RLG00000002499

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000155
Physical Location & Seq
Forward (+)
35298552 .. 35300631
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002499

Sequence Viewer

Length: 651 bp
ATGGAAAACAAGCATAAGTTATTGGCAACTGCAAGTTCTCAAGATCAAGGAGTGTGTCATGATACTATAAGAGATAGATTCAGTACTCTTCCGGATGAAATTGCTCATCATATACTCTCAATGGTGGATTTAAGAGATCTCACTCGTGTAGGTGCCGTGTCCAAGAGATGCTATGAGTTTTATCTCTCAACTCCATCATTCTGCTTTGACGCGCATTATGGTAACATGCAGTGCAAATCAAACAAGATGAATTGTTTCGATGAGTTCTTGCGTCGTCGTGGGAATAATAAGATACATCATTTTGGTATTGATTTGAGTTTACCGGCAAGCCTCACCTGCAAGGCTTTGTTCAGGGAAGGTTCCATGGCTGCACCTATCTTTGATACTTCTTACTTGCGTATAAATATTGCGAACCTGAACAACGCTCTAGTCCCAGGAATGGTCTCTCTTATGAGAGGAATGTCAAATTTGAATACTTTGGACATAAAGTCTGACCCTTCCTTATTCTTCCTCGAACCGAAAGCATGTGGATTTAATGGGAAATACTGGAAATCCCAAAACCTGGATTTTGTAAACCAGCTTAAGGAGGTAAGTAACAGCAAGAAGGTCTCCTCTGCCACAATTGACTTTCATGAGAAACAATGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBD

Protein Analysis

217

Amino Acids

24.6

Weight (kDa)

