Rh7CG239000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000155
Physical Location & Seq
Forward (+)
22351369 .. 22354320
2952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG239000.1

Sequence Viewer

Length: 948 bp
ATGATGACTTGGATCCTTATTGCAGTGAGGTGCAATGTTGAAGTGCTTGATCTTGAGTTGAGGTTGAATACAAAAGATGGGGCAACACCTGAATTGCCATCTTGCATTTATTGTTGTGAATCTTTGAGATCTCTGTTTATCAACACAGAGACAATTCTTAAAGCACCCTCCTTTGCTTGTTCCAATAATCTCCGGTACTTGAAATTGACTAGGGTTAGAATGGATGAAGGGTTTGGCAAATGGATCTCGTGCTCATGCAAATGCATTAAGGAACTATTGTTAGACAATGTTCATGTCGGAAGTTTCAGCATTGAAAGCTCGTCTTTGGAATCATTTACATTGTTATATACCTATAATAGTGACCCCTGCCATTTTAGCATCTCTGGTGAGAAACTTGCAGAGATAAATATATTGTGGGAAAACAGTCAAGCTAGCAGCAGTATTACCAAATCATTAAATGTTTATGCCCCAAATCTGAAGTATTTTAAATGGATTGGGAATTTGTTGAATTACCAAAATTTGGGGGAATTTATGTGTTTAGAAAAAGCTCATATCTTTCTCAAGCCTCAGGGAGATGACGATGACTTTGACAATGCATTTGAGGTTCTTTGCAGTTTGTACAGGGTTAAATCACTTGTTCTGACTGGGGAGACCATTAAGGTATTGCTCAGGGAAGGTTGCATGCCTGCCCCATTGGATGGTACTACTTACTTGGGTATGCATATTAACAGCTTGACTGATGACCTAGTCCCTGTAATGGCCTCTCTTCTGAGAGGAATGCCTAATCTGAAGACTTTGTACATAAATTCTTACCCTTCCTTGAACATTGTTAAACCGAAAATGCTTGATGCAATTCCTAGTTTGAGAAAGGATGAGGAAAGAATGAGATTGAACAATGGAAGCATCTTGTTAGCGGATCTCACTGCATCGTTGATCAAGCTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

315

Amino Acids

35.48

Weight (kDa)

