RchiOBHm_Chr7g0217281

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000155
Physical Location & Seq
Reverse (-)
35156313 .. 35157416
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19444

Sequence Viewer

Length: 1104 bp
ATGGAAAACGAGCGTAAGTTATTGGCAACTGCATGTTCTCAAGATCAAGGAGTGTGTCATGATACTATAAGAGATAGATTCAGTACTCTTCCGGATGAAATTGCTCATCATATACTCTCAATGGTGGATTTAAGAGATCTCACTCGCGTAGGTGCCTTGTCAAAGGGATGCTATGAGTTTTATCTCTCAACTCCATCATTCTGCTTTGACGCGCATTTTGGTAACATGCAGCGCAAATCAAACAAGATGAATTGTTTCGATCAGTTCTTGCGTCGTCGTGGGAATAATAAGATACATCATTTTGGTATTGATTTGAGTTTACCGGCAAGCCTCTCCTGCAAGGTATTCCAAGTCATGACGTGGATTGATAATGCAGCAAGGTGCAGTGTTGAAGTGCTTAATCTTCAGTTGACTATGAATTCCAAGGGGAATATGGTAGGATTGCCGTCTTCCATATTTCGTTGTGGATCTTTGAGGTCACTAATGGTGAAAATGGAGGAGATTTTCAAAGTTCCATCCTTTCCTTGTCCCAATAATCTCCAACACTTGAACTTGAGCTACGTTAGAATAGATGAGGGGTTTTCCAAATGGATCTCAAGTTCCTGCAAATGCATTAAGGAAATAAAGCTCTTAATGGTTAGCACGGATAATTTAACCATTGAGAACTCATCTTTGGAATCATTTACTTTTGTGGCCTGTTCCGACCTCTGCTGTCTTAACATCTCAGGTGAGAAACTTGAAATTATACATATAAAGTGGAAATTCTTTAACCCAGGCAGCAGATCATTACATATTTGTGCTCCAAATCTAAAATATTTGAAGTGGGTTGGGGATTTGGTGAGTCATCCAAAACTGGAGAAATTATTATGTTTAGAAAAGGCTGAGATTTTTCTGGAGGCCAAGTCAATCTGTGTCTGTGACTTTCACAACGCATTCGAGTTCCTTTGCAGTATTTGCAGGGCTAAAGCACTTATTCTAAGTGACAAGACCATTAAGGTATGCAATGTACTCAGCAAACATATATTCTCCTTTAGCAGAAGCAAGATTATTTTGGAATTAGGAATTTTGCTGATTATATTTATAACTGCTGTACAATTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBD

Protein Analysis

367

Amino Acids

41.73

Weight (kDa)

