Rw3G017310

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000155
Physical Location & Seq
Forward (+)
18724692 .. 18727372
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017310.1

Sequence Viewer

Length: 1272 bp
ATGGAAGACAGGGGGAAGCGTAAGTTATTGGCTACTACTGCAAGTCGTCAAGGCCAAGCAGTTAGAGCTGCAACCGAGGGTTTGATTGATAGGCTGAGTAATCTTCCGGACCATGTGGCTCATCACATTCTTTCGTTCCTTGCTATTAAAGACCTTACTTGTTTCGGCTGTGTGTCCAAAAGATGCCGAGAATTTTATCTGTCAACTCCGACATTGAATTTTGATGGATTTTCCTGGAAGGACTTACGGACTTATGATAAGAGGTTGAGGTTGTGGAGTTATTTGGATAGGTACTTGTTTCATCGTGGGGTTAGTAGGATAGAGCGCTTTTGTATTTACTGGGAAATTTACACTGCGGACCAACAACAAAGCTTACATGAAGATGAGATATTTCGTTTGGACAAATGGATCTACAATGCCATAAGGTATAATGTTGAATTCCTTGACATCAAGTATTTGGGTTGGGAGGCACTGCCCCTTCCTCCTTGCGTCTTACTTAGTGGATCTTTGAAATCTCTGTCTGTGCATGTGAATGGTATGATTTTTAAAGCACCCTCACTCGCTTCTTTCTCTAATCTGGAATGCTTGAAGTTGCAAAGTGTTTTTCTAGTAGATGAGGGGCTTTTCAAATGGATCTCGTGTTCATGCAAATGCATTAAGGAATTGTCTCTTAAATACGTTTGTGGGAGGGGGACAAAGAATGTCACTATTGAAAGCACATCTTTGGAATCATTGTGCATTGAATGGGTTTCTAGTATCTGTTATCTTTACATTACTGGTGAGAAGCTTAGAAAAATAACTATCGACTGGACATTTGGCTCACTTGCAGACAAACCACATACAGATAAATCATTAAATATCTGTGCTCCGAATCTCAACAGTTTAAACTGGACCGGGAGTTTGATGAATCAGCCTAACCTTGGAAGATTAGAATGTTTAGAAGAAGCTAAGATTTGTCTTCTGCCTAGTGATGATGATTTTGTCTATGTATCTGAGGTTCTTTCCTGCTTATCCAGTGCTAAAGTTCTTACACTGAACGACGAGACTACGATGGTTCTGTTCAAGGGAGGTTCCATGCCATTGCTAAAGAATGTTTGTTATTTGTGTATTCATATTGAAGGCTTTCTTGATAATCTAGTCCCTGCAATGACCTCCCTTTTGGGAGGAATGTCTAAGTTGAGTACATTAATCATAAAGTCTGATTCATTCTTCTGTGGCCCTAAAGCTGATGTAAGTAAAAGTAGGCTATCTCCAGTTTCTTCTTTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

423

Amino Acids

47.88

Weight (kDa)

