Rmu_sc0000076.1_g000032

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000076.1
OG0000155
Physical Location & Seq
Reverse (-)
152830 .. 153471
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000076.1_g000032.1.cds

Sequence Viewer

Length: 642 bp
atggagcataagaataagtcattggcaactgcaacttctcaaggtcaaggagcatctgctgaccccatggtagacagattgagtagtgttccatgtgaagttgctcaccatattctttcatctgtcagttttaaagatctcactcgtttgggcagcatgtccaaaaaatgcagagagtttcatctatcaactccatcattgaatttttcttccttgtatggaaacaggcagcagcaattgaacttgttgaattgtatagataggtatatgattcgtcgcagggaggataagataaagagcttttgtattaaatgggatttctctgcaggaatttcagaagagagtttccggatgatgacttggatccttattgcagtgaggtgcaatgttgaagggcttgatcttgagttgaggttgaatacaaaagatggggcaacacttgaattgccatcttgcatctattgttgtgaatctttgagatctctgttgatcaacacagagacaattcttaaagcaccctcctttgcttgttccaataatctccagtacttgaaattgactagtgttagaatggatgaagggtttggcaaatggatctcgtgcttatgcaaatgcattaaggaactattgttagagtgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

213

Amino Acids

24.14

Weight (kDa)

8.4

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 72
AccIII TCCGGA 1 cut(s) 348
AclWI GGATC 3 cut(s) 358, 371, 602
AcsI RAATTY 2 cut(s) 202, 330
AfaI GTAC 1 cut(s) 548
AgsI TTSAA 7 cut(s) 202, 241, 250, 392, 418, 443, 553
AhlI ACTAGT 1 cut(s) 560
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 3 cut(s) 358, 371, 602
Aor13HI TCCGGA 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 153, 229, 232
ApoI RAATTY 2 cut(s) 202, 330
AsuHPI GGTGA 1 cut(s) 98
BamHI GGATCC 1 cut(s) 363
BauI CACGAG 1 cut(s) 598
BbvI GCAGC 3 cut(s) 165, 241, 244
BccI CCATC 3 cut(s) 202, 422, 457
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 494
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 324
BglII AGATCT 2 cut(s) 136, 479
BisI GCNGC 3 cut(s) 154, 230, 233
BlsI GCNGC 3 cut(s) 155, 231, 234
BmcAI AGTACT 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 365
BmsI GCATC 2 cut(s) 62, 465
BpmI CTGGAG 1 cut(s) 527
BpuEI CTTGAG 2 cut(s) 24, 425
BsaJI CCNNGG 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 391
BseAI TCCGGA 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 357, 580
BseMI GCAATG 1 cut(s) 391
BseNI ACTGG 1 cut(s) 544
BseXI GCAGC 3 cut(s) 165, 241, 244
BsiSI CCGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 494
Bsp13I TCCGGA 1 cut(s) 348
Bsp143I GATC 6 cut(s) 136, 363, 400, 479, 489, 594
Bsp19I CCATGG 1 cut(s) 66
BspEI TCCGGA 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 365
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 3 cut(s) 358, 371, 602
BsrDI GCAATG 1 cut(s) 391
BsrI ACTGG 1 cut(s) 544
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 6 cut(s) 136, 363, 400, 479, 489, 594
BssSI CACGAG 1 cut(s) 598
BssT1I CCWWGG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 598
Bst6I CTCTTC 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 357, 580
BstKTI GATC 6 cut(s) 139, 366, 403, 482, 492, 597
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 6 cut(s) 136, 363, 400, 479, 489, 594
BstNSI RCATGY 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 165, 241, 244
BstX2I RGATCY 4 cut(s) 136, 363, 479, 594
BstYI RGATCY 4 cut(s) 136, 363, 479, 594
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 357, 580
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
Csp6I GTAC 1 cut(s) 547
CviAII CATG 3 cut(s) 67, 93, 157
CviJI RGCY 2 cut(s) 300, 397
CviKI_1 RGCY 2 cut(s) 300, 397
CviQI GTAC 1 cut(s) 547
DpnI GATC 6 cut(s) 138, 365, 402, 481, 491, 596
DpnII GATC 6 cut(s) 136, 363, 400, 479, 489, 594
DraI TTTAAA 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 617
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 3 cut(s) 70, 96, 160
FatI CATG 3 cut(s) 66, 92, 156
FbaI TGATCA 1 cut(s) 489
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 154, 230, 233
FokI GGATG 2 cut(s) 364, 587
Fsp4HI GCNGC 3 cut(s) 154, 230, 233
FspBI CTAG 1 cut(s) 561
GluI GCNGC 3 cut(s) 154, 230, 233
GsuI CTGGAG 1 cut(s) 527
HapII CCGG 1 cut(s) 349
Hin1II CATG 3 cut(s) 70, 96, 160
HinfI GANTC 2 cut(s) 271, 470
HpaII CCGG 1 cut(s) 349
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 2 cut(s) 349, 404
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 2 cut(s) 386, 572
HpyCH4V TGCA 8 cut(s) 32, 171, 326, 374, 384, 456, 609, 615
Hsp92II CATG 3 cut(s) 70, 96, 160
Kpn2I TCCGGA 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 6 cut(s) 136, 363, 400, 479, 489, 594
LmnI GCTCC 2 cut(s) 4, 50
LpnPI CCDG 5 cut(s) 211, 265, 312, 362, 557
Lsp1109I GCAGC 3 cut(s) 165, 241, 244
LweI GCATC 2 cut(s) 62, 465
MaeI CTAG 1 cut(s) 561
MalI GATC 6 cut(s) 138, 365, 402, 481, 491, 596
MboI GATC 6 cut(s) 136, 363, 400, 479, 489, 594
MboII GAAGA 2 cut(s) 201, 350
MfeI CAATTG 1 cut(s) 236
MflI RGATCY 4 cut(s) 136, 363, 479, 594
MluCI AATT 7 cut(s) 202, 236, 250, 330, 443, 504, 554
MnlI CCTC 4 cut(s) 277, 372, 405, 529
Mph1103I ATGCAT 1 cut(s) 617
MroI TCCGGA 1 cut(s) 348
MseI TTAA 4 cut(s) 132, 309, 510, 618
MspI CCGG 1 cut(s) 349
MunI CAATTG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 66
NdeII GATC 6 cut(s) 136, 363, 400, 479, 489, 594
NlaIII CATG 3 cut(s) 70, 96, 160
NlaIV GGNNCC 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 617
NspI RCATGY 1 cut(s) 160
PfeI GAWTC 2 cut(s) 271, 470
PkrI GCNGC 3 cut(s) 155, 231, 234
PspN4I GGNNCC 1 cut(s) 365
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 4 cut(s) 136, 363, 479, 594
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
SaqAI TTAA 4 cut(s) 132, 309, 510, 618
SatI GCNGC 3 cut(s) 154, 230, 233
Sau3AI GATC 6 cut(s) 136, 363, 400, 479, 489, 594
ScaI AGTACT 1 cut(s) 548
SetI ASST 5 cut(s) 46, 266, 302, 383, 416
SfaNI GCATC 2 cut(s) 62, 465
SfcI CTRYAG 1 cut(s) 324
SmlI CTYRAG 2 cut(s) 39, 404
SmoI CTYRAG 2 cut(s) 39, 404
SpeI ACTAGT 1 cut(s) 560
Sse9I AATT 7 cut(s) 202, 236, 250, 330, 443, 504, 554
SspMI CTAG 1 cut(s) 561
StyI CCWWGG 1 cut(s) 66
TasI AATT 7 cut(s) 202, 236, 250, 330, 443, 504, 554
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 2 cut(s) 271, 470
Tru1I TTAA 4 cut(s) 132, 309, 510, 618
Tru9I TTAA 4 cut(s) 132, 309, 510, 618
TscAI CASTG 1 cut(s) 381
TseI GCWGC 3 cut(s) 153, 229, 232
TspDTI ATGAA 3 cut(s) 108, 170, 591
TspRI CASTG 1 cut(s) 381
XapI RAATTY 2 cut(s) 202, 330
XceI RCATGY 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 1 cut(s) 561
ZrmI AGTACT 1 cut(s) 548
Zsp2I ATGCAT 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.