RLG00000023971

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000155
Physical Location & Seq
Reverse (-)
30597134 .. 30599044
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023971

Sequence Viewer

Length: 705 bp
ATGGAGCGAAAGCAGAAGTCATTGGCAACTTCGAGTTCTCGAGCTCCAGGAGCTTGTGCTGACAGTGTTTTCAGATTCTTTAGTCTCCCAGAGGAAGTTTCGCATCACATTCTGTCCTTCCTTCCTGTCAAAGACCTCATTCGCTACGGCGGACTGTCCCAGAAATGCAAAGAGTTTCAACTGTCGACTCCGTCATTGAACTTTGAAGGGTTTTCGCACCTGTCTAATAATAGGCATTTCAGGTTGTTGAGTTGCTTGGATAGGTTTTTGGCTCTATTTAGGGAAGGTCACATTCCTGCACAGTTCGATCATATTTCCTACTTGGGTATGGATATTAAGAGCTGGGATGATGATGTAGTTCCAGCAATGGTCTCTCTTATGAAAGGAATGCCGAATTTGAATACTTTGAACTTGAAGTCTAACCATTCCGTAAACATCCCAAAACCTGAGGAATGCCGATTTGATAGGACGTACTGGAAATCCCAAAACTTGTCTTTGATTTTGGAGCTGAAGGAGGTAATAATAGAGCTTTCCCGTGGGAACATTGAATTGGAGTTAGCAAGGCATATCCTCGAGGATGCTAAGAACTTGCAGAAAATGGTTATAATTTATTCACCACAGCAATCAAATCTTATCAGAGGACTAAAGGAGAGCAAGATGAATTCCACCGCTATCATTGTCTTTCAGGAAAAACAAAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

235

Amino Acids

26.89

Weight (kDa)

9.01

Isoelectric Point (pI)

60.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
AbsI CCTCGAGG 1 cut(s) 572
AccI GTMKAC 1 cut(s) 185
AciI CCGC 2 cut(s) 150, 669
AcsI RAATTY 2 cut(s) 394, 661
AcuI CTGAAG 1 cut(s) 530
AfaI GTAC 1 cut(s) 473
AgsI TTSAA 7 cut(s) 179, 199, 206, 400, 409, 415, 548
AjnI CCWGG 1 cut(s) 46
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AluBI AGCT 5 cut(s) 44, 53, 342, 508, 529
AluI AGCT 5 cut(s) 44, 53, 342, 508, 529
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 89, 376
Ama87I CYCGRG 2 cut(s) 39, 572
ApoI RAATTY 2 cut(s) 394, 661
AsuHPI GGTGA 1 cut(s) 606
AvaI CYCGRG 2 cut(s) 39, 572
AxyI CCTNAGG 1 cut(s) 447
BanII GRGCYC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 89, 376
Bme1390I CCNGG 1 cut(s) 48
BmeT110I CYCGRG 2 cut(s) 39, 572
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 2 cut(s) 112, 568
BpmI CTGGAG 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 535
Bse1I ACTGG 1 cut(s) 479
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 372
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 3 cut(s) 352, 435, 583
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 479
BseYI CCCAGC 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 2 cut(s) 39, 572
BslFI GGGAC 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 89, 376
BsmFI GGGAC 1 cut(s) 142
BsmI GAATGC 2 cut(s) 393, 458
Bso31I GGTCTC 1 cut(s) 376
BsoBI CYCGRG 2 cut(s) 39, 572
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 2 cut(s) 150, 669
BspCNI CTCAG 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 1 cut(s) 479
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 4 cut(s) 65, 156, 183, 303
BstDEI CTNAG 2 cut(s) 447, 582
BstDSI CCRYGG 1 cut(s) 535
BstF5I GGATG 3 cut(s) 352, 435, 583
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 2 cut(s) 89, 376
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 447
BtgI CCRYGG 1 cut(s) 535
BtsCI GGATG 3 cut(s) 352, 435, 583
BtsIMutI CAGTG 1 cut(s) 70
Csp6I GTAC 1 cut(s) 472
CviJI RGCY 6 cut(s) 44, 53, 272, 342, 508, 529
CviKI_1 RGCY 6 cut(s) 44, 53, 272, 342, 508, 529
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 2 cut(s) 447, 582
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EciI GGCGGA 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 530
Eco81I CCTNAGG 1 cut(s) 447
Eco88I CYCGRG 2 cut(s) 39, 572
EcoICRI GAGCTC 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 46
FaiI YATR 5 cut(s) 312, 329, 380, 567, 605
FaqI GGGAC 1 cut(s) 142
FblI GTMKAC 1 cut(s) 185
FokI GGATG 3 cut(s) 359, 422, 590
FriOI GRGCYC 1 cut(s) 46
GsaI CCCAGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 30
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 2 cut(s) 75, 187
HphI GGTGA 1 cut(s) 606
Hpy166II GTNNAC 2 cut(s) 186, 433
Hpy188I TCNGA 2 cut(s) 74, 638
Hpy188III TCNNGA 2 cut(s) 39, 686
Hpy8I GTNNAC 2 cut(s) 186, 433
HpyAV CCTTC 5 cut(s) 127, 131, 200, 278, 505
HpyCH4III ACNGT 4 cut(s) 65, 156, 183, 303
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 3 cut(s) 168, 299, 592
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 447, 582
HpySE526I ACGT 1 cut(s) 470
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 4 cut(s) 4, 49, 50, 505
LweI GCATC 2 cut(s) 112, 568
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 287
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 4 cut(s) 394, 548, 606, 661
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 7 cut(s) 85, 146, 442, 508, 568, 581, 632
MseI TTAA 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 48
Mva1269I GAATGC 2 cut(s) 393, 458
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 287
PaeR7I CTCGAG 2 cut(s) 39, 572
PctI GAATGC 2 cut(s) 393, 458
PfeI GAWTC 1 cut(s) 75
PflFI GACNNNGTC 1 cut(s) 190
PfoI TCCNGGA 1 cut(s) 46
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PsiI TTATAA 1 cut(s) 605
Psp124BI GAGCTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 342
PspGI CCWGG 1 cut(s) 46
PspXI VCTCGAGB 1 cut(s) 572
PsyI GACNNNGTC 1 cut(s) 190
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SacI GAGCTC 1 cut(s) 46
SalI GTCGAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 1 cut(s) 307
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 112, 568
Sfr274I CTCGAG 2 cut(s) 39, 572
SlaI CTCGAG 2 cut(s) 39, 572
SmlI CTYRAG 2 cut(s) 39, 572
SmoI CTYRAG 2 cut(s) 39, 572
Sse9I AATT 4 cut(s) 394, 548, 606, 661
SsiI CCGC 2 cut(s) 150, 669
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 4 cut(s) 65, 156, 183, 303
TaiI ACGT 1 cut(s) 473
TaqI TCGA 5 cut(s) 32, 40, 185, 306, 573
TasI AATT 4 cut(s) 394, 548, 606, 661
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 395, 674
TspGWI ACGGA 2 cut(s) 180, 418
TspRI CASTG 1 cut(s) 70
Tth111I GACNNNGTC 1 cut(s) 190
XapI RAATTY 2 cut(s) 394, 661
XhoI CTCGAG 2 cut(s) 39, 572
XmiI GTMKAC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.