Rmu_sc0004507.1_g000027

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004507.1
OG0000155
Physical Location & Seq
Reverse (-)
127715 .. 128347
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004507.1_g000027.1.cds

Sequence Viewer

Length: 633 bp
ctgcaagttgtcaaggccaagcagttagagctgttaccgaggggtttgattgataggctgagtaatcttccggaccatgttgctcatcacattctgtcattccttgctattgaagaccttactcgtttcggatgtgtgtccaaaggatgtggtgaattgtatttgtcagctccgtcgttgaattttaagggattttcctgcaagaacttggtgacttatgataagaggttgaggttgtggagttatttggataggtacttatttcatcgtggggttaataggatagcgcgctttcattttcactggaaccttgatacacaccaaccaaaaatctttcgtgaagatgagagatttcgtttggacaaatggatctacaatgccataaggtgtaacgttgaagtccttgatattaacatcgagaattcgtgtctggaggcaccgcccttacctttttgcatctctctgtgtcgatctttaaaatctctagtggtcgagatgtattgtaaaatttctaaagcaccctcacttgcttctctctccaatctggaatgcttgaagttgcaagatgttatcatactagatgaggggtgtttcaaaattcaaatggatttcatgttcacgcaaatgcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

210

Amino Acids

24.51

Weight (kDa)

8.52

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 436
AccII CGCG 1 cut(s) 289
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 1 cut(s) 440
AclI AACGTT 1 cut(s) 393
AclWI GGATC 1 cut(s) 377
AcsI RAATTY 4 cut(s) 181, 421, 507, 597
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 6 cut(s) 113, 181, 398, 556, 595, 602
AloI GAACNNNNNNTCC 2 cut(s) 599, 631
AluBI AGCT 2 cut(s) 31, 170
AluI AGCT 2 cut(s) 31, 170
AlwI GGATC 1 cut(s) 377
Aor13HI TCCGGA 1 cut(s) 70
AoxI GGCC 1 cut(s) 15
ApoI RAATTY 4 cut(s) 181, 421, 507, 597
AspLEI GCGC 2 cut(s) 289, 291
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 164, 223
AvaII GGWCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 120
BfaI CTAG 2 cut(s) 485, 578
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 308, 438
BmsI GCATC 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 308
BseAI TCCGGA 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 137, 152
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 308
BsePI GCGCGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 436
BsiSI CCGG 1 cut(s) 71
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 1 cut(s) 17
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 369, 470
BspACI CCGC 1 cut(s) 440
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 70
BspFNI CGCG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 308, 438
BspPI GGATC 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 436
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 38
BssHII GCGCGC 1 cut(s) 287
BssMI GATC 2 cut(s) 369, 470
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 137, 152
BstFNI CGCG 1 cut(s) 289
BstHHI GCGC 2 cut(s) 289, 291
BstKTI GATC 2 cut(s) 372, 473
BstMBI GATC 2 cut(s) 369, 470
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstUI CGCG 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 2 cut(s) 137, 152
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 2 cut(s) 289, 291
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 256
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 2 cut(s) 77, 613
CviJI RGCY 4 cut(s) 17, 31, 58, 170
CviKI_1 RGCY 4 cut(s) 17, 31, 58, 170
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 59
DpnI GATC 2 cut(s) 371, 472
DpnII GATC 2 cut(s) 369, 470
DraI TTTAAA 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 73
EcoRI GAATTC 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 630
FaeI CATG 2 cut(s) 80, 616
FaiI YATR 5 cut(s) 78, 219, 383, 575, 614
FatI CATG 2 cut(s) 76, 612
FokI GGATG 2 cut(s) 144, 159
FspBI CTAG 2 cut(s) 485, 578
GlaI GCGC 2 cut(s) 288, 290
GsuI CTGGAG 1 cut(s) 452
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 71
HhaI GCGC 2 cut(s) 289, 291
Hin1II CATG 2 cut(s) 80, 616
Hin6I GCGC 2 cut(s) 287, 289
HinP1I GCGC 2 cut(s) 287, 289
HpaII CCGG 1 cut(s) 71
HphI GGTGA 2 cut(s) 164, 223
Hpy166II GTNNAC 1 cut(s) 618
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 6 cut(s) 71, 338, 418, 431, 493, 545
Hpy8I GTNNAC 1 cut(s) 618
Hpy99I CGWCG 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 5 cut(s) 4, 201, 456, 562, 628
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 2 cut(s) 80, 616
HspAI GCGC 2 cut(s) 287, 289
Kpn2I TCCGGA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 369, 470
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 5 cut(s) 84, 211, 289, 416, 530
LweI GCATC 1 cut(s) 465
MaeI CTAG 2 cut(s) 485, 578
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 3 cut(s) 33, 211, 389
MalI GATC 2 cut(s) 371, 472
MboI GATC 2 cut(s) 369, 470
MboII GAAGA 3 cut(s) 59, 125, 353
MflI RGATCY 1 cut(s) 369
MluCI AATT 5 cut(s) 155, 181, 421, 507, 597
MnlI CCTC 6 cut(s) 33, 219, 225, 427, 532, 577
Mph1103I ATGCAT 1 cut(s) 630
MroI TCCGGA 1 cut(s) 70
MseI TTAA 5 cut(s) 186, 276, 411, 476, 631
MslI CAYNNNNRTG 1 cut(s) 623
MspI CCGG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 554
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 28
NdeII GATC 2 cut(s) 369, 470
NlaIII CATG 2 cut(s) 80, 616
NlaIV GGNNCC 2 cut(s) 308, 438
NmuCI GTSAC 1 cut(s) 211
NsiI ATGCAT 1 cut(s) 630
PauI GCGCGC 1 cut(s) 287
PctI GAATGC 1 cut(s) 554
Psp1406I AACGTT 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 308, 438
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 1 cut(s) 369
PteI GCGCGC 1 cut(s) 287
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 623
SaqAI TTAA 5 cut(s) 186, 276, 411, 476, 631
Sau3AI GATC 2 cut(s) 369, 470
Sau96I GGNCC 1 cut(s) 73
SfaNI GCATC 1 cut(s) 465
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 623
Sse9I AATT 5 cut(s) 155, 181, 421, 507, 597
SsiI CCGC 1 cut(s) 440
SspMI CTAG 2 cut(s) 485, 578
TaiI ACGT 1 cut(s) 396
TaqI TCGA 3 cut(s) 417, 469, 492
TasI AATT 5 cut(s) 155, 181, 421, 507, 597
Tru1I TTAA 5 cut(s) 186, 276, 411, 476, 631
Tru9I TTAA 5 cut(s) 186, 276, 411, 476, 631
TscAI CASTG 1 cut(s) 308
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 3 cut(s) 254, 284, 601
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 4 cut(s) 181, 421, 507, 597
XspI CTAG 2 cut(s) 485, 578
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.