8.59

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 120 - 276 5.3e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1082
AccB1I GGYRCC 1 cut(s) 152
AccII CGCG 2 cut(s) 147, 212
AccIII TCCGGA 1 cut(s) 91
AclWI GGATC 2 cut(s) 475, 599
AcsI RAATTY 3 cut(s) 418, 761, 1062
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 3 cut(s) 85, 1008, 1092
AgsI TTSAA 5 cut(s) 392, 508, 550, 740, 820
AjiI CACGTC 1 cut(s) 360
AjnI CCWGG 1 cut(s) 772
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AloI GAACNNNNNNTCC 2 cut(s) 583, 615
AluBI AGCT 2 cut(s) 558, 628
AluI AGCT 2 cut(s) 558, 628
Alw21I GWGCWC 1 cut(s) 802
AlwI GGATC 2 cut(s) 475, 599
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 2 cut(s) 693, 897
ApeKI GCWGC 3 cut(s) 229, 374, 777
ApoI RAATTY 3 cut(s) 418, 761, 1062
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 2 cut(s) 214, 234
AsuHPI GGTGA 3 cut(s) 499, 740, 850
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 802
BbvI GCAGC 3 cut(s) 241, 386, 789
BccI CCATC 2 cut(s) 202, 523
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 1 cut(s) 774
BglII AGATCT 1 cut(s) 136
BisI GCNGC 3 cut(s) 230, 375, 778
BlsI GCNGC 3 cut(s) 231, 376, 779
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 774
BmgBI CACGTC 1 cut(s) 360
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 774
BmsI GCATC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 2 cut(s) 875, 914
BpuEI CTTGAG 3 cut(s) 24, 574, 580
BsaJI CCNNGG 2 cut(s) 423, 772
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 858
Bse3DI GCAATG 1 cut(s) 1009
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 1 cut(s) 774
BseDI CCNNGG 2 cut(s) 423, 772
BseGI GGATG 4 cut(s) 100, 173, 515, 844
BseMI GCAATG 1 cut(s) 1009
BseMII CTCAG 3 cut(s) 738, 873, 1024
BseNI ACTGG 1 cut(s) 858
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 3 cut(s) 241, 386, 789
BsgI GTGCAG 1 cut(s) 403
Bsh1236I CGCG 2 cut(s) 147, 212
BshFI GGCC 2 cut(s) 695, 899
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 802
BsiSI CCGG 2 cut(s) 92, 323
BslFI GGGAC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 513
BsmI GAATGC 1 cut(s) 932
BsnI GGCC 2 cut(s) 695, 899
Bsp1286I GDGCHC 1 cut(s) 802
Bsp13I TCCGGA 1 cut(s) 91
Bsp1407I TGTACA 1 cut(s) 1090
Bsp143I GATC 6 cut(s) 43, 136, 259, 467, 591, 782
BspANI GGCC 2 cut(s) 695, 899
BspCNI CTCAG 3 cut(s) 737, 874, 1023
BspEI TCCGGA 1 cut(s) 91
BspFNI CGCG 2 cut(s) 147, 212
BspHI TCATGA 2 cut(s) 58, 354
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 2 cut(s) 475, 599
BspT107I GGYRCC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 1009
BsrFI RCCGGY 1 cut(s) 322
BsrGI TGTACA 1 cut(s) 1090
BsrI ACTGG 1 cut(s) 858
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 423, 772
BssMI GATC 6 cut(s) 43, 136, 259, 467, 591, 782
BssT1I CCWWGG 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 774
Bst6I CTCTTC 1 cut(s) 93
BstAPI GCANNNNNTGC 1 cut(s) 954
BstAUI TGTACA 1 cut(s) 1090
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 4 cut(s) 724, 882, 977, 1010
BstF5I GGATG 4 cut(s) 100, 173, 515, 844
BstFNI CGCG 2 cut(s) 147, 212
BstHHI GCGC 2 cut(s) 214, 234
BstKTI GATC 6 cut(s) 46, 139, 262, 470, 594, 785
BstMBI GATC 6 cut(s) 43, 136, 259, 467, 591, 782
BstMWI GCNNNNNNNGC 2 cut(s) 336, 954
BstNI CCWGG 1 cut(s) 774
BstNSI RCATGY 2 cut(s) 36, 229
BstSCI CCNGG 1 cut(s) 772
BstUI CGCG 2 cut(s) 147, 212
BstV1I GCAGC 3 cut(s) 241, 386, 789
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 3 cut(s) 136, 467, 591
BstYI RGATCY 3 cut(s) 136, 467, 591
BsuRI GGCC 2 cut(s) 695, 899
BtrI CACGTC 1 cut(s) 360
BtsCI GGATG 4 cut(s) 100, 173, 515, 844
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 328
CciI TCATGA 2 cut(s) 58, 354
CfoI GCGC 2 cut(s) 214, 234
Cfr10I RCCGGY 1 cut(s) 322
CseI GACGC 2 cut(s) 218, 260
Csp6I GTAC 3 cut(s) 84, 1007, 1091
CviAII CATG 4 cut(s) 33, 59, 226, 355
CviJI RGCY 7 cut(s) 330, 558, 628, 695, 881, 899, 962
CviKI_1 RGCY 7 cut(s) 330, 558, 628, 695, 881, 899, 962
CviQI GTAC 3 cut(s) 84, 1007, 1091