8.82

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 27 - 59 3.4e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 562
AccII CGCG 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 91
AcsI RAATTY 1 cut(s) 466
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 3 cut(s) 439, 562, 583
AflII CTTAAG 1 cut(s) 581
AgsI TTSAA 1 cut(s) 472
AhdI GACNNNNNGTC 1 cut(s) 487
AjnI CCWGG 2 cut(s) 433, 561
AluBI AGCT 1 cut(s) 580
AluI AGCT 1 cut(s) 580
Alw26I GTCTC 2 cut(s) 448, 613
Aor13HI TCCGGA 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 466
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 325
BanI GGYRCC 1 cut(s) 152
BauI CACGAG 1 cut(s) 144
BbvI GCAGC 1 cut(s) 355
BccI CCATC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 2 cut(s) 435, 563
BcoDI GTCTC 2 cut(s) 448, 613
BfaI CTAG 1 cut(s) 428
BfrI CTTAAG 1 cut(s) 581
BfuAI ACCTGC 1 cut(s) 344
BglII AGATCT 1 cut(s) 136
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 435, 563
BmeRI GACNNNNNGTC 1 cut(s) 487
BmiI GGNNCC 2 cut(s) 154, 361
BmrFI CCNGG 2 cut(s) 435, 563
BmsI GCATC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 24
BsaI GGTCTC 2 cut(s) 448, 613
BsaJI CCNNGG 2 cut(s) 363, 433
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 3 cut(s) 439, 562, 583
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 551
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 2 cut(s) 435, 563
BseDI CCNNGG 2 cut(s) 363, 433
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 3 cut(s) 439, 562, 583
BseNI ACTGG 1 cut(s) 551
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 354
Bsh1236I CGCG 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 152
BsiSI CCGG 2 cut(s) 92, 323
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 3 cut(s) 439, 562, 583
BsmAI GTCTC 2 cut(s) 448, 613
BsmFI GGGAC 1 cut(s) 416
Bso31I GGTCTC 2 cut(s) 448, 613
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 2 cut(s) 43, 136
Bsp19I CCATGG 1 cut(s) 363
BspEI TCCGGA 1 cut(s) 91
BspFNI CGCG 1 cut(s) 212
BspHI TCATGA 2 cut(s) 58, 631
BspLI GGNNCC 2 cut(s) 154, 361
BspMI ACCTGC 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 581
BspTNI GGTCTC 2 cut(s) 448, 613
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 1 cut(s) 551
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 363, 433
BssMI GATC 2 cut(s) 43, 136
BssSI CACGAG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 363
Bst2BI CACGAG 1 cut(s) 144
Bst2UI CCWGG 2 cut(s) 435, 563
Bst6I CTCTTC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 328
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 212
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 2 cut(s) 46, 139
BstMAI GTCTC 2 cut(s) 448, 613
BstMBI GATC 2 cut(s) 43, 136
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 2 cut(s) 435, 563
BstNSI RCATGY 2 cut(s) 229, 528
BstSCI CCNGG 2 cut(s) 433, 561
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 236
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 328
CciI TCATGA 2 cut(s) 58, 631
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 322
CseI GACGC 2 cut(s) 218, 260
Csp6I GTAC 1 cut(s) 84
CviAII CATG 5 cut(s) 59, 226, 364, 525, 632
CviJI RGCY 4 cut(s) 330, 344, 368, 580
CviKI_1 RGCY 4 cut(s) 330, 344, 368, 580
CviQI GTAC 1 cut(s) 84
DpnI GATC 2 cut(s) 45, 138
DpnII GATC 2 cut(s) 43, 136
DriI GACNNNNNGTC 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 93
Eam1105I GACNNNNNGTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 363
Eco31I GGTCTC 2 cut(s) 448, 613
EcoRII CCWGG 2 cut(s) 433, 561
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 5 cut(s) 62, 229, 367, 528, 635
FaqI GGGAC 1 cut(s) 416
FatI CATG 5 cut(s) 58, 225, 363, 524, 631
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 1 cut(s) 428
GlaI GCGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 369
HapII CCGG 2 cut(s) 92, 323
HgaI GACGC 2 cut(s) 218, 260
HhaI GCGC 1 cut(s) 214
Hin1II CATG 5 cut(s) 62, 229, 367, 528, 635
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 1 cut(s) 78
HpaII CCGG 2 cut(s) 92, 323
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 2 cut(s) 320, 574
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 4 cut(s) 41, 59, 92, 632
Hpy8I GTNNAC 2 cut(s) 320, 574
Hpy99I CGWCG 2 cut(s) 276, 279
HpyAV CCTTC 3 cut(s) 350, 507, 598
HpyCH4V TGCA 5 cut(s) 32, 229, 234, 339, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
Hsp92II CATG 5 cut(s) 62, 229, 367, 528, 635
HspAI GCGC 1 cut(s) 212
Kpn2I TCCGGA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 43, 136
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 1 cut(s) 158
MaeI CTAG 1 cut(s) 428
MaeIII GTNAC 2 cut(s) 221, 593
MalI GATC 2 cut(s) 45, 138
MboI GATC 2 cut(s) 43, 136
MboII GAAGA 2 cut(s) 80, 499
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 1 cut(s) 136
MluCI AATT 4 cut(s) 99, 250, 466, 621
MnlI CCTC 5 cut(s) 341, 449, 521, 580, 622
MroI TCCGGA 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 3 cut(s) 131, 534, 582
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 2 cut(s) 92, 323
MspR9I CCNGG 2 cut(s) 435, 563
MunI CAATTG 1 cut(s) 621
MvaI CCWGG 2 cut(s) 435, 563
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 336
NcoI CCATGG 1 cut(s) 363
NdeII GATC 2 cut(s) 43, 136
NlaIII CATG 5 cut(s) 62, 229, 367, 528, 635
NlaIV GGNNCC 2 cut(s) 154, 361
NspI RCATGY 2 cut(s) 229, 528
PagI TCATGA 2 cut(s) 58, 631
PaqCI CACCTGC 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 78
PflMI CCANNNNNTGG 1 cut(s) 562
PkrI GCNGC 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 433, 561
PspGI CCWGG 2 cut(s) 433, 561
PspN4I GGNNCC 2 cut(s) 154, 361
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SaqAI TTAA 3 cut(s) 131, 534, 582
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 2 cut(s) 43, 136
ScaI AGTACT 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 435, 563
SetI ASST 9 cut(s) 154, 338, 361, 376, 417, 564, 582, 591, 609
SfaNI GCATC 1 cut(s) 158
SmlI CTYRAG 2 cut(s) 39, 581
SmoI CTYRAG 2 cut(s) 39, 581
Sse9I AATT 4 cut(s) 99, 250, 466, 621
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 2 cut(s) 433, 561
StyI CCWWGG 1 cut(s) 363
TaqI TCGA 2 cut(s) 258, 513
TasI AATT 4 cut(s) 99, 250, 466, 621
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 3 cut(s) 131, 534, 582
Tru9I TTAA 3 cut(s) 131, 534, 582
TscAI CASTG 1 cut(s) 236
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 3 cut(s) 111, 263, 620
TspRI CASTG 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 562
Vha464I CTTAAG 1 cut(s) 581
XapI RAATTY 1 cut(s) 466
XceI RCATGY 2 cut(s) 229, 528
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 1 cut(s) 428
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.