8.01

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 32 - 64 4.3e-07 F-box domain
LRR_At5g56370 PF24758 133 - 267 5.4e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 1 cut(s) 356
AclWI GGATC 3 cut(s) 416, 511, 641
AcsI RAATTY 4 cut(s) 191, 217, 345, 437
AfaI GTAC 2 cut(s) 293, 1183
AfeI AGCGCT 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 920
AgsI TTSAA 9 cut(s) 217, 437, 511, 589, 628, 713, 743, 1063, 1118
AjnI CCWGG 1 cut(s) 233
AloI GAACNNNNNNTCC 2 cut(s) 625, 657
AluBI AGCT 5 cut(s) 68, 372, 787, 947, 1226
AluI AGCT 5 cut(s) 68, 372, 787, 947, 1226
Alw21I GWGCWC 1 cut(s) 868
Alw26I GTCTC 2 cut(s) 672, 1037
AlwI GGATC 3 cut(s) 416, 511, 641
Aor13HI TCCGGA 1 cut(s) 106
Aor51HI AGCGCT 1 cut(s) 326
AoxI GGCC 2 cut(s) 52, 1216
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 4 cut(s) 191, 217, 345, 437
ArsI GACNNNNNNTTYG 6 cut(s) 797, 829, 883, 915, 1141, 1173
AseI ATTAAT 1 cut(s) 1187
Asp700I GAANNNNTTC 1 cut(s) 1122
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 4 cut(s) 109, 358, 891, 1217
AsuC2I CCSGG 1 cut(s) 895
AsuHPI GGTGA 1 cut(s) 791
AvaII GGWCC 3 cut(s) 109, 358, 891
BauI CACGAG 1 cut(s) 637
BbsI GAAGAC 2 cut(s) 12, 950
Bbv12I GWGCWC 1 cut(s) 868
BbvI GCAGC 1 cut(s) 55
BccI CCATC 2 cut(s) 218, 1045
BciT130I CCWGG 1 cut(s) 235
BcnI CCSGG 1 cut(s) 895
BcoDI GTCTC 2 cut(s) 672, 1037
BfaI CTAG 4 cut(s) 608, 753, 966, 1136
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 235, 895
Bme18I GGWCC 3 cut(s) 109, 358, 891
BmgT120I GGNCC 4 cut(s) 109, 358, 891, 1217
BmiI GGNNCC 1 cut(s) 1072
BmrFI CCNGG 2 cut(s) 235, 895
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 173
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 2 cut(s) 12, 950
BpmI CTGGAG 1 cut(s) 1236
BpuMI CCSGG 1 cut(s) 895
BsaJI CCNNGG 2 cut(s) 75, 919
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 920
Bse1I ACTGG 6 cut(s) 344, 781, 812, 893, 1014, 1253
Bse3DI GCAATG 2 cut(s) 1079, 1152
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 75, 919
BseLI CCNNNNNNNGG 1 cut(s) 920
BseMI GCAATG 2 cut(s) 1079, 1152
BseMII CTCAG 2 cut(s) 86, 984
BseNI ACTGG 6 cut(s) 344, 781, 812, 893, 1014, 1253
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 54, 1218
BsiHKAI GWGCWC 1 cut(s) 868
BsiSI CCGG 2 cut(s) 107, 894
BslFI GGGAC 2 cut(s) 706, 1124
BslI CCNNNNNNNGG 1 cut(s) 920
BsmAI GTCTC 2 cut(s) 672, 1037
BsmFI GGGAC 2 cut(s) 706, 1124
BsmI GAATGC 1 cut(s) 587
BsnI GGCC 2 cut(s) 54, 1218
Bsp1286I GDGCHC 1 cut(s) 868
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 3 cut(s) 408, 503, 633
BspACI CCGC 1 cut(s) 356
BspANI GGCC 2 cut(s) 54, 1218
BspCNI CTCAG 2 cut(s) 87, 985
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 1072
BspPI GGATC 3 cut(s) 416, 511, 641
BsrDI GCAATG 2 cut(s) 1079, 1152
BsrI ACTGG 6 cut(s) 344, 781, 812, 893, 1014, 1253
BssECI CCNNGG 2 cut(s) 75, 919
BssMI GATC 3 cut(s) 408, 503, 633
BssSI CACGAG 1 cut(s) 637
BssT1I CCWWGG 1 cut(s) 919
Bst2BI CACGAG 1 cut(s) 637
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 881
BstDEI CTNAG 6 cut(s) 95, 497, 788, 948, 993, 1173
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 3 cut(s) 411, 506, 636
BstMAI GTCTC 2 cut(s) 672, 1037
BstMBI GATC 3 cut(s) 408, 503, 633
BstMWI GCNNNNNNNGC 2 cut(s) 38, 65
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 233, 893
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 2 cut(s) 12, 950
BstX2I RGATCY 3 cut(s) 408, 503, 633
BstYI RGATCY 3 cut(s) 408, 503, 633
BsuRI GGCC 2 cut(s) 54, 1218
BtsI GCAGTG 2 cut(s) 351, 470
BtsIMutI CAGTG 4 cut(s) 351, 470, 1021, 1031
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 4 cut(s) 109, 358, 891, 1217
CseI GACGC 1 cut(s) 478
Csp6I GTAC 2 cut(s) 292, 1182
CviAII CATG 5 cut(s) 113, 377, 527, 645, 1075
CviQI GTAC 2 cut(s) 292, 1182
DdeI CTNAG 6 cut(s) 95, 497, 788, 948, 993, 1173
DpnI GATC 3 cut(s) 410, 505, 635
DpnII GATC 3 cut(s) 408, 503, 633
DraI TTTAAA 2 cut(s) 547, 885
Eco130I CCWWGG 1 cut(s) 919
Eco47I GGWCC 3 cut(s) 109, 358, 891
Eco47III AGCGCT 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 919
EcoT22I ATGCAT 1 cut(s) 656
ErhI CCWWGG 1 cut(s) 919
