Rroxscaffold_6G00407490

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000155
Physical Location & Seq
Reverse (-)
30135089 .. 30137436
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407490.1

Sequence Viewer

Length: 978 bp
ATGGGCTGTCAGATTCTTAAAGCACCCTCACTCACATCTTTCTCTAATCTTGAATACTTGAAGTTGACATATGTTATAATAAGAGATGAGGGGATTTTCAAATGGATCTCTTGTTGCTGCAAATGCATTGAGACATTAATTCTTGAACATGCTTATGGGAGTAAAACTGTCACCATTCAAAGCTCTTCTTTAAAATCATTTCACTTTGTGACCGATTATCTGGTTCGTCCCTGCAATCTCAACATCTCTGGTGGAAGACTTGAAGACATATTTATTGACTGGGGATTTAATTCCGATTTCAGCAGATCATTAAATATTTCTGCTCCAGATCTTAAATATTTGAAATGGTCAGGGAATTTGTTGACTCAACAAAATCTGGGGAAAATGACCTGTTTACAGAAAGCTGAGCTCTTTCTGAAACCTGAAGCAGATGACTTTAACATGTTTGAGATTCTTTGCAGCATAAACAGGGTTGAAGTTCTTATTCTAAACAAAGAGACCATCATGGCTATGTACAAGGGAGGTTCCATGTCAGCACCATTAGAAAATGTTCATTACTTGTCTATTCATATTGGAAGTTTTCTTGACATCCTAGTCCTCCCAATGGCTTTGCTTCTTCAAGGAATGCCTAATTTGACTACTTTAGACATGAAGTCTGACCCCTTCTTCCTTGACCCAAAAACTGATTGTTCTGGGTTTAACATGGGATTTTGGAAGGTGCGAAGTCTTGATTTTGTTCATCAACTTAGAGAAGTAACCATTGAGCTATCCAGTGGATCCAATGGAACCGAGTTTGCGAGGTATATCCTTGAGCATGCTCAGAATTTGAACAAAATGACGATTGTGCATTCACCTCATCAGTCTAATGCTATAAGGGTGTTAAAGAAAAGCAAGATGGCTGCCAATGCCAAAGTTGTCTGTCAAGAAGATCAAAACAGAGGAACTGAAAAGCAAAGAGGAAGAAGGGTTGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

325

Amino Acids

36.83

Weight (kDa)

