Rw7G019470

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
21530701 .. 21531427
727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019470.1

Sequence Viewer

Length: 477 bp
ATGCATGCCCCATTGGATGGTACTATTTACTTGGGTATGCATATTATGAACTTGACTGATGACCTAGTCCCTGCAATGGTATCTCTTCTGAGAGGAATGCCTAATTTGAAGACTTTGTACATCAATTCTTACCCTTCCTTGCACATTGTTAAACCAAAAGCCTGTGGTTTTAAGAAGAAATACTGGAAATCCCAAAATCTGGATTGTATTCATCAGCTTGAGGAGGTATCAGTAGCACTCTCCACTGGTTATCCTACTAATGCCTTGGAGTTAGCAACATATATTCTCGAGCATGCTCTGAAATTGAAGAAAATGGTCATATGTTATTTACCCCACCAGTTCTATATTATAGAGAGGATAAATAAAAGCAAGAAAATTTCCTCTGCAACTGTTGTCTTTAAGAAAAGAGGAGTGAATGACGATGGAGCAATGGGTGAAAGTTATTATGGGAAGCTCTATCACTTGCACCGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

158

Amino Acids

18.05

Weight (kDa)

9.35

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 17, 199
AcsI RAATTY 1 cut(s) 375
AfaI GTAC 2 cut(s) 22, 119
AfiI CCNNNNNNNGG 3 cut(s) 17, 76, 199
AgeI ACCGGT 1 cut(s) 468
AgsI TTSAA 2 cut(s) 109, 307
AluBI AGCT 2 cut(s) 217, 454
AluI AGCT 2 cut(s) 217, 454
Ama87I CYCGRG 1 cut(s) 287
ApoI RAATTY 1 cut(s) 375
AsiGI ACCGGT 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 446
AvaI CYCGRG 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BbsI GAAGAC 1 cut(s) 116
BccI CCATC 2 cut(s) 11, 416
BfaI CTAG 1 cut(s) 65
BmeT110I CYCGRG 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 468
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 76, 199
Bse118I RCCGGY 1 cut(s) 468
Bse1I ACTGG 3 cut(s) 188, 250, 337
Bse3DI GCAATG 2 cut(s) 81, 435
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 3 cut(s) 17, 76, 199
BseMI GCAATG 2 cut(s) 81, 435
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 3 cut(s) 188, 250, 337
BseRI GAGGAG 2 cut(s) 236, 423
BshTI ACCGGT 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 1 cut(s) 469
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 3 cut(s) 17, 76, 199
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 287
Bsp1407I TGTACA 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 81
BsrDI GCAATG 2 cut(s) 81, 435
BsrFI RCCGGY 1 cut(s) 468
BsrGI TGTACA 1 cut(s) 117
BsrI ACTGG 3 cut(s) 188, 250, 337
BssAI RCCGGY 1 cut(s) 468
BssECI CCNNGG 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 6, 294
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 22
BstNSI RCATGY 2 cut(s) 8, 296
BstV2I GAAGAC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 6, 294
Cfr10I RCCGGY 1 cut(s) 468
Csp6I GTAC 2 cut(s) 21, 118
CspAI ACCGGT 1 cut(s) 468
CviAII CATG 2 cut(s) 5, 293
CviJI RGCY 3 cut(s) 161, 217, 454
CviKI_1 RGCY 3 cut(s) 161, 217, 454
CviQI GTAC 2 cut(s) 21, 118
DdeI CTNAG 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 2 cut(s) 6, 42
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 2 cut(s) 8, 296
FaqI GGGAC 1 cut(s) 53
FatI CATG 2 cut(s) 4, 292
FauNDI CATATG 1 cut(s) 320
FokI GGATG 1 cut(s) 29
FspBI CTAG 1 cut(s) 65
HapII CCGG 1 cut(s) 469
Hin1II CATG 2 cut(s) 8, 296
HpaII CCGG 1 cut(s) 469
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 3 cut(s) 90, 300, 476
Hpy188III TCNNGA 2 cut(s) 200, 287
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4V TGCA 6 cut(s) 4, 40, 74, 142, 386, 466
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 2 cut(s) 8, 296
LmnI GCTCC 1 cut(s) 425
LpnPI CCDG 6 cut(s) 84, 169, 175, 185, 231, 350
MaeI CTAG 1 cut(s) 65
MboII GAAGA 4 cut(s) 77, 121, 187, 319
MluCI AATT 4 cut(s) 103, 124, 302, 375
MnlI CCTC 6 cut(s) 86, 214, 217, 348, 391, 401
Mph1103I ATGCAT 2 cut(s) 6, 42
MseI TTAA 3 cut(s) 150, 171, 399
MspI CCGG 1 cut(s) 469
Mva1269I GAATGC 1 cut(s) 102
NdeI CATATG 1 cut(s) 320
NlaIII CATG 2 cut(s) 8, 296
NsiI ATGCAT 2 cut(s) 6, 42
NspI RCATGY 2 cut(s) 8, 296
PaeI GCATGC 2 cut(s) 8, 296
PaeR7I CTCGAG 1 cut(s) 287
PctI GAATGC 1 cut(s) 102
PflFI GACNNNGTC 1 cut(s) 65
PflMI CCANNNNNTGG 2 cut(s) 17, 199
PinAI ACCGGT 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 2 cut(s) 22, 119
RsaNI GTAC 2 cut(s) 21, 118
SaqAI TTAA 3 cut(s) 150, 171, 399
SetI ASST 4 cut(s) 66, 219, 228, 456
Sfr274I CTCGAG 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 218, 287
SmoI CTYRAG 2 cut(s) 218, 287
SphI GCATGC 2 cut(s) 8, 296
Sse9I AATT 4 cut(s) 103, 124, 302, 375
SspMI CTAG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 288
TasI AATT 4 cut(s) 103, 124, 302, 375
TatI WGTACW 1 cut(s) 117
Tru1I TTAA 3 cut(s) 150, 171, 399
Tru9I TTAA 3 cut(s) 150, 171, 399
TscAI CASTG 1 cut(s) 250
TspDTI ATGAA 2 cut(s) 62, 200
TspRI CASTG 1 cut(s) 250
Tth111I GACNNNGTC 1 cut(s) 65
Van91I CCANNNNNTGG 2 cut(s) 17, 199
XapI RAATTY 1 cut(s) 375
XceI RCATGY 2 cut(s) 8, 296
XhoI CTCGAG 1 cut(s) 287
XspI CTAG 1 cut(s) 65
Zsp2I ATGCAT 2 cut(s) 6, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.