cut(s) 574
BspPI GGATC 2 cut(s) 416, 646
BsrDI GCAATG 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 781
BsrI ACTGG 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 781
BssECI CCNNGG 1 cut(s) 687
BssMI GATC 5 cut(s) 256, 408, 453, 509, 638
Bst4CI ACNGT 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 503, 793
BstDSI CCRYGG 1 cut(s) 687
BstF5I GGATG 1 cut(s) 188
BstKTI GATC 5 cut(s) 259, 411, 456, 512, 641
BstMBI GATC 5 cut(s) 256, 408, 453, 509, 638
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNSI RCATGY 2 cut(s) 659, 709
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 3 cut(s) 408, 509, 638
BstYI RGATCY 3 cut(s) 408, 509, 638
BtgI CCRYGG 1 cut(s) 687
BtsCI GGATG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 337
BveI ACCTGC 1 cut(s) 574
Cac8I GCNNGC 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 781
Cfr13I GGNCC 2 cut(s) 109, 684
CseI GACGC 1 cut(s) 484
Csp6I GTAC 1 cut(s) 292
CviAII CATG 6 cut(s) 56, 113, 650, 656, 680, 706
CviJI RGCY 4 cut(s) 68, 319, 722, 792
CviKI_1 RGCY 4 cut(s) 68, 319, 722, 792
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 503, 793
DpnI GATC 5 cut(s) 258, 410, 455, 511, 640
DpnII GATC 5 cut(s) 256, 408, 453, 509, 638
Eco47I GGWCC 2 cut(s) 109, 684
Eco72I CACGTG 1 cut(s) 377
EcoT22I ATGCAT 1 cut(s) 661
FaeI CATG 6 cut(s) 59, 116, 653, 659, 683, 709
FalI AAGNNNNNCTT 4 cut(s) 496, 528, 711, 743
FatI CATG 6 cut(s) 55, 112, 649, 655, 679, 705
FauNDI CATATG 1 cut(s) 534
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 320, 614
GluI GCNGC 1 cut(s) 69
HapII CCGG 2 cut(s) 107, 782
HgaI GACGC 1 cut(s) 484
Hin1II CATG 6 cut(s) 59, 116, 653, 659, 683, 709
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 790
HinfI GANTC 1 cut(s) 733
HpaII CCGG 2 cut(s) 107, 782
HphI GGTGA 2 cut(s) 555, 796
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 4 cut(s) 107, 457, 470, 584
Hpy8I GTNNAC 1 cut(s) 204
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 2 cut(s) 376, 432
HpyCH4V TGCA 6 cut(s) 59, 356, 532, 653, 659, 743
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 503, 793
HpySE526I ACGT 2 cut(s) 376, 432
Hsp92II CATG 6 cut(s) 59, 116, 653, 659, 683, 709
Kpn2I TCCGGA 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 5 cut(s) 256, 408, 453, 509, 638
LpnPI CCDG 8 cut(s) 120, 233, 247, 325, 455, 569, 579, 795
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 173
MaeI CTAG 2 cut(s) 320, 614
MaeII ACGT 2 cut(s) 376, 432
MaeIII GTNAC 2 cut(s) 428, 708
MalI GATC 5 cut(s) 258, 410, 455, 511, 640
MboI GATC 5 cut(s) 256, 408, 453, 509, 638
MboII GAAGA 3 cut(s) 17, 95, 392
MflI RGATCY 3 cut(s) 408, 509, 638
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 4 cut(s) 144, 217, 388, 667
MnlI CCTC 5 cut(s) 70, 255, 571, 596, 616
Mph1103I ATGCAT 1 cut(s) 661
MroI TCCGGA 1 cut(s) 106
MseI TTAA 4 cut(s) 29, 312, 450, 662
MslI CAYNNNNRTG 2 cut(s) 537, 654
MspI CCGG 2 cut(s) 107, 782
Mva1269I GAATGC 1 cut(s) 593
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeI CATATG 1 cut(s) 534
NdeII GATC 5 cut(s) 256, 408, 453, 509, 638
NlaIII CATG 6 cut(s) 59, 116, 653, 659, 683, 709
NlaIV GGNNCC 1 cut(s) 685
NmeAIII GCCGAG 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 708
NsiI ATGCAT 1 cut(s) 661
NspI RCATGY 2 cut(s) 659, 709
PaqCI CACCTGC 1 cut(s) 574
PctI GAATGC 1 cut(s) 593
PfeI GAWTC 1 cut(s) 733
PkrI GCNGC 1 cut(s) 70
PmaCI CACGTG 1 cut(s) 377
PmlI CACGTG 1 cut(s) 377
Ppu21I YACGTR 1 cut(s) 377
Psp1406I AACGTT 1 cut(s) 432
PspCI CACGTG 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 685
PspPI GGNCC 2 cut(s) 109, 684
PsuI RGATCY 3 cut(s) 408, 509, 638
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 537, 654
SaqAI TTAA 4 cut(s) 29, 312, 450, 662
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 5 cut(s) 256, 408, 453, 509, 638
Sau96I GGNCC 2 cut(s) 109, 684
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 2 cut(s) 109, 684
SmiMI CAYNNNNRTG 2 cut(s) 537, 654
Sse9I AATT 4 cut(s) 144, 217, 388, 667
SsiI CCGC 1 cut(s) 479
SspI AATATT 1 cut(s) 547
SspMI CTAG 2 cut(s) 320, 614
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 2 cut(s) 379, 435
TasI AATT 4 cut(s) 144, 217, 388, 667
TfiI GAWTC 1 cut(s) 733
Tru1I TTAA 4 cut(s) 29, 312, 450, 662
Tru9I TTAA 4 cut(s) 29, 312, 450, 662
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 1 cut(s) 708
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 5 cut(s) 123, 290, 320, 638, 754
TspGWI ACGGA 2 cut(s) 198, 676
TspRI CASTG 1 cut(s) 344
VpaK11BI GGWCC 2 cut(s) 109, 684
XapI RAATTY 2 cut(s) 217, 388
XceI RCATGY 2 cut(s) 659, 709
XspI CTAG 2 cut(s) 320, 614
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.