Rorug07G0093700

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000155
Physical Location & Seq
Forward (+)
7333124 .. 7335816
2693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0093700.1

Sequence Viewer

Length: 783 bp
ATGGCCATTCTCTGGCTGATTCTTCTCTCCTTCGTTGCTTTTGGTGACGATGTTCCTGTGGTAGTTTCGAGTTTTGGTGGCGAGGGTGATGTCGATCTTGATGACTTTGCTTGGTGGGTCGATCGGCTGTCTCGATCGGGGCCGAGTGAAGGTGGTGAGATCTGGTTTGGTGGTGATGAGGGATCTACCCTTGATCACCATCAGATCTGGTTCGATGGTCCCGTTGACACTGATGATGGATCTGGTCTTGATCCGTCGATTGATGGTGGTGGTAGCGTCCAAAGCGGCAGCCAACTTGATTCTGTTGAAGGTGGTAAGGCTTGGTGGCAGGGCTGTGTGCATCCAAATGAGGAATCTAGGCGAGCTGCTGGCTTCGTCTTCTGCTCCAGTTTCTCGTTGTCTTCCGACGTTGGTAGTGGAGCAGTGGGCTGCCTTTGCTTCAAGATGGCGGAGTATCAGGTCTTCGATGGTGGAGGTGGTACTTTGGCTGGAGGCGGCGATGGTTTCTGTTCGGAAACTGATCCCTTTAGGGTGGCGATCCACGGGGGTGGCGGCGGCAGCTTGGACGGCTGTGATGGAGTGCTTGGGGTTCCCTTAGCAATTTCGCCCTATTGGGCCAGCTGGGCCTGGGGCTGTTTGGAGGGTTTGTGGTATGGCTGGAAGTGGGTGGGCTGGGTCCTACAACTTCCGGCTTGGGCTCTGTCTGCTAGGGATTGGGGCTGGATTACCCTCTTGCTAGGGGATTGGATGTTGTGGGTCTCTATGGCCCATAGTGCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

260

Amino Acids

27.59

Weight (kDa)

