RLG00000023943

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000155
Physical Location & Seq
Reverse (-)
30307052 .. 30309005
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023943

Sequence Viewer

Length: 774 bp
ATGGAAGACAGGGGGAAGCGTAAGTTATTGGCTACTACTGCAAGTCGTCAAGGCCAAGCAGTTAGAGCTGCTACGGAGGGTTTGATTGATAGGCTGAGTAATCTTCCGGACCATGTGGCTCATCACATTCTTTCGTTCCTTGCTATTAAAGACCTTACTTGTTTCGGCTGTGTGTCCAAAAGATGCCGAGAATTTTATCTGTCAACTCCGTCATTGAATTTTGATGGGTTTTCCTGGAAGGACTTACGGACTTATGATAAGAGGTTGAGGTTGTGGAGTTACTTGGATAGGTACTTGTTTCATCGTGGGGTTCTGTTCAAGGGAGGTTCCATGCCATTGCTAAAGAATGTTTGTTATTTGTGTATTCATATTGAAGGCTTTCTTGATAATCTAGTCCCTGCAATGACCTCTCTTTTGGGAGGAATGTCTAAGTTGAGTACATTAATCATAAAGTCTGACTCATTCTTCTGCGGCCCTAAAGCTGATTGTCGTGGGTTTAATATGGGATACTGGAAGCTGCAAAACACTGCTTTTATTTATCAGCTCAAGGAGGTTACCGTAGAGCTTACCCATGGGTCTAATGGAATCGAGTTTGCAAGATATATCCTTGAACACGCTCAGAATTTGAATAAAATGACACTTGTGCATCCACCACAGCTGTCTAATGCAATGAGGAAGTTAAAGAAAAGCAAGATGGCTTCCAACATCACACTGGACTTTCAGGAAGATCAAGAAAGCGGACCTCAGAAACGAAGAAGAAGAAGGGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

258

Amino Acids

29.46

Weight (kDa)