5.53

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 4 - 165 1.6e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 520, 698
AciI CCGC 1 cut(s) 914
AclWI GGATC 4 cut(s) 7, 20, 251, 924
AcsI RAATTY 4 cut(s) 499, 517, 527, 805
AcuI CTGAAG 2 cut(s) 497, 809
AfaI GTAC 4 cut(s) 197, 620, 703, 800
AfiI CCNNNNNNNGG 3 cut(s) 520, 698, 757
AgsI TTSAA 7 cut(s) 41, 67, 202, 314, 508, 823, 892
AluBI AGCT 5 cut(s) 318, 431, 548, 732, 940
AluI AGCT 5 cut(s) 318, 431, 548, 732, 940
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 2 cut(s) 143, 644
AlwI GGATC 4 cut(s) 7, 20, 251, 924
AoxI GGCC 1 cut(s) 759
ApeKI GCWGC 1 cut(s) 435
ApoI RAATTY 4 cut(s) 499, 517, 527, 805
ArsI GACNNNNNNTTYG 4 cut(s) 569, 581, 601, 613
AsuHPI GGTGA 1 cut(s) 398
AsuNHI GCTAGC 1 cut(s) 431
AxyI CCTNAGG 1 cut(s) 567
BamHI GGATCC 1 cut(s) 12
BarI GAAGNNNNNNTAC 2 cut(s) 782, 814
BauI CACGAG 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 797
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 447
BccI CCATC 3 cut(s) 71, 106, 692
BclI TGATCA 1 cut(s) 933
BcoDI GTCTC 2 cut(s) 143, 644
BfaI CTAG 5 cut(s) 210, 432, 746, 858, 941
BglII AGATCT 1 cut(s) 128
BisI GCNGC 1 cut(s) 436
BlsI GCNGC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 4 cut(s) 387, 838, 912, 935
BmtI GCTAGC 1 cut(s) 435
BmuI ACTGGG 1 cut(s) 654
BpiI GAAGAC 1 cut(s) 797
Bpu10I CCTNAGC 1 cut(s) 668
BpuEI CTTGAG 2 cut(s) 74, 545
BsaI GGTCTC 1 cut(s) 644
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 3 cut(s) 520, 698, 757
Bse1I ACTGG 1 cut(s) 649
Bse21I CCTNAGG 1 cut(s) 567
Bse3DI GCAATG 1 cut(s) 40
BseGI GGATG 3 cut(s) 229, 703, 877
BseLI CCNNNNNNNGG 3 cut(s) 520, 698, 757
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 3 cut(s) 581, 682, 761
BseNI ACTGG 1 cut(s) 649
BseXI GCAGC 1 cut(s) 447
BshFI GGCC 1 cut(s) 761
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 3 cut(s) 520, 698, 757
BsmAI GTCTC 2 cut(s) 143, 644
BsmFI GGGAC 1 cut(s) 734
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 1 cut(s) 761
Bso31I GGTCTC 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 254
Bsp1407I TGTACA 2 cut(s) 618, 798
Bsp143I GATC 6 cut(s) 12, 49, 128, 243, 916, 933
BspACI CCGC 1 cut(s) 914
BspANI GGCC 1 cut(s) 761
BspCNI CTCAG 3 cut(s) 580, 681, 762
BspLI GGNNCC 1 cut(s) 14
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 4 cut(s) 7, 20, 251, 924
BspTNI GGTCTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 40
BsrGI TGTACA 2 cut(s) 618, 798
BsrI ACTGG 1 cut(s) 649
BssMI GATC 6 cut(s) 12, 49, 128, 243, 916, 933
BssSI CACGAG 1 cut(s) 247
Bst2BI CACGAG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 425
Bst6I CTCTTC 1 cut(s) 771
BstAUI TGTACA 2 cut(s) 618, 798
BstC8I GCNNGC 3 cut(s) 433, 683, 687
BstDEI CTNAG 3 cut(s) 567, 668, 770
BstF5I GGATG 3 cut(s) 229, 703, 877
BstKTI GATC 6 cut(s) 15, 52, 131, 246, 919, 936
BstMAI GTCTC 2 cut(s) 143, 644
BstMBI GATC 6 cut(s) 12, 49, 128, 243, 916, 933
BstMWI GCNNNNNNNGC 2 cut(s) 315, 375
BstNSI RCATGY 1 cut(s) 685
BstV1I GCAGC 1 cut(s) 447
BstV2I GAAGAC 1 cut(s) 797
BstX2I RGATCY 4 cut(s) 12, 128, 243, 916
BstYI RGATCY 4 cut(s) 12, 128, 243, 916
Bsu36I CCTNAGG 1 cut(s) 567
BsuRI GGCC 1 cut(s) 761
BtsCI GGATG 3 cut(s) 229, 703, 877
BtsI GCAGTG 2 cut(s) 30, 921
BtsIMutI CAGTG 2 cut(s) 30, 921
Cac8I GCNNGC 3 cut(s) 433, 683, 687
Csp6I GTAC 4 cut(s) 196, 619, 702, 799
CviAII CATG 3 cut(s) 255, 293, 682
CviJI RGCY 7 cut(s) 318, 431, 548, 565, 732, 761, 940
CviKI_1 RGCY 7 cut(s) 318, 431, 548, 565, 732, 761, 940
CviQI GTAC 4 cut(s) 196, 619, 702, 799
DdeI CTNAG 3 cut(s) 567, 668, 770
DpnI GATC 6 cut(s) 14, 51, 130, 245, 918, 935
