Rmu_sc0018174.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018174.1
OG0000155
Physical Location & Seq
Forward (+)
1 .. 1803
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018174.1_g000001.1.cds

Sequence Viewer

Length: 1038 bp
tctatcttacgttgtgcaactttgaggtctttgtctgtggaaatgaagtataagtataggttccttacattacccgcctcggcttgtttcgctaatattgaatgcttgaagctgaaaaatattcatgtagtggatgagggatttttcagatggatctcatcctcttgcaagtgcattaaggaattacgtctcgaaggaattgaggggataagtcatctctcaattgaaagttcatctttagtgtcgtttagtgttgtgcatccgtttcagtcggatccactgattctcagcatctctgccgagaaactggtagacctagttattgactgggggtttcaaaattgcaagaaggtgttgaatgttactgctccggaagttagatatttgaagttggaagggaattctttgattcaccaaaaacttggggaattgaggcgtttagaaaaggctgatctttgtctgagacctggagggaatgacattaacatgctatctgagtttattagcagtatacgaagtgtcaaagttcttattttaggggaggagatcctaaaggctcttttccagaaaggatccagaccagcacctttagataatgttcatcatctgtgtatgcatgtcgggtacatgcttgatgatgttgttccggcaatggtctctatcttgaaaggaattcctaatttgagtactttgtacataaagtcatttccaatctttatccaccttggatctaaatcatcaggatataatgtggcatattggaaattgctagaccttgcttttgttcatcaactggaggaggtaaccatagagcttcctaatgggtctaatggaatagaattagcaagctatctgctcgagcacgctaaaagtttgaagaaaatggtgattgtacattcaccccaacaatctagtgttgaaaggaagttgcatataacatataagaagtccaatctcagagttgtcttggaggaagatcaaaagagaggaactttggagcgaaatagcagaagagctttttccagagaaaggatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

345

Amino Acids

39.03

Weight (kDa)

9.07

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 312, 511
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 1 cut(s) 75
AclWI GGATC 7 cut(s) 161, 269, 282, 541, 567, 580, 736
AcsI RAATTY 2 cut(s) 400, 672
AfaI GTAC 4 cut(s) 626, 688, 695, 894
AfiI CCNNNNNNNGG 1 cut(s) 1029
AgsI TTSAA 9 cut(s) 101, 109, 227, 338, 358, 388, 667, 877, 920
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 4 cut(s) 112, 814, 849, 1016
AluI AGCT 4 cut(s) 112, 814, 849, 1016
Alw21I GWGCWC 1 cut(s) 864
Alw26I GTCTC 3 cut(s) 194, 457, 661
AlwI GGATC 7 cut(s) 161, 269, 282, 541, 567, 580, 736
Ama87I CYCGRG 1 cut(s) 857
Aor13HI TCCGGA 1 cut(s) 370
ApoI RAATTY 2 cut(s) 400, 672
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
AsuHPI GGTGA 3 cut(s) 404, 891, 898
AvaI CYCGRG 1 cut(s) 857
BamHI GGATCC 2 cut(s) 274, 572
Bbv12I GWGCWC 1 cut(s) 864
BccI CCATC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 468
BcoDI GTCTC 3 cut(s) 194, 457, 661
BfaI CTAG 3 cut(s) 317, 770, 912
BmcAI AGTACT 1 cut(s) 688
Bme1390I CCNGG 1 cut(s) 468
BmeT110I CYCGRG 1 cut(s) 857
BmiI GGNNCC 3 cut(s) 62, 276, 574
BmrFI CCNGG 1 cut(s) 468
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 2 cut(s) 268, 300
BmuI ACTGGG 1 cut(s) 337
BpmI CTGGAG 2 cut(s) 489, 815
BsaBI GATNNNNATC 1 cut(s) 733
BsaI GGTCTC 2 cut(s) 457, 661
BsaJI CCNNGG 2 cut(s) 78, 724
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 1029
Bse1I ACTGG 3 cut(s) 312, 332, 798
Bse3DI GCAATG 1 cut(s) 657
Bse8I GATNNNNATC 1 cut(s) 733
BseAI TCCGGA 1 cut(s) 370
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 78, 724
BseGI GGATG 3 cut(s) 139, 158, 259
BseJI GATNNNNATC 1 cut(s) 733
BseLI CCNNNNNNNGG 1 cut(s) 1029
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 4 cut(s) 301, 452, 486, 970
BseNI ACTGG 3 cut(s) 312, 332, 798
BseRI GAGGAG 2 cut(s) 557, 812
BsiHKAI GWGCWC 1 cut(s) 864
BsiHKCI CYCGRG 1 cut(s) 857
BsiSI CCGG 2 cut(s) 371, 647
BslI CCNNNNNNNGG 1 cut(s) 1029
BsmAI GTCTC 3 cut(s) 194, 457, 661
BsmBI CGTCTC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 107
Bso31I GGTCTC 2 cut(s) 457, 661
BsoBI CYCGRG 1 cut(s) 857
Bsp1286I GDGCHC 1 cut(s) 864
Bsp13I TCCGGA 1 cut(s) 370
Bsp1407I TGTACA 2 cut(s) 693, 892
Bsp143I GATC 7 cut(s) 153, 274, 451, 546, 572, 728, 976
BspACI CCGC 1 cut(s) 75
BspCNI CTCAG 4 cut(s) 300, 453, 487, 969
BspEI TCCGGA 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 62, 276, 574
BspPI GGATC 7 cut(s) 161, 269, 282, 541, 567, 580, 736
BspQI GCTCTTC 1 cut(s) 1006
BspTNI GGTCTC 2 cut(s) 457, 661
BsrDI GCAATG 1 cut(s) 657
BsrGI TGTACA 2 cut(s) 693, 892
BsrI ACTGG 3 cut(s) 312, 332, 798
BssECI CCNNGG 2 cut(s) 78, 724
BssMI GATC 7 cut(s) 153, 274, 451, 546, 572, 728, 976
BssNAI GTATAC 1 cut(s) 512
BssT1I CCWWGG 1 cut(s) 724
Bst1107I GTATAC 1 cut(s) 512
Bst2UI CCWGG 1 cut(s) 468
Bst6I CTCTTC 1 cut(s) 1006
BstAUI TGTACA 2 cut(s) 693, 892
BstC8I GCNNGC 2 cut(s) 847, 864
BstDEI CTNAG 4 cut(s) 287, 461, 495, 956
BstEII GGTNACC 1 cut(s) 802
BstF5I GGATG 3 cut(s) 139, 158, 259
BstKTI GATC 7 cut(s) 156, 277, 454, 549, 575, 731, 979
BstMAI GTCTC 3 cut(s) 194, 457, 661
BstMBI GATC 7 cut(s) 153, 274, 451, 546, 572, 728, 976
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 3 cut(s) 490, 620, 631
BstPI GGTNACC 1 cut(s) 802
BstSCI CCNGG 1 cut(s) 466
BstX2I RGATCY 5 cut(s) 153, 274, 546, 572, 728
BstXI CCANNNNNNTGG 1 cut(s) 422
BstYI RGATCY 5 cut(s) 153, 274, 546, 572, 728
BstZ17I GTATAC 1 cut(s) 512
BtsCI GGATG 3 cut(s) 139, 158, 259
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 847, 864
Csp6I GTAC 4 cut(s) 625, 687, 694, 893
CviAII CATG 4 cut(s) 125, 487, 617, 628
CviJI RGCY 7 cut(s) 83, 112, 449, 557, 814, 849, 1016
CviKI_1 RGCY 7 cut(s) 83, 112, 449, 557, 814, 849, 1016
CviQI GTAC 4 cut(s) 625, 687, 694, 893
DdeI CTNAG 4 cut(s) 287, 461, 495, 956