8.46

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 7 - 127 2.8e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AasI GACNNNNNNGTC 1 cut(s) 593
AclWI GGATC 3 cut(s) 113, 771, 784
AcsI RAATTY 2 cut(s) 355, 823
AcuI CTGAAG 1 cut(s) 444
AdeI CACNNNGTG 1 cut(s) 208
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 1 cut(s) 604
AflIII ACRYGT 1 cut(s) 441
AhdI GACNNNNNGTC 1 cut(s) 652
AluBI AGCT 4 cut(s) 183, 404, 409, 766
AluI AGCT 4 cut(s) 183, 404, 409, 766
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 125, 491
AlwI GGATC 3 cut(s) 113, 771, 784
ApeKI GCWGC 3 cut(s) 117, 459, 899
ApoI RAATTY 2 cut(s) 355, 823
AseI ATTAAT 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 549
AsuHPI GGTGA 2 cut(s) 163, 843
BamHI GGATCC 1 cut(s) 776
BanII GRGCYC 1 cut(s) 411
BbsI GAAGAC 2 cut(s) 262, 270
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 3 cut(s) 104, 471, 886
BccI CCATC 2 cut(s) 509, 889
BcoDI GTCTC 2 cut(s) 125, 491
BfaI CTAG 1 cut(s) 593
BglII AGATCT 1 cut(s) 328
BisI GCNGC 3 cut(s) 118, 460, 900
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 3 cut(s) 119, 461, 901
BmeRI GACNNNNNGTC 1 cut(s) 652
BmiI GGNNCC 3 cut(s) 526, 778, 787
BmrI ACTGGG 1 cut(s) 289
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 262, 270
BpmI CTGGAG 1 cut(s) 309
Bpu1102I GCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 830
BsaI GGTCTC 1 cut(s) 491
Bsc4I CCNNNNNNNGG 1 cut(s) 604
Bse1I ACTGG 2 cut(s) 284, 771
BseGI GGATG 1 cut(s) 588
BseLI CCNNNNNNNGG 1 cut(s) 604
BseMII CTCAG 2 cut(s) 396, 833
BseNI ACTGG 2 cut(s) 284, 771
BseXI GCAGC 3 cut(s) 104, 471, 886
BsiHKAI GWGCWC 1 cut(s) 411
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 604
BsmAI GTCTC 2 cut(s) 125, 491
BsmFI GGGAC 1 cut(s) 213
BsmI GAATGC 2 cut(s) 630, 847
Bso31I GGTCTC 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 411
Bsp1407I TGTACA 1 cut(s) 513
Bsp143I GATC 5 cut(s) 105, 305, 328, 776, 928
Bsp1720I GCTNAGC 1 cut(s) 405
BspCNI CTCAG 2 cut(s) 397, 832
BspLI GGNNCC 3 cut(s) 526, 778, 787
BspPI GGATC 3 cut(s) 113, 771, 784
BspQI GCTCTTC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 491
BsrGI TGTACA 1 cut(s) 513
BsrI ACTGG 2 cut(s) 284, 771
BssMI GATC 5 cut(s) 105, 305, 328, 776, 928
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 190
BstAUI TGTACA 1 cut(s) 513
BstC8I GCNNGC 1 cut(s) 816
BstDEI CTNAG 3 cut(s) 405, 746, 819
BstF5I GGATG 1 cut(s) 588
BstKTI GATC 5 cut(s) 108, 308, 331, 779, 931
BstMAI GTCTC 2 cut(s) 125, 491
BstMBI GATC 5 cut(s) 105, 305, 328, 776, 928
BstMWI GCNNNNNNNGC 2 cut(s) 123, 905
BstNSI RCATGY 3 cut(s) 152, 445, 818
BstV1I GCAGC 3 cut(s) 104, 471, 886
BstV2I GAAGAC 2 cut(s) 262, 270
BstX2I RGATCY 3 cut(s) 105, 328, 776
BstYI RGATCY 3 cut(s) 105, 328, 776
BtsCI GGATG 1 cut(s) 588
BtsIMutI CAGTG 1 cut(s) 778
Cac8I GCNNGC 1 cut(s) 816
Csp6I GTAC 1 cut(s) 514
CviAII CATG 7 cut(s) 149, 442, 505, 529, 649, 703, 815
CviJI RGCY 8 cut(s) 6, 183, 404, 409, 509, 608, 766, 899
CviKI_1 RGCY 8 cut(s) 6, 183, 404, 409, 509, 608, 766, 899
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 3 cut(s) 405, 746, 819
DpnI GATC 5 cut(s) 107, 307, 330, 778, 930
DpnII GATC 5 cut(s) 105, 305, 328, 776, 928
DraI TTTAAA 1 cut(s) 192
DraIII CACNNNGTG 1 cut(s) 208
DrdI GACNNNNNNGTC 1 cut(s) 593
DriI GACNNNNNGTC 1 cut(s) 652
DseDI GACNNNNNNGTC 1 cut(s) 593
Eam1104I CTCTTC 1 cut(s) 190
Eam1105I GACNNNNNGTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 491
Eco53kI GAGCTC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 409
EcoT22I ATGCAT 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 411
FaeI CATG 7 cut(s) 152, 445, 508, 532, 652, 706, 818
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FaqI GGGAC 1 cut(s) 213