DdeI CTNAG 4 cut(s) 724, 882, 977, 1010
DpnI GATC 6 cut(s) 45, 138, 261, 469, 593, 784
DpnII GATC 6 cut(s) 43, 136, 259, 467, 591, 782
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 423
Eco57I CTGAAG 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 423
EcoT22I ATGCAT 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 4 cut(s) 36, 62, 229, 358
FaqI GGGAC 1 cut(s) 513
FatI CATG 4 cut(s) 32, 58, 225, 354
Fnu4HI GCNGC 3 cut(s) 230, 375, 778
FokI GGATG 4 cut(s) 107, 180, 502, 831
Fsp4HI GCNGC 3 cut(s) 230, 375, 778
GlaI GCGC 2 cut(s) 213, 233
GluI GCNGC 3 cut(s) 230, 375, 778
GsuI CTGGAG 2 cut(s) 875, 914
HaeIII GGCC 2 cut(s) 695, 899
HapII CCGG 2 cut(s) 92, 323
HgaI GACGC 2 cut(s) 218, 260
HhaI GCGC 2 cut(s) 214, 234
Hin1II CATG 4 cut(s) 36, 62, 229, 358
Hin6I GCGC 2 cut(s) 212, 232
HinP1I GCGC 2 cut(s) 212, 232
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 3 cut(s) 78, 677, 841
HpaII CCGG 2 cut(s) 92, 323
HphI GGTGA 3 cut(s) 499, 740, 850
Hpy166II GTNNAC 2 cut(s) 320, 411
Hpy188I TCNGA 1 cut(s) 703
Hpy188III TCNNGA 5 cut(s) 41, 59, 92, 355, 893
Hpy8I GTNNAC 2 cut(s) 320, 411
Hpy99I CGWCG 2 cut(s) 276, 279
HpyCH4IV ACGT 2 cut(s) 359, 561
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 954
HpyF3I CTNAG 4 cut(s) 724, 882, 977, 1010
HpySE526I ACGT 2 cut(s) 359, 561
Hsp92II CATG 4 cut(s) 36, 62, 229, 358
HspAI GCGC 2 cut(s) 212, 232
Kpn2I TCCGGA 1 cut(s) 91
Kzo9I GATC 6 cut(s) 43, 136, 259, 467, 591, 782
LmnI GCTCC 1 cut(s) 805
Lsp1109I GCAGC 3 cut(s) 241, 386, 789
LweI GCATC 1 cut(s) 158
MaeII ACGT 2 cut(s) 359, 561
MaeIII GTNAC 4 cut(s) 221, 477, 917, 980
MalI GATC 6 cut(s) 45, 138, 261, 469, 593, 784
MboI GATC 6 cut(s) 43, 136, 259, 467, 591, 782
MboII GAAGA 3 cut(s) 80, 395, 441
MflI RGATCY 3 cut(s) 136, 467, 591
MhlI GDGCHC 1 cut(s) 802
MlyI GAGTC 1 cut(s) 850
MmeI TCCRAC 2 cut(s) 565, 726
MnlI CCTC 6 cut(s) 341, 468, 490, 568, 716, 889
Mph1103I ATGCAT 1 cut(s) 614
MroI TCCGGA 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 8 cut(s) 131, 399, 615, 632, 653, 717, 768, 993
MslI CAYNNNNRTG 1 cut(s) 795
MspI CCGG 2 cut(s) 92, 323
MspR9I CCNGG 1 cut(s) 774
Mva1269I GAATGC 1 cut(s) 932
MvaI CCWGG 1 cut(s) 774
MvnI CGCG 2 cut(s) 147, 212
MwoI GCNNNNNNNGC 2 cut(s) 336, 954
NdeII GATC 6 cut(s) 43, 136, 259, 467, 591, 782
NlaIII CATG 4 cut(s) 36, 62, 229, 358
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 3 cut(s) 477, 917, 980
NsiI ATGCAT 1 cut(s) 614
NspI RCATGY 2 cut(s) 36, 229
PagI TCATGA 2 cut(s) 58, 354
PctI GAATGC 1 cut(s) 932
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 78, 677
PkrI GCNGC 3 cut(s) 231, 376, 779
PleI GAGTC 1 cut(s) 849
PpsI GAGTC 1 cut(s) 849
PsiI TTATAA 1 cut(s) 1082
Psp6I CCWGG 1 cut(s) 772
PspGI CCWGG 1 cut(s) 772
PspN4I GGNNCC 1 cut(s) 154
PsrI GAACNNNNNNTAC 2 cut(s) 542, 574
PsuI RGATCY 3 cut(s) 136, 467, 591
RsaI GTAC 3 cut(s) 85, 1008, 1092
RsaNI GTAC 3 cut(s) 84, 1007, 1091
RseI CAYNNNNRTG 1 cut(s) 795
SaqAI TTAA 8 cut(s) 131, 399, 615, 632, 653, 717, 768, 993
SatI GCNGC 3 cut(s) 230, 375, 778
Sau3AI GATC 6 cut(s) 43, 136, 259, 467, 591, 782
ScaI AGTACT 1 cut(s) 85
SchI GAGTC 1 cut(s) 850
ScrFI CCNGG 1 cut(s) 774
SduI GDGCHC 1 cut(s) 802
SfaNI GCATC 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 795
SmlI CTYRAG 3 cut(s) 39, 553, 595
SmoI CTYRAG 3 cut(s) 39, 553, 595
SspI AATATT 1 cut(s) 815
StyD4I CCNGG 1 cut(s) 772
StyI CCWWGG 1 cut(s) 423
TaiI ACGT 2 cut(s) 362, 564
TaqI TCGA 2 cut(s) 258, 936
TatI WGTACW 3 cut(s) 83, 1006, 1090
TfiI GAWTC 2 cut(s) 78, 677
Tru1I TTAA 8 cut(s) 131, 399, 615, 632, 653, 717, 768, 993
Tru9I TTAA 8 cut(s) 131, 399, 615, 632, 653, 717, 768, 993
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 3 cut(s) 477, 917, 980
TseI GCWGC 3 cut(s) 229, 374, 777
Tsp45I GTSAC 3 cut(s) 477, 917, 980
TspDTI ATGAA 3 cut(s) 111, 263, 431
TspGWI ACGGA 1 cut(s) 659
TspRI CASTG 1 cut(s) 391
XapI RAATTY 3 cut(s) 418, 761, 1062
XceI RCATGY 2 cut(s) 36, 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 254
ZrmI AGTACT 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.