DpnII GATC 6 cut(s) 12, 49, 128, 243, 916, 933
DraI TTTAAA 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 771
EarI CTCTTC 1 cut(s) 771
Eco31I GGTCTC 1 cut(s) 644
Eco57I CTGAAG 2 cut(s) 497, 809
Eco81I CCTNAGG 1 cut(s) 567
EcoT22I ATGCAT 3 cut(s) 266, 598, 723
FaeI CATG 3 cut(s) 258, 296, 685
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 1 cut(s) 734
FatI CATG 3 cut(s) 254, 292, 681
FbaI TGATCA 1 cut(s) 933
Fnu4HI GCNGC 1 cut(s) 436
FokI GGATG 3 cut(s) 236, 710, 884
Fsp4HI GCNGC 1 cut(s) 436
FspBI CTAG 5 cut(s) 210, 432, 746, 858, 941
GluI GCNGC 1 cut(s) 436
HaeIII GGCC 1 cut(s) 761
HapII CCGG 1 cut(s) 193
Hin1II CATG 3 cut(s) 258, 296, 685
HinfI GANTC 2 cut(s) 119, 329
HpaII CCGG 1 cut(s) 193
HphI GGTGA 1 cut(s) 398
Hpy188I TCNGA 5 cut(s) 299, 477, 642, 771, 789
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 221, 668, 825
HpyCH4III ACNGT 1 cut(s) 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 315, 375
HpyF3I CTNAG 3 cut(s) 567, 668, 770
Hsp92II CATG 3 cut(s) 258, 296, 685
Ksp22I TGATCA 1 cut(s) 933
Kzo9I GATC 6 cut(s) 12, 49, 128, 243, 916, 933
Lsp1109I GCAGC 1 cut(s) 447
LweI GCATC 4 cut(s) 387, 838, 912, 935
MaeI CTAG 5 cut(s) 210, 432, 746, 858, 941
MaeIII GTNAC 1 cut(s) 359
MalI GATC 6 cut(s) 14, 51, 130, 245, 918, 935
MboI GATC 6 cut(s) 12, 49, 128, 243, 916, 933
MboII GAAGA 2 cut(s) 758, 802
MflI RGATCY 4 cut(s) 12, 128, 243, 916
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 9 cut(s) 92, 153, 203, 499, 508, 517, 527, 805, 852
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 8 cut(s) 21, 54, 178, 576, 595, 767, 772, 868
Mph1103I ATGCAT 3 cut(s) 266, 598, 723
MseI TTAA 8 cut(s) 159, 267, 455, 486, 627, 657, 726, 831
MslI CAYNNNNRTG 1 cut(s) 259
MspI CCGG 1 cut(s) 193
Mva1269I GAATGC 1 cut(s) 783
MwoI GCNNNNNNNGC 2 cut(s) 315, 375
NdeII GATC 6 cut(s) 12, 49, 128, 243, 916, 933
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 3 cut(s) 258, 296, 685
NlaIV GGNNCC 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 359
NsiI ATGCAT 3 cut(s) 266, 598, 723
NspI RCATGY 1 cut(s) 685
PaeI GCATGC 1 cut(s) 685
PctI GAATGC 1 cut(s) 783
PfeI GAWTC 2 cut(s) 119, 329
PflFI GACNNNGTC 1 cut(s) 746
PflMI CCANNNNNTGG 2 cut(s) 520, 698
PkrI GCNGC 1 cut(s) 437
PspN4I GGNNCC 1 cut(s) 14
PsuI RGATCY 4 cut(s) 12, 128, 243, 916
PsyI GACNNNGTC 1 cut(s) 746
RsaI GTAC 4 cut(s) 197, 620, 703, 800
RsaNI GTAC 4 cut(s) 196, 619, 702, 799
RseI CAYNNNNRTG 1 cut(s) 259
SaqAI TTAA 8 cut(s) 159, 267, 455, 486, 627, 657, 726, 831
SatI GCNGC 1 cut(s) 436
Sau3AI GATC 6 cut(s) 12, 49, 128, 243, 916, 933
SduI GDGCHC 1 cut(s) 254
SfaNI GCATC 4 cut(s) 387, 838, 912, 935
SmiMI CAYNNNNRTG 1 cut(s) 259
SmlI CTYRAG 2 cut(s) 53, 560
SmoI CTYRAG 2 cut(s) 53, 560
SphI GCATGC 1 cut(s) 685
Sse9I AATT 9 cut(s) 92, 153, 203, 499, 508, 517, 527, 805, 852
SsiI CCGC 1 cut(s) 914
SspMI CTAG 5 cut(s) 210, 432, 746, 858, 941
TaaI ACNGT 1 cut(s) 425
TasI AATT 9 cut(s) 92, 153, 203, 499, 508, 517, 527, 805, 852
TatI WGTACW 2 cut(s) 618, 798
TfiI GAWTC 2 cut(s) 119, 329
Tru1I TTAA 8 cut(s) 159, 267, 455, 486, 627, 657, 726, 831
Tru9I TTAA 8 cut(s) 159, 267, 455, 486, 627, 657, 726, 831
TscAI CASTG 2 cut(s) 30, 928
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 1 cut(s) 435
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 240, 281
TspRI CASTG 2 cut(s) 30, 928
Tth111I GACNNNGTC 1 cut(s) 746
Van91I CCANNNNNTGG 2 cut(s) 520, 698
XapI RAATTY 4 cut(s) 499, 517, 527, 805
XceI RCATGY 1 cut(s) 685
XspI CTAG 5 cut(s) 210, 432, 746, 858, 941
Zsp2I ATGCAT 3 cut(s) 266, 598, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.