4.05

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 12
AciI CCGC 5 cut(s) 285, 449, 495, 552, 555
AclWI GGATC 5 cut(s) 190, 245, 247, 515, 532
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 2 cut(s) 12, 149
AgsI TTSAA 2 cut(s) 308, 442
AjnI CCWGG 1 cut(s) 626
AleI CACNNNNGTG 1 cut(s) 546
AluBI AGCT 3 cut(s) 365, 561, 621
AluI AGCT 3 cut(s) 365, 561, 621
Alw26I GTCTC 2 cut(s) 135, 763
AlwI GGATC 5 cut(s) 190, 245, 247, 515, 532
AoxI GGCC 5 cut(s) 3, 140, 615, 624, 765
ApeKI GCWGC 4 cut(s) 288, 365, 429, 558
AspS9I GGNCC 6 cut(s) 140, 218, 615, 624, 676, 766
AsuHPI GGTGA 5 cut(s) 56, 98, 167, 185, 188
AvaII GGWCC 2 cut(s) 218, 676
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 700
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BbsI GAAGAC 3 cut(s) 370, 393, 454
BbvI GCAGC 4 cut(s) 300, 352, 416, 570
BccI CCATC 8 cut(s) 207, 209, 230, 257, 439, 461, 494, 569
BceAI ACGGC 2 cut(s) 583, 761
BciT130I CCWGG 1 cut(s) 628
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 135, 763
BfaI CTAG 3 cut(s) 357, 708, 737
BglI GCCNNNNNGGC 1 cut(s) 623
BglII AGATCT 2 cut(s) 159, 204
BisI GCNGC 8 cut(s) 286, 289, 366, 430, 496, 553, 556, 559
BlsI GCNGC 8 cut(s) 287, 290, 367, 431, 497, 554, 557, 560
Bme1390I CCNGG 1 cut(s) 628
Bme18I GGWCC 2 cut(s) 218, 676
BmgT120I GGNCC 6 cut(s) 140, 218, 615, 624, 676, 766
BmiI GGNNCC 4 cut(s) 141, 220, 591, 677
BmrFI CCNGG 1 cut(s) 628
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 3 cut(s) 370, 393, 454
BpmI CTGGAG 2 cut(s) 370, 510
Bpu10I CCTNAGC 1 cut(s) 595
BsaBI GATNNNNATC 2 cut(s) 93, 198
BsaI GGTCTC 1 cut(s) 763
BsaJI CCNNGG 2 cut(s) 541, 627
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 149
Bse1I ACTGG 1 cut(s) 387
Bse8I GATNNNNATC 2 cut(s) 93, 198
BseBI CCWGG 1 cut(s) 628
BseDI CCNNGG 2 cut(s) 541, 627
BseGI GGATG 2 cut(s) 340, 753
BseJI GATNNNNATC 2 cut(s) 93, 198
BseLI CCNNNNNNNGG 2 cut(s) 12, 149
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 4 cut(s) 300, 352, 416, 570
BseYI CCCAGC 2 cut(s) 621, 672
Bsh1285I CGRYCG 2 cut(s) 124, 137
BshFI GGCC 5 cut(s) 5, 142, 617, 626, 767
BsiEI CGRYCG 2 cut(s) 124, 137
BsiSI CCGG 1 cut(s) 689
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 12, 149
BsmAI GTCTC 2 cut(s) 135, 763
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 5 cut(s) 5, 142, 617, 626, 767
Bso31I GGTCTC 1 cut(s) 763
Bsp1286I GDGCHC 1 cut(s) 700
BspACI CCGC 5 cut(s) 285, 449, 495, 552, 555
BspANI GGCC 5 cut(s) 5, 142, 617, 626, 767
BspLI GGNNCC 4 cut(s) 141, 220, 591, 677
BspPI GGATC 5 cut(s) 190, 245, 247, 515, 532
BspTNI GGTCTC 1 cut(s) 763
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 2 cut(s) 541, 627
Bst2UI CCWGG 1 cut(s) 628
BstC8I GCNNGC 3 cut(s) 363, 370, 619
BstDEI CTNAG 1 cut(s) 595
BstDSI CCRYGG 1 cut(s) 541
BstF5I GGATG 2 cut(s) 340, 753
BstMAI GTCTC 2 cut(s) 135, 763
BstMCI CGRYCG 2 cut(s) 124, 137
BstMWI GCNNNNNNNGC 7 cut(s) 282, 435, 558, 567, 623, 704, 773
BstNI CCWGG 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 626
BstV1I GCAGC 4 cut(s) 300, 352, 416, 570
BstV2I GAAGAC 3 cut(s) 370, 393, 454
BstX2I RGATCY 4 cut(s) 159, 182, 204, 239
BstXI CCANNNNNNTGG 1 cut(s) 548
BstYI RGATCY 4 cut(s) 159, 182, 204, 239
BsuRI GGCC 5 cut(s) 5, 142, 617, 626, 767
BtgI CCRYGG 1 cut(s) 541
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 2 cut(s) 340, 753
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 2 cut(s) 228, 429
Cac8I GCNNGC 3 cut(s) 363, 370, 619
Cfr13I GGNCC 6 cut(s) 140, 218, 615, 624, 676, 766
CseI GACGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 480
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 700
Eco31I GGTCTC 1 cut(s) 763
Eco47I GGWCC 2 cut(s) 218, 676