FatI CATG 7 cut(s) 148, 441, 504, 528, 648, 702, 814
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 3 cut(s) 118, 460, 900
FokI GGATG 1 cut(s) 575
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 3 cut(s) 118, 460, 900
FspBI CTAG 1 cut(s) 593
GluI GCNGC 3 cut(s) 118, 460, 900
GsuI CTGGAG 1 cut(s) 309
Hin1II CATG 7 cut(s) 152, 445, 508, 532, 652, 706, 818
HincII GTYRAC 2 cut(s) 66, 363
HindII GTYRAC 2 cut(s) 66, 363
HinfI GANTC 3 cut(s) 13, 364, 451
HphI GGTGA 2 cut(s) 163, 843
Hpy166II GTNNAC 3 cut(s) 66, 363, 395
Hpy188I TCNGA 5 cut(s) 12, 295, 417, 658, 822
Hpy188III TCNNGA 6 cut(s) 50, 143, 326, 584, 728, 923
Hpy8I GTNNAC 3 cut(s) 66, 363, 395
HpyAV CCTTC 3 cut(s) 673, 709, 957
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 5 cut(s) 120, 126, 234, 459, 847
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 905
HpyF3I CTNAG 3 cut(s) 405, 746, 819
Hsp92II CATG 7 cut(s) 152, 445, 508, 532, 652, 706, 818
Kzo9I GATC 5 cut(s) 105, 305, 328, 776, 928
LguI GCTCTTC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 328
Lsp1109I GCAGC 3 cut(s) 104, 471, 886
MaeI CTAG 1 cut(s) 593
MaeIII GTNAC 3 cut(s) 169, 208, 754
MalI GATC 5 cut(s) 107, 307, 330, 778, 930
MboI GATC 5 cut(s) 105, 305, 328, 776, 928
MboII GAAGA 7 cut(s) 177, 267, 275, 608, 658, 938, 972
MflI RGATCY 3 cut(s) 105, 328, 776
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 5 cut(s) 138, 289, 355, 631, 823
MlyI GAGTC 1 cut(s) 358
MnlI CCTC 8 cut(s) 37, 82, 515, 608, 792, 864, 932, 950
Mph1103I ATGCAT 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 9 cut(s) 18, 137, 191, 288, 311, 333, 438, 699, 881
MslI CAYNNNNRTG 2 cut(s) 153, 509
Mva1269I GAATGC 2 cut(s) 630, 847
MwoI GCNNNNNNNGC 2 cut(s) 123, 905
NdeI CATATG 1 cut(s) 70
NdeII GATC 5 cut(s) 105, 305, 328, 776, 928
NlaIII CATG 7 cut(s) 152, 445, 508, 532, 652, 706, 818
NlaIV GGNNCC 3 cut(s) 526, 778, 787
NmuCI GTSAC 2 cut(s) 169, 208
NsiI ATGCAT 1 cut(s) 128
NspI RCATGY 3 cut(s) 152, 445, 818
PaeI GCATGC 1 cut(s) 818
PciI ACATGT 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 190
PctI GAATGC 2 cut(s) 630, 847
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 2 cut(s) 13, 451
PkrI GCNGC 3 cut(s) 119, 461, 901
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PscI ACATGT 1 cut(s) 441
PshBI ATTAAT 1 cut(s) 137
PsiI TTATAA 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 411
PspN4I GGNNCC 3 cut(s) 526, 778, 787
PsuI RGATCY 3 cut(s) 105, 328, 776
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
RseI CAYNNNNRTG 2 cut(s) 153, 509
SacI GAGCTC 1 cut(s) 411
SapI GCTCTTC 1 cut(s) 190
SaqAI TTAA 9 cut(s) 18, 137, 191, 288, 311, 333, 438, 699, 881
SatI GCNGC 3 cut(s) 118, 460, 900
Sau3AI GATC 5 cut(s) 105, 305, 328, 776, 928
SchI GAGTC 1 cut(s) 358
SduI GDGCHC 1 cut(s) 411
SmiMI CAYNNNNRTG 2 cut(s) 153, 509
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
SphI GCATGC 1 cut(s) 818
Sse9I AATT 5 cut(s) 138, 289, 355, 631, 823
SspI AATATT 2 cut(s) 316, 338
SspMI CTAG 1 cut(s) 593
SstI GAGCTC 1 cut(s) 411
TaaI ACNGT 1 cut(s) 169
TaqII GACCGA 1 cut(s) 227
TasI AATT 5 cut(s) 138, 289, 355, 631, 823
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 2 cut(s) 13, 451
Tru1I TTAA 9 cut(s) 18, 137, 191, 288, 311, 333, 438, 699, 881
Tru9I TTAA 9 cut(s) 18, 137, 191, 288, 311, 333, 438, 699, 881
TscAI CASTG 1 cut(s) 778
TseFI GTSAC 2 cut(s) 169, 208
TseI GCWGC 3 cut(s) 117, 459, 899
Tsp45I GTSAC 2 cut(s) 169, 208
TspDTI ATGAA 4 cut(s) 542, 557, 665, 728
TspRI CASTG 1 cut(s) 778
VspI ATTAAT 1 cut(s) 137
XapI RAATTY 2 cut(s) 355, 823
XceI RCATGY 3 cut(s) 152, 445, 818
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 1 cut(s) 593
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.