FaeI CATG 5 cut(s) 116, 380, 530, 648, 1078
FalI AAGNNNNNCTT 4 cut(s) 706, 738, 1110, 1142
FaqI GGGAC 2 cut(s) 706, 1124
FatI CATG 5 cut(s) 112, 376, 526, 644, 1074
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 4 cut(s) 608, 753, 966, 1136
GlaI GCGC 1 cut(s) 326
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 1236
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 2 cut(s) 54, 1218
HapII CCGG 2 cut(s) 107, 894
HgaI GACGC 1 cut(s) 478
HhaI GCGC 1 cut(s) 327
Hin1II CATG 5 cut(s) 116, 380, 530, 648, 1078
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 2 cut(s) 370, 785
HinfI GANTC 4 cut(s) 728, 871, 907, 1202
HpaII CCGG 2 cut(s) 107, 894
HphI GGTGA 1 cut(s) 791
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 5 cut(s) 210, 870, 994, 1201, 1271
Hpy188III TCNNGA 3 cut(s) 107, 578, 1127
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 1 cut(s) 1043
HpyAV CCTTC 3 cut(s) 232, 488, 1112
HpyCH4III ACNGT 1 cut(s) 881
HpyCH4IV ACGT 1 cut(s) 678
HpyCH4V TGCA 9 cut(s) 41, 71, 526, 595, 648, 654, 738, 827, 1145
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 65
HpyF3I CTNAG 6 cut(s) 95, 497, 788, 948, 993, 1173
HpySE526I ACGT 1 cut(s) 678
Hsp92II CATG 5 cut(s) 116, 380, 530, 648, 1078
HspAI GCGC 1 cut(s) 325
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 3 cut(s) 408, 503, 633
LmnI GCTCC 1 cut(s) 871
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 173
MaeI CTAG 4 cut(s) 608, 753, 966, 1136
MaeII ACGT 1 cut(s) 678
MaeIII GTNAC 1 cut(s) 703
MalI GATC 3 cut(s) 410, 505, 635
MboI GATC 3 cut(s) 408, 503, 633
MboII GAAGA 8 cut(s) 17, 95, 392, 936, 950, 953, 1201, 1251
MflI RGATCY 3 cut(s) 408, 503, 633
MhlI GDGCHC 1 cut(s) 868
MluCI AATT 5 cut(s) 191, 217, 345, 437, 662
MmeI TCCRAC 1 cut(s) 233
Mph1103I ATGCAT 1 cut(s) 656
MroI TCCGGA 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 1122
MseI TTAA 7 cut(s) 147, 546, 657, 672, 854, 884, 1187
MslI CAYNNNNRTG 3 cut(s) 381, 531, 649
MspI CCGG 2 cut(s) 107, 894
MspR9I CCNGG 2 cut(s) 235, 895
MssI GTTTAAAC 1 cut(s) 885
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 38, 65
NciI CCSGG 1 cut(s) 895
NdeII GATC 3 cut(s) 408, 503, 633
NlaIII CATG 5 cut(s) 116, 380, 530, 648, 1078
NlaIV GGNNCC 1 cut(s) 1072
NmeAIII GCCGAG 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 703
NsiI ATGCAT 1 cut(s) 656
NspI RCATGY 1 cut(s) 530
PctI GAATGC 1 cut(s) 587
PdmI GAANNNNTTC 1 cut(s) 1122
PfeI GAWTC 4 cut(s) 728, 871, 907, 1202
PfoI TCCNGGA 1 cut(s) 233
PkrI GCNGC 1 cut(s) 70
PmeI GTTTAAAC 1 cut(s) 885
PshBI ATTAAT 1 cut(s) 1187
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 1072
PspPI GGNCC 4 cut(s) 109, 358, 891, 1217
PsrI GAACNNNNNNTAC 2 cut(s) 981, 1013
PsuI RGATCY 3 cut(s) 408, 503, 633
RsaI GTAC 2 cut(s) 293, 1183
RsaNI GTAC 2 cut(s) 292, 1182
RseI CAYNNNNRTG 3 cut(s) 381, 531, 649
SaqAI TTAA 7 cut(s) 147, 546, 657, 672, 854, 884, 1187
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 408, 503, 633
Sau96I GGNCC 4 cut(s) 109, 358, 891, 1217
ScrFI CCNGG 2 cut(s) 235, 895
SduI GDGCHC 1 cut(s) 868
SfaNI GCATC 1 cut(s) 173
SinI GGWCC 3 cut(s) 109, 358, 891
SmiMI CAYNNNNRTG 3 cut(s) 381, 531, 649
Sse9I AATT 5 cut(s) 191, 217, 345, 437, 662
SsiI CCGC 1 cut(s) 356
SspMI CTAG 4 cut(s) 608, 753, 966, 1136
StyD4I CCNGG 2 cut(s) 233, 893
StyI CCWWGG 1 cut(s) 919
TaaI ACNGT 1 cut(s) 881
TaiI ACGT 1 cut(s) 681
TaqI TCGA 1 cut(s) 804
TasI AATT 5 cut(s) 191, 217, 345, 437, 662
TatI WGTACW 1 cut(s) 1181
TfiI GAWTC 4 cut(s) 728, 871, 907, 1202
Tru1I TTAA 7 cut(s) 147, 546, 657, 672, 854, 884, 1187
Tru9I TTAA 7 cut(s) 147, 546, 657, 672, 854, 884, 1187
TscAI CASTG 4 cut(s) 358, 477, 1021, 1038
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 6 cut(s) 290, 393, 633, 920, 1100, 1194
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 4 cut(s) 358, 477, 1021, 1038
VpaK11BI GGWCC 3 cut(s) 109, 358, 891
VspI ATTAAT 1 cut(s) 1187
XapI RAATTY 4 cut(s) 191, 217, 345, 437
XceI RCATGY 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 1122
XspI CTAG 4 cut(s) 608, 753, 966, 1136
Zsp2I ATGCAT 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.