RLG00000023965

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000155
Physical Location & Seq
Reverse (-)
30532322 .. 30538369
6048 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023965

Sequence Viewer

Length: 483 bp
ATGCGTGATGAGCAGTTTCGATTCGCCTCGTGGATCCAGAATGCTGTAAGGTGTAATGCCGAAGCTATGTTTAAGGGAGGCTCCATTCCATTACCATTAGATGAGATTAGTAATTTGGGCATGCATATTGAAAGCTTGGGTGATGGTCTAGTCCCGGCAATGGTCTCTTTTCTCAGAGGAATGACTAATTTGAATACTCTCTGGGTAAAATCTGCCAATAGGCCCAAAAAACCATCCTCTGCATCTGGGTTTAAGATGGGTTTTTGGAAATCCCAAAGGCTTGCTTTCGTTTCTCAACTTAAGGAGGTGATGCTTTTATCAGGGTACAAAAAGCAAGCTTTTGAATCTGCCATCGCATTATGCAGCTGGTTTGATATTGGTTGCGTGCTGCGCGGTGGAACAACAAGTAACATTGTCACTTATATCGCATGGGATATGCAGCTCGGGAGTTTGCCAAGTAAGGGGTTAAGCCAGGCGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

161

Amino Acids

17.63

Weight (kDa)

9.47

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 393
AciI CCGC 1 cut(s) 393
AclWI GGATC 2 cut(s) 28, 41
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 160, 461
AflII CTTAAG 1 cut(s) 299
AgsI TTSAA 3 cut(s) 131, 193, 344
AjnI CCWGG 1 cut(s) 471
AluBI AGCT 5 cut(s) 65, 135, 338, 366, 442
AluI AGCT 5 cut(s) 65, 135, 338, 366, 442
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 28, 41
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 3 cut(s) 363, 388, 439
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 152, 319
AvaI CYCGRG 1 cut(s) 443
BamHI GGATCC 1 cut(s) 33
BauI CACGAG 1 cut(s) 28
BbvI GCAGC 3 cut(s) 375, 375, 451
BccI CCATC 4 cut(s) 137, 241, 250, 359
BciT130I CCWGG 1 cut(s) 473
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 149, 481
BfrI CTTAAG 1 cut(s) 299
BisI GCNGC 3 cut(s) 364, 389, 440
BlsI GCNGC 3 cut(s) 365, 390, 441
Bme1390I CCNGG 2 cut(s) 155, 473
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 35, 82
BmrFI CCNGG 2 cut(s) 155, 473
BmsI GCATC 2 cut(s) 251, 300
BpuMI CCSGG 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 461
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 473
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 160, 461
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 187
BseXI GCAGC 3 cut(s) 375, 375, 451
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 160, 461
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 443
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 393
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 2 cut(s) 35, 82
BspPI GGATC 2 cut(s) 28, 41
BspTI CTTAAG 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 165
BssMI GATC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 473
BstAFI CTTAAG 1 cut(s) 299
BstC8I GCNNGC 4 cut(s) 122, 282, 336, 386
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 10, 390
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 153, 471
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 3 cut(s) 375, 375, 451
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 1 cut(s) 223
BtgZI GCGATG 1 cut(s) 337
BtsCI GGATG 1 cut(s) 233
Cac8I GCNNGC 4 cut(s) 122, 282, 336, 386
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 325
CviAII CATG 2 cut(s) 121, 429
CviJI RGCY 9 cut(s) 65, 81, 135, 223, 280, 338, 366, 442, 471
CviKI_1 RGCY 9 cut(s) 65, 81, 135, 223, 280, 338, 366, 442, 471
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 126
FaeI CATG 2 cut(s) 124, 432
FaiI YATR 7 cut(s) 68, 122, 126, 361, 423, 430, 437
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 120, 428
Fnu4HI GCNGC 3 cut(s) 364, 389, 440
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 364, 389, 440
FspBI CTAG 2 cut(s) 149, 481
GlaI GCGC 1 cut(s) 392
GluI GCNGC 3 cut(s) 364, 389, 440
HaeIII GGCC 1 cut(s) 223
HapII CCGG 1 cut(s) 155
HhaI GCGC 1 cut(s) 393
Hin1II CATG 2 cut(s) 124, 432
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HindIII AAGCTT 2 cut(s) 133, 336
HinfI GANTC 2 cut(s) 21, 344
HpaII CCGG 1 cut(s) 155
HphI GGTGA 2 cut(s) 152, 319
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 37, 445
HpyCH4V TGCA 4 cut(s) 124, 242, 363, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 390
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 2 cut(s) 124, 432
HspAI GCGC 1 cut(s) 391
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 7 cut(s) 50, 168, 187, 231, 306, 352, 458
Lsp1109I GCAGC 3 cut(s) 375, 375, 451
LweI GCATC 2 cut(s) 251, 300
MaeI CTAG 2 cut(s) 149, 481
MaeIII GTNAC 2 cut(s) 407, 415
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MflI RGATCY 1 cut(s) 33
MluCI AATT 2 cut(s) 112, 187
MnlI CCTC 5 cut(s) 37, 71, 170, 247, 298
Mph1103I ATGCAT 1 cut(s) 126
MseI TTAA 4 cut(s) 72, 252, 300, 467
MspA1I CMGCKG 1 cut(s) 366
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 155, 473
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 1 cut(s) 473
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 10, 390
NciI CCSGG 1 cut(s) 155
NdeII GATC 1 cut(s) 33
NlaIII CATG 2 cut(s) 124, 432
NlaIV GGNNCC 2 cut(s) 35, 82
NmuCI GTSAC 1 cut(s) 415
NsiI ATGCAT 1 cut(s) 126
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 2 cut(s) 21, 344
PkrI GCNGC 3 cut(s) 365, 390, 441
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 2 cut(s) 35, 82
PspPI GGNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 366
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 4 cut(s) 72, 252, 300, 467
SatI GCNGC 3 cut(s) 364, 389, 440
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 222
ScrFI CCNGG 2 cut(s) 155, 473
SetI ASST 7 cut(s) 53, 67, 137, 309, 340, 368, 444
SfaNI GCATC 2 cut(s) 251, 300
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 124
Sse9I AATT 2 cut(s) 112, 187
SsiI CCGC 1 cut(s) 393
SspMI CTAG 2 cut(s) 149, 481
StyD4I CCNGG 2 cut(s) 153, 471
TaqI TCGA 1 cut(s) 19
TasI AATT 2 cut(s) 112, 187
TfiI GAWTC 2 cut(s) 21, 344
Tru1I TTAA 4 cut(s) 72, 252, 300, 467
Tru9I TTAA 4 cut(s) 72, 252, 300, 467
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 3 cut(s) 363, 388, 439
Tsp45I GTSAC 1 cut(s) 415
Vha464I CTTAAG 1 cut(s) 299
XceI RCATGY 1 cut(s) 124
XspI CTAG 2 cut(s) 149, 481
Zsp2I ATGCAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.