9.7

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 32 - 64 2.2e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 2 cut(s) 471, 738
AcsI RAATTY 3 cut(s) 191, 217, 622
AfaI GTAC 2 cut(s) 293, 439
AgsI TTSAA 5 cut(s) 217, 319, 374, 611, 628
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 6 cut(s) 68, 482, 517, 544, 565, 658
AluI AGCT 6 cut(s) 68, 482, 517, 544, 565, 658
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 2 cut(s) 52, 472
ApeKI GCWGC 2 cut(s) 68, 517
ApoI RAATTY 3 cut(s) 191, 217, 622
ArsI GACNNNNNNTTYG 2 cut(s) 397, 429
AseI ATTAAT 1 cut(s) 443
Asp700I GAANNNNTTC 1 cut(s) 378
AspS9I GGNCC 3 cut(s) 109, 473, 740
AvaII GGWCC 2 cut(s) 109, 740
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 55, 504
BccI CCATC 2 cut(s) 218, 688
BciT130I CCWGG 1 cut(s) 235
BciVI GTATCC 1 cut(s) 500
BfaI CTAG 1 cut(s) 392
BfuI GTATCC 1 cut(s) 500
BisI GCNGC 3 cut(s) 69, 472, 518
BlsI GCNGC 3 cut(s) 70, 473, 519
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 2 cut(s) 109, 740
BmgT120I GGNCC 3 cut(s) 109, 473, 740
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 2 cut(s) 173, 655
BpiI GAAGAC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 571
BsaWI WCCGGW 1 cut(s) 106
Bse1I ACTGG 2 cut(s) 515, 717
Bse3DI GCAATG 3 cut(s) 335, 408, 675
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 571
BseGI GGATG 1 cut(s) 646
BseMI GCAATG 3 cut(s) 335, 408, 675
BseMII CTCAG 3 cut(s) 86, 632, 758
BseNI ACTGG 2 cut(s) 515, 717
BseXI GCAGC 2 cut(s) 55, 504
BshFI GGCC 2 cut(s) 54, 474
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 2 cut(s) 54, 474
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 727
Bsp19I CCATGG 1 cut(s) 571
BspACI CCGC 2 cut(s) 471, 738
BspANI GGCC 2 cut(s) 54, 474
BspCNI CTCAG 3 cut(s) 87, 631, 757
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 328
BsrDI GCAATG 3 cut(s) 335, 408, 675
BsrI ACTGG 2 cut(s) 515, 717
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 1 cut(s) 727
BssT1I CCWWGG 1 cut(s) 571
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 559
BstDEI CTNAG 4 cut(s) 95, 429, 618, 744
BstDSI CCRYGG 1 cut(s) 571
BstEII GGTNACC 1 cut(s) 553
BstF5I GGATG 1 cut(s) 646
BstKTI GATC 1 cut(s) 730
BstMBI GATC 1 cut(s) 727
BstMWI GCNNNNNNNGC 2 cut(s) 38, 65
BstNI CCWGG 1 cut(s) 235
BstPI GGTNACC 1 cut(s) 553
BstSCI CCNGG 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 55, 504
BstV2I GAAGAC 1 cut(s) 12
BsuI GTATCC 1 cut(s) 500
BsuRI GGCC 2 cut(s) 54, 474
BtgI CCRYGG 1 cut(s) 571
BtsCI GGATG 1 cut(s) 646
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 2 cut(s) 525, 710
Cfr13I GGNCC 3 cut(s) 109, 473, 740
Csp6I GTAC 2 cut(s) 292, 438
CviAII CATG 3 cut(s) 113, 331, 572
CviQI GTAC 2 cut(s) 292, 438
DdeI CTNAG 4 cut(s) 95, 429, 618, 744
DpnI GATC 1 cut(s) 729
DpnII GATC 1 cut(s) 727
Eco130I CCWWGG 1 cut(s) 571
Eco47I GGWCC 2 cut(s) 109, 740
Eco91I GGTNACC 1 cut(s) 553
EcoO65I GGTNACC 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 571
FaeI CATG 3 cut(s) 116, 334, 575
FaiI YATR 8 cut(s) 114, 255, 332, 369, 449, 503, 573, 603
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FaqI GGGAC 1 cut(s) 380
FatI CATG 3 cut(s) 112, 330, 571
Fnu4HI GCNGC 3 cut(s) 69, 472, 518
FokI GGATG 1 cut(s) 633
Fsp4HI GCNGC 3 cut(s) 69, 472, 518
FspBI CTAG 1 cut(s) 392
GluI GCNGC 3 cut(s) 69, 472, 518
HaeIII GGCC 2 cut(s) 54, 474
HapII CCGG 1 cut(s) 107
Hin1II CATG 3 cut(s) 116, 334, 575
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 2 cut(s) 458, 585
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 4 cut(s) 457, 621, 747, 773
Hpy188III TCNNGA 4 cut(s) 107, 383, 722, 731
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 3 cut(s) 232, 368, 756
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4V TGCA 6 cut(s) 41, 401, 520, 596, 646, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 65
HpyF3I CTNAG 4 cut(s) 95, 429, 618, 744
Hsp92II CATG 3 cut(s) 116, 334, 575
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 727
LpnPI CCDG 7 cut(s) 120, 220, 247, 411, 496, 698, 707
Lsp1109I GCAGC 2 cut(s) 55, 504
LweI GCATC 2 cut(s) 173, 655
MaeI CTAG 1 cut(s) 392
MaeIII GTNAC 2 cut(s) 278, 553
MalI GATC 1 cut(s) 729
MboI GATC 1 cut(s) 727
MboII GAAGA 7 cut(s) 17, 95, 457, 737, 765, 768, 771
MluCI AATT 3 cut(s) 191, 217, 622
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 1 cut(s) 726
MnlI CCTC 9 cut(s) 70, 255, 261, 317, 413, 418, 544, 666, 753
MroI TCCGGA 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 4 cut(s) 147, 443, 498, 680
MspA1I CMGCKG 1 cut(s) 658
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 38, 65
NcoI CCATGG 1 cut(s) 571
NdeII GATC 1 cut(s) 727
NlaIII CATG 3 cut(s) 116, 334, 575
NlaIV GGNNCC 1 cut(s) 328
NmeAIII GCCGAG 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 585
PfoI TCCNGGA 1 cut(s) 233
PkrI GCNGC 3 cut(s) 70, 473, 519
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
PshBI ATTAAT 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 233
PspEI GGTNACC 1 cut(s) 553
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 3 cut(s) 109, 473, 740
PvuII CAGCTG 1 cut(s) 658
RsaI GTAC 2 cut(s) 293, 439
RsaNI GTAC 2 cut(s) 292, 438
SaqAI TTAA 4 cut(s) 147, 443, 498, 680
SatI GCNGC 3 cut(s) 69, 472, 518
Sau3AI GATC 1 cut(s) 727
Sau96I GGNCC 3 cut(s) 109, 473, 740
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 1 cut(s) 235
SfaNI GCATC 2 cut(s) 173, 655
SinI GGWCC 2 cut(s) 109, 740
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 3 cut(s) 191, 217, 622
SsiI CCGC 2 cut(s) 471, 738
SspMI CTAG 1 cut(s) 392
StyD4I CCNGG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 1 cut(s) 559
TaqI TCGA 1 cut(s) 588
TasI AATT 3 cut(s) 191, 217, 622
TatI WGTACW 1 cut(s) 437
TauI GCSGC 1 cut(s) 474
TfiI GAWTC 1 cut(s) 585
Tru1I TTAA 4 cut(s) 147, 443, 498, 680
Tru9I TTAA 4 cut(s) 147, 443, 498, 680
TscAI CASTG 2 cut(s) 532, 717
TseI GCWGC 2 cut(s) 68, 517
TspDTI ATGAA 2 cut(s) 290, 356
TspGWI ACGGA 3 cut(s) 89, 198, 262
TspRI CASTG 2 cut(s) 532, 717
VpaK11BI GGWCC 2 cut(s) 109, 740
VspI ATTAAT 1 cut(s) 443
XapI RAATTY 3 cut(s) 191, 217, 622
XcmI CCANNNNNNNNNTGG 2 cut(s) 578, 709
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.