EcoO109I RGGNCCY 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 626
EcoT38I GRGCYC 1 cut(s) 700
FaiI YATR 3 cut(s) 654, 764, 771
FaqI GGGAC 1 cut(s) 204
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 8 cut(s) 286, 289, 366, 430, 496, 553, 556, 559
FokI GGATG 2 cut(s) 327, 760
FriOI GRGCYC 1 cut(s) 700
Fsp4HI GCNGC 8 cut(s) 286, 289, 366, 430, 496, 553, 556, 559
FspBI CTAG 3 cut(s) 357, 708, 737
GluI GCNGC 8 cut(s) 286, 289, 366, 430, 496, 553, 556, 559
GsaI CCCAGC 2 cut(s) 625, 676
GsuI CTGGAG 2 cut(s) 370, 510
HaeIII GGCC 5 cut(s) 5, 142, 617, 626, 767
HapII CCGG 1 cut(s) 689
HgaI GACGC 1 cut(s) 265
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 3 cut(s) 19, 299, 353
HpaII CCGG 1 cut(s) 689
HphI GGTGA 5 cut(s) 56, 98, 167, 185, 188
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 3 cut(s) 204, 406, 514
Hpy188III TCNNGA 4 cut(s) 98, 132, 248, 442
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 2 cut(s) 259, 410
HpyAV CCTTC 3 cut(s) 40, 143, 302
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 1 cut(s) 340
HpyF10VI GCNNNNNNNGC 7 cut(s) 282, 435, 558, 567, 623, 704, 773
HpyF3I CTNAG 1 cut(s) 595
HpySE526I ACGT 1 cut(s) 408
Ksp22I TGATCA 1 cut(s) 193
LmnI GCTCC 2 cut(s) 389, 419
Lsp1109I GCAGC 4 cut(s) 300, 352, 416, 570
LweI GCATC 1 cut(s) 349
MaeI CTAG 3 cut(s) 357, 708, 737
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 44
MboII GAAGA 4 cut(s) 14, 370, 393, 454
MflI RGATCY 4 cut(s) 159, 182, 204, 239
MhlI GDGCHC 1 cut(s) 700
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 600
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 7 cut(s) 76, 172, 343, 467, 485, 634, 740
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 781
MslI CAYNNNNRTG 2 cut(s) 345, 546
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 621
MspI CCGG 1 cut(s) 689
MspR9I CCNGG 1 cut(s) 628
MvaI CCWGG 1 cut(s) 628
MwoI GCNNNNNNNGC 7 cut(s) 282, 435, 558, 567, 623, 704, 773
NlaIV GGNNCC 4 cut(s) 141, 220, 591, 677
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 44
OliI CACNNNNGTG 1 cut(s) 546
PcsI WCGNNNNNNNCGW 2 cut(s) 130, 219
PfeI GAWTC 3 cut(s) 19, 299, 353
PflMI CCANNNNNTGG 1 cut(s) 12
PkrI GCNGC 8 cut(s) 287, 290, 367, 431, 497, 554, 557, 560
Ple19I CGATCG 2 cut(s) 124, 137
PpuMI RGGWCCY 1 cut(s) 676
Psp5II RGGWCCY 1 cut(s) 676
Psp6I CCWGG 1 cut(s) 626
PspFI CCCAGC 2 cut(s) 621, 672
PspGI CCWGG 1 cut(s) 626
PspN4I GGNNCC 4 cut(s) 141, 220, 591, 677
PspPI GGNCC 6 cut(s) 140, 218, 615, 624, 676, 766
PspPPI RGGWCCY 1 cut(s) 676
PsuI RGATCY 4 cut(s) 159, 182, 204, 239
PvuI CGATCG 2 cut(s) 124, 137
PvuII CAGCTG 1 cut(s) 621
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
RseI CAYNNNNRTG 2 cut(s) 345, 546
SaqAI TTAA 1 cut(s) 781
SatI GCNGC 8 cut(s) 286, 289, 366, 430, 496, 553, 556, 559
Sau96I GGNCC 6 cut(s) 140, 218, 615, 624, 676, 766
ScrFI CCNGG 1 cut(s) 628
SduI GDGCHC 1 cut(s) 700
SetI ASST 8 cut(s) 154, 313, 367, 411, 462, 478, 563, 623
SfaNI GCATC 1 cut(s) 349
SfiI GGCCNNNNNGGCC 1 cut(s) 623
SinI GGWCC 2 cut(s) 218, 676
SmiMI CAYNNNNRTG 2 cut(s) 345, 546
Sse9I AATT 1 cut(s) 600
SsiI CCGC 5 cut(s) 285, 449, 495, 552, 555
SspMI CTAG 3 cut(s) 357, 708, 737
StyD4I CCNGG 1 cut(s) 626
TaiI ACGT 1 cut(s) 411
TaqI TCGA 7 cut(s) 68, 93, 120, 133, 213, 257, 465
TasI AATT 1 cut(s) 600
TauI GCSGC 4 cut(s) 288, 498, 555, 558
TfiI GAWTC 3 cut(s) 19, 299, 353
Tru1I TTAA 1 cut(s) 781
Tru9I TTAA 1 cut(s) 781
TscAI CASTG 2 cut(s) 235, 429
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 4 cut(s) 288, 365, 429, 558
Tsp45I GTSAC 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 2 cut(s) 235, 429
Van91I CCANNNNNTGG 1 cut(s) 12
VpaK11BI GGWCC 2 cut(s) 218, 676
XspI CTAG 3 cut(s) 357, 708, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.