DpnI GATC 7 cut(s) 155, 276, 453, 548, 574, 730, 978
DpnII GATC 7 cut(s) 153, 274, 451, 546, 572, 728, 976
Eam1104I CTCTTC 1 cut(s) 1006
EarI CTCTTC 1 cut(s) 1006
Eco130I CCWWGG 1 cut(s) 724
Eco31I GGTCTC 2 cut(s) 457, 661
Eco88I CYCGRG 1 cut(s) 857
Eco91I GGTNACC 1 cut(s) 802
EcoO65I GGTNACC 1 cut(s) 802
EcoRI GAATTC 2 cut(s) 400, 672
EcoRII CCWGG 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 724
EcoT22I ATGCAT 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 724
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 4 cut(s) 128, 490, 620, 631
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FatI CATG 4 cut(s) 124, 486, 616, 627
FauI CCCGC 1 cut(s) 82
FblI GTMKAC 2 cut(s) 312, 511
FokI GGATG 3 cut(s) 145, 146, 246
FspBI CTAG 3 cut(s) 317, 770, 912
GsuI CTGGAG 2 cut(s) 489, 815
HapII CCGG 2 cut(s) 371, 647
Hin1II CATG 4 cut(s) 128, 490, 620, 631
HinfI GANTC 2 cut(s) 283, 409
HpaII CCGG 2 cut(s) 371, 647
HphI GGTGA 3 cut(s) 404, 891, 898
Hpy166II GTNNAC 2 cut(s) 313, 512
Hpy188I TCNGA 5 cut(s) 149, 274, 462, 496, 959
Hpy188III TCNNGA 7 cut(s) 191, 371, 565, 576, 664, 741, 1023
Hpy8I GTNNAC 2 cut(s) 313, 512
HpyAV CCTTC 3 cut(s) 188, 343, 389
HpyCH4IV ACGT 2 cut(s) 10, 187
HpyCH4V TGCA 7 cut(s) 17, 168, 174, 259, 345, 616, 931
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 4 cut(s) 287, 461, 495, 956
HpySE526I ACGT 2 cut(s) 10, 187
Hsp92II CATG 4 cut(s) 128, 490, 620, 631
Kpn2I TCCGGA 1 cut(s) 370
Kzo9I GATC 7 cut(s) 153, 274, 451, 546, 572, 728, 976
LguI GCTCTTC 1 cut(s) 1006
LmnI GCTCC 2 cut(s) 373, 997
LweI GCATC 2 cut(s) 268, 300
MaeI CTAG 3 cut(s) 317, 770, 912
MaeII ACGT 2 cut(s) 10, 187
MaeIII GTNAC 2 cut(s) 361, 802
MalI GATC 7 cut(s) 155, 276, 453, 548, 574, 730, 978
MboI GATC 7 cut(s) 153, 274, 451, 546, 572, 728, 976
MboII GAAGA 3 cut(s) 889, 986, 1023
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 5 cut(s) 153, 274, 546, 572, 728
MhlI GDGCHC 1 cut(s) 864
MmeI TCCRAC 2 cut(s) 252, 372
Mph1103I ATGCAT 1 cut(s) 618
MroI TCCGGA 1 cut(s) 370
MseI TTAA 2 cut(s) 177, 483
MslI CAYNNNNRTG 1 cut(s) 485
MspI CCGG 2 cut(s) 371, 647
MspR9I CCNGG 1 cut(s) 468
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 7 cut(s) 153, 274, 451, 546, 572, 728, 976
NlaIII CATG 4 cut(s) 128, 490, 620, 631
NlaIV GGNNCC 3 cut(s) 62, 276, 574
NmeAIII GCCGAG 2 cut(s) 59, 325
NsiI ATGCAT 1 cut(s) 618
NspI RCATGY 3 cut(s) 490, 620, 631
PaeR7I CTCGAG 1 cut(s) 857
PciSI GCTCTTC 1 cut(s) 1006
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 283, 409
Psp6I CCWGG 1 cut(s) 466
PspEI GGTNACC 1 cut(s) 802
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 3 cut(s) 62, 276, 574
PspXI VCTCGAGB 1 cut(s) 857
PsuI RGATCY 5 cut(s) 153, 274, 546, 572, 728
RsaI GTAC 4 cut(s) 626, 688, 695, 894
RsaNI GTAC 4 cut(s) 625, 687, 694, 893
RseI CAYNNNNRTG 1 cut(s) 485
SapI GCTCTTC 1 cut(s) 1006
SaqAI TTAA 2 cut(s) 177, 483
Sau3AI GATC 7 cut(s) 153, 274, 451, 546, 572, 728, 976
ScaI AGTACT 1 cut(s) 688
ScrFI CCNGG 1 cut(s) 468
SduI GDGCHC 1 cut(s) 864
SfaNI GCATC 2 cut(s) 268, 300
Sfr274I CTCGAG 1 cut(s) 857
SlaI CTCGAG 1 cut(s) 857
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
SsiI CCGC 1 cut(s) 75
SspI AATATT 2 cut(s) 97, 121
SspMI CTAG 3 cut(s) 317, 770, 912
StyD4I CCNGG 1 cut(s) 466
StyI CCWWGG 1 cut(s) 724
TaiI ACGT 2 cut(s) 13, 190
TaqI TCGA 2 cut(s) 192, 858
TatI WGTACW 3 cut(s) 686, 693, 892
TfiI GAWTC 2 cut(s) 283, 409
Tru1I TTAA 2 cut(s) 177, 483
Tru9I TTAA 2 cut(s) 177, 483
TscAI CASTG 1 cut(s) 285
TspDTI ATGAA 5 cut(s) 59, 113, 222, 590, 776
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 285
XapI RAATTY 2 cut(s) 400, 672
XceI RCATGY 3 cut(s) 490, 620, 631
XhoI CTCGAG 1 cut(s) 857
XmiI GTMKAC 2 cut(s) 312, 511
XspI CTAG 3 cut(s) 317, 770, 912
ZrmI AGTACT 1 cut(s) 688
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.