RLG00000023945

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000155
Physical Location & Seq
Reverse (-)
30327099 .. 30332328
5230 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023945

Sequence Viewer

Length: 750 bp
ATGGAAGACAGGGGGAAGCGTAAGTTGTTGGCCACTGCAAGTTGTCAAGGCCAAGCAGTTAGAGCTGTTACCGAGGGTTTGATTGATAGGCTGAGTAATCTTCCAGACCATGTTGCTCATCACATTCTGTCATTCCTTGCTATTGAAGACCTTACTCGTTTCGGATGTGTGTCCAAAGGATGTGGTGAATTGTATTTGTCAGCTCCGTCGTTGAATTTTAAGGGATTTTCCTGCAAGAACTTGGTGACTTATGATAAGAGGTTGAGGTTGTGGAGTTATTTGGATAGGTACTTGTTTCATCGTGGGGCTCTGCTAAAGGGAGGTTCCATGCCATTGCTAAAGAATGTTTGTTATTTGAGTATTCATATTGAAGGCTTTCTAGATATTCTAGTCCCTGCAATGACCTCTCTTTTGGGAGGAATGTCTAAGTTAAGTACGTTGATCATAAAGTCTAATTCATTCTTCCGTGGTCCTAAAGCTGATTGTTGTGGGTTTAATATGGGATACTGGAAGCTGCAAAACACTGCTTTTATTTATCAGCTTAAGGAGGTTACCATAGAGCTTTCCCATGGGTCTAATGGAATCGAGTTTGCTAGATATATACTTGACCATGCTCAGAATTTGAATAAAATGACGATTGTGCATTCACCACAGCAGTCTAAAGCTATGAGTAAGTTAAAGAAAAGCAAGATGGCTTCCAACATCACACTTGACTTTCAGGAAGATGAAAAAAGAGCACCTCCGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

250

Amino Acids

27.93

Weight (kDa)

