Rmu_co8482831.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8482831.1
OG0000155
Physical Location & Seq
Reverse (-)
599 .. 1624
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8482831.1_g000001.1.cds

Sequence Viewer

Length: 939 bp
atggaacgccagcatagggtattggcaactacaagtaatcaaggccaaggtgctagcagtgagagtttggttgatagatttagttgtcttccggaagaagttgtctgtcacattctttcctatctcaatgcattggatctcattcgagcgagcagtgtgtcaaaacgatgcagaatgttatatgtttcagtcccgggattaaatttcaatgtaaatacgctgcccggagggaaatgctggtggaagcgatcaaaattgttgaatcatttggataggttattgattcaacgcgagggtagcaagatagaaaggtttcgtatcagttgggtttttgaaggagtaactgcatgtaactgtgaggagcattgtcgagtgatcacatggatcaatactgctgtgaagtgtaatgttgaagagtccctaacgctggacttgaagttctgtgttcttaaagcgccctcaatcaccatttgcactaatctccaatccttactattaagaagtgttatcattgaggaggatttttttaaatggatatcgagttcatgccaatgcatcaaggagttaactattgactgtgttctaaggccgaacagtatctgcattgagagcccatctttggaatccattcattttgtgtttgtgggtagacgtcaacaatacgaagacattgatgctcttagcatttctggtgaaaatcttcatcgtatacatattgagcatattgacctgagatcttcagcacgccaccattcattatatattgtggctccaaatctcaaatatttgaatttaactgggaatgttgctcgtggtctatctgtggagaaattcatacattcagaagaagctatgatatttctcaacccggggaagatggttttgacaaagtatttgaagtggttagctgtatacttggggttaaagttcttcatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

312

Amino Acids

35.67

Weight (kDa)

8.5

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 655
AccI GTMKAC 3 cut(s) 649, 709, 912
AccII CGCG 1 cut(s) 291
AccIII TCCGGA 1 cut(s) 91
AclWI GGATC 2 cut(s) 144, 392
AcsI RAATTY 3 cut(s) 202, 790, 830
AcuI CTGAAG 1 cut(s) 723
AcyI GRCGYC 1 cut(s) 652
AfiI CCNNNNNNNGG 3 cut(s) 16, 427, 619
AgsI TTSAA 8 cut(s) 208, 262, 287, 335, 413, 436, 790, 898
AloI GAACNNNNNNTCC 4 cut(s) 422, 454, 526, 558
AluBI AGCT 2 cut(s) 851, 908
AluI AGCT 2 cut(s) 851, 908
AlwI GGATC 2 cut(s) 144, 392
AlwNI CAGNNNCTG 1 cut(s) 600
Ama87I CYCGRG 2 cut(s) 193, 868
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 2 cut(s) 43, 587
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 3 cut(s) 202, 790, 830
ArsI GACNNNNNNTTYG 2 cut(s) 877, 909
Asp700I GAANNNNTTC 3 cut(s) 312, 627, 699
AspLEI GCGC 1 cut(s) 457
AsuC2I CCSGG 5 cut(s) 194, 195, 225, 869, 870
AsuHPI GGTGA 2 cut(s) 457, 704
AsuNHI GCTAGC 1 cut(s) 53
AvaI CYCGRG 2 cut(s) 193, 868
BanