RchiOBHm_Chr3g0473951

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000155
Physical Location & Seq
Forward (+)
19702701 .. 19703255
555 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43960

Sequence Viewer

Length: 555 bp
ATGTTATCTGCAGTTGGAGGTTCTGAAGCTCAAGTAGCTCCTAGGGATAGGAAATTAGACAGATTTAGTGGTCTTCCAGACAATGTGGCTCATCATATTCTTTCATTCCTCAATTTTAGGGCACTCACTCGACTGGGTGGTGTTTCCAAAAGGTGCAGAGAGTGGTATCTGTCGAACCCATCATTTGATATCTATGATTATGGACGAAACAAGCAAGATCAGTTGGGCTTGTTGAATTTTATTGGTAGGTTCTTGGTCCATCGTGGGAATAGTAAGATGCCATATGTTCGTATTAGTTGGGGTTTCTGTTCTGGCATTTCTGATGAGATTTTTCAGTTGATCACATGGATCCAAATTGCAATAAGGTGTAATGTTGAAGAGCTTGAATTTCAGGTTATGAATTGGCATTCACCTGAGACTATAGAATTTCCATCTTGCATTGTTCTTTGTCGATCTTTGAGGTCTCTAGTGCTTGACTTCCATGCAATTCTTAAGTTTCCCACCTTTGCTTCTTTCACTAGTCTCCAAAACTTAGAGTTAAAACATGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

184

Amino Acids

21.14

Weight (kDa)

8.67

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 115 - 183 5.7e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 343, 356
AcsI RAATTY 3 cut(s) 235, 386, 425
AcuI CTGAAG 1 cut(s) 45
AflII CTTAAG 1 cut(s) 491
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 3 cut(s) 235, 377, 386
AhlI ACTAGT 1 cut(s) 518
AluBI AGCT 3 cut(s) 29, 38, 382
AluI AGCT 3 cut(s) 29, 38, 382
Alw26I GTCTC 3 cut(s) 410, 468, 527
AlwI GGATC 2 cut(s) 343, 356
ApoI RAATTY 3 cut(s) 235, 386, 425
AspA2I CCTAGG 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 402
AvaII GGWCC 1 cut(s) 256
AvrII CCTAGG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 124
BamHI GGATCC 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 65
BccI CCATC 3 cut(s) 187, 267, 439
BclI TGATCA 1 cut(s) 339
BcoDI GTCTC 3 cut(s) 410, 468, 527
BcuI ACTAGT 1 cut(s) 518
BfaI CTAG 3 cut(s) 42, 467, 519
BfmI CTRYAG 2 cut(s) 9, 420
BfrI CTTAAG 1 cut(s) 491
BlnI CCTAGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 350
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 175
BsmAI GTCTC 3 cut(s) 410, 468, 527
BsmI GAATGC 1 cut(s) 406
Bso31I GGTCTC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 4 cut(s) 217, 339, 348, 452
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 350
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 2 cut(s) 343, 356
BspQI GCTCTTC 1 cut(s) 372
BspTI CTTAAG 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 468
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 4 cut(s) 217, 339, 348, 452
BssT1I CCWWGG 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 372
BstAFI CTTAAG 1 cut(s) 491
BstDEI CTNAG 2 cut(s) 414, 532
BstKTI GATC 4 cut(s) 220, 342, 351, 455
BstMAI GTCTC 3 cut(s) 410, 468, 527
BstMBI GATC 4 cut(s) 217, 339, 348, 452
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 548
BstSFI CTRYAG 2 cut(s) 9, 420
BstSLI GKGCMC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 256
CviAII CATG 3 cut(s) 345, 482, 545
CviJI RGCY 5 cut(s) 29, 38, 89, 228, 382
CviKI_1 RGCY 5 cut(s) 29, 38, 89, 228, 382
DdeI CTNAG 2 cut(s) 414, 532
DpnI GATC 4 cut(s) 219, 341, 350, 454
DpnII GATC 4 cut(s) 217, 339, 348, 452
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 468
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 3 cut(s) 348, 485, 548
FatI CATG 3 cut(s) 344, 481, 544
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 339
FspBI CTAG 3 cut(s) 42, 467, 519
Hin1II CATG 3 cut(s) 348, 485, 548
HphI GGTGA 1 cut(s) 402
Hpy188I TCNGA 2 cut(s) 25, 322
Hpy188III TCNNGA 1 cut(s) 77
HpyCH4V TGCA 5 cut(s) 11, 156, 359, 438, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 414, 532
Hsp92II CATG 3 cut(s) 348, 485, 548
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 4 cut(s) 217, 339, 348, 452
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 5 cut(s) 90, 119, 297, 377, 426
LweI GCATC 1 cut(s) 267
MaeI CTAG 3 cut(s) 42, 467, 519
MalI GATC 4 cut(s) 219, 341, 350, 454
MboI GATC 4 cut(s) 217, 339, 348, 452
MboII GAAGA 2 cut(s) 65, 389
MflI RGATCY 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 8 cut(s) 53, 112, 235, 354, 386, 400, 425, 486
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 3 cut(s) 11, 119, 453
MseI TTAA 2 cut(s) 492, 539
MspCI CTTAAG 1 cut(s) 491
Mva1269I GAATGC 1 cut(s) 406
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeI CATATG 1 cut(s) 283
NdeII GATC 4 cut(s) 217, 339, 348, 452
NlaIII CATG 3 cut(s) 348, 485, 548
NlaIV GGNNCC 1 cut(s) 350
NspI RCATGY 1 cut(s) 548
PciI ACATGT 1 cut(s) 544
PciSI GCTCTTC 1 cut(s) 372
PctI GAATGC 1 cut(s) 406
PscI ACATGT 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 2 cut(s) 492, 539
Sau3AI GATC 4 cut(s) 217, 339, 348, 452
Sau96I GGNCC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 124
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 2 cut(s) 9, 420
SinI GGWCC 1 cut(s) 256
SmlI CTYRAG 2 cut(s) 30, 491
SmoI CTYRAG 2 cut(s) 30, 491
SpeI ACTAGT 1 cut(s) 518
Sse9I AATT 8 cut(s) 53, 112, 235, 354, 386, 400, 425, 486
SspMI CTAG 3 cut(s) 42, 467, 519
StyI CCWWGG 1 cut(s) 41
TaqI TCGA 3 cut(s) 130, 173, 451
TasI AATT 8 cut(s) 53, 112, 235, 354, 386, 400, 425, 486
Tru1I TTAA 2 cut(s) 492, 539
Tru9I TTAA 2 cut(s) 492, 539
TspDTI ATGAA 2 cut(s) 93, 413
Vha464I CTTAAG 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 3 cut(s) 235, 386, 425
XceI RCATGY 1 cut(s) 548
XmaJI CCTAGG 1 cut(s) 41
XspI CTAG 3 cut(s) 42, 467, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.