9.27

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 31 - 61 6e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 742
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 2 cut(s) 214, 619
AfaI GTAC 2 cut(s) 290, 436
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 4 cut(s) 146, 214, 371, 625
AluBI AGCT 7 cut(s) 65, 203, 479, 514, 541, 562, 665
AluI AGCT 7 cut(s) 65, 203, 479, 514, 541, 562, 665
Alw21I GWGCWC 1 cut(s) 739
Aor13HI TCCGGA 1 cut(s) 742
AoxI GGCC 2 cut(s) 30, 49
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 2 cut(s) 214, 619
ArsI GACNNNNNNTTYG 2 cut(s) 394, 426
Asp700I GAANNNNTTC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 3 cut(s) 197, 256, 639
AvaII GGWCC 1 cut(s) 470
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 310
BbsI GAAGAC 2 cut(s) 12, 153
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 1 cut(s) 501
BccI CCATC 1 cut(s) 685
BciVI GTATCC 1 cut(s) 497
BclI TGATCA 1 cut(s) 441
BfaI CTAG 3 cut(s) 380, 389, 594
BfrI CTTAAG 1 cut(s) 542
BfuI GTATCC 1 cut(s) 497
BisI GCNGC 1 cut(s) 515
BlsI GCNGC 1 cut(s) 516
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 1 cut(s) 325
BpiI GAAGAC 2 cut(s) 12, 153
BsaJI CCNNGG 3 cut(s) 72, 466, 568
BsaWI WCCGGW 1 cut(s) 742
Bse1I ACTGG 1 cut(s) 512
Bse3DI GCAATG 2 cut(s) 332, 405
BseAI TCCGGA 1 cut(s) 742
BseDI CCNNGG 3 cut(s) 72, 466, 568
BseGI GGATG 2 cut(s) 170, 185
BseMI GCAATG 2 cut(s) 332, 405
BseMII CTCAG 2 cut(s) 83, 629
BseNI ACTGG 1 cut(s) 512
BseXI GCAGC 1 cut(s) 501
BshFI GGCC 2 cut(s) 32, 51
BsiHKAI GWGCWC 1 cut(s) 739
BsiSI CCGG 1 cut(s) 743
BslFI GGGAC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 2 cut(s) 32, 51
Bsp1286I GDGCHC 2 cut(s) 310, 739
Bsp13I TCCGGA 1 cut(s) 742
Bsp143I GATC 1 cut(s) 441
Bsp19I CCATGG 1 cut(s) 568
BspANI GGCC 2 cut(s) 32, 51
BspCNI CTCAG 2 cut(s) 84, 628
BspEI TCCGGA 1 cut(s) 742
BspLI GGNNCC 1 cut(s) 325
BspTI CTTAAG 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 332, 405
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 3 cut(s) 72, 466, 568
BssMI GATC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 568
BstAFI CTTAAG 1 cut(s) 542
BstDEI CTNAG 3 cut(s) 92, 426, 615
BstDSI CCRYGG 2 cut(s) 466, 568
BstEII GGTNACC 1 cut(s) 550
BstF5I GGATG 2 cut(s) 170, 185
BstKTI GATC 1 cut(s) 444
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstPI GGTNACC 1 cut(s) 550
BstV1I GCAGC 1 cut(s) 501
BstV2I GAAGAC 2 cut(s) 12, 153
BsuI GTATCC 1 cut(s) 497
BsuRI GGCC 2 cut(s) 32, 51
BtgI CCRYGG 2 cut(s) 466, 568
BtsCI GGATG 2 cut(s) 170, 185
BtsI GCAGTG 2 cut(s) 33, 522
BtsIMutI CAGTG 2 cut(s) 33, 522
Cfr13I GGNCC 1 cut(s) 470
Csp6I GTAC 2 cut(s) 289, 435
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 4 cut(s) 110, 328, 569, 611
CviQI GTAC 2 cut(s) 289, 435
DdeI CTNAG 3 cut(s) 92, 426, 615
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 470
Eco91I GGTNACC 1 cut(s) 550
EcoO65I GGTNACC 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 4 cut(s) 113, 331, 572, 614
FaqI GGGAC 1 cut(s) 377
FatI CATG 4 cut(s) 109, 327, 568, 610
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 1 cut(s) 515
FokI GGATG 2 cut(s) 177, 192
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 515
FspBI CTAG 3 cut(s) 380, 389, 594
GluI GCNGC 1 cut(s) 515
HaeIII GGCC 2 cut(s) 32, 51
HapII CCGG 1 cut(s) 743
Hin1II CATG 4 cut(s) 113, 331, 572, 614
HinfI GANTC 1 cut(s) 582
HpaII CCGG 1 cut(s) 743
HphI GGTGA 3 cut(s) 197, 256, 639
Hpy188I TCNGA 2 cut(s) 164, 618
Hpy188III TCNNGA 4 cut(s) 104, 380, 719, 743
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 5 cut(s) 38, 234, 398, 517, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 3 cut(s) 92, 426, 615
HpySE526I ACGT 1 cut(s) 437
Hsp92II CATG 4 cut(s) 113, 331, 572, 614
Kpn2I TCCGGA 1 cut(s) 742
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 5 cut(s) 117, 244, 408, 493, 704
Lsp1109I GCAGC 1 cut(s) 501
MaeI CTAG 3 cut(s) 380, 389, 594
MaeII ACGT 1 cut(s) 437
MaeIII GTNAC 3 cut(s) 67, 244, 550
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 5 cut(s) 17, 92, 158, 454, 734
MhlI GDGCHC 2 cut(s) 310, 739
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 4 cut(s) 188, 214, 454, 619
MluNI TGGCCA 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 723
MnlI CCTC 8 cut(s) 67, 252, 258, 314, 410, 415, 541, 750
Mox20I TGGCCA 1 cut(s) 32
MroI TCCGGA 1 cut(s) 742
MroXI GAANNNNTTC 1 cut(s) 375
MscI TGGCCA 1 cut(s) 32
MseI TTAA 5 cut(s) 219, 431, 495, 543, 677
Msp20I TGGCCA 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 1 cut(s) 743
Mva1269I GAATGC 1 cut(s) 643
MwoI GCNNNNNNNGC 1 cut(s) 62
NcoI CCATGG 1 cut(s) 568
NdeII GATC 1 cut(s) 441
NlaIII CATG 4 cut(s) 113, 331, 572, 614
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 244
PctI GAATGC 1 cut(s) 643
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 1 cut(s) 582
PkrI GCNGC 1 cut(s) 516
PspEI GGTNACC 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 1 cut(s) 470
RsaI GTAC 2 cut(s) 290, 436
RsaNI GTAC 2 cut(s) 289, 435
SaqAI TTAA 5 cut(s) 219, 431, 495, 543, 677
SatI GCNGC 1 cut(s) 515
Sau3AI GATC 1 cut(s) 441
Sau96I GGNCC 1 cut(s) 470
SduI GDGCHC 2 cut(s) 310, 739
SinI GGWCC 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 4 cut(s) 188, 214, 454, 619
SspMI CTAG 3 cut(s) 380, 389, 594
StyI CCWWGG 1 cut(s) 568
TaiI ACGT 1 cut(s) 440
TaqI TCGA 1 cut(s) 585
TasI AATT 4 cut(s) 188, 214, 454, 619
TfiI GAWTC 1 cut(s) 582
Tru1I TTAA 5 cut(s) 219, 431, 495, 543, 677
Tru9I TTAA 5 cut(s) 219, 431, 495, 543, 677
TscAI CASTG 2 cut(s) 40, 529
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 514
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 287, 353, 447, 741
TspGWI ACGGA 2 cut(s) 195, 455
TspRI CASTG 2 cut(s) 40, 529
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 2 cut(s) 214, 619
XbaI TCTAGA 1 cut(s) 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 3 cut(s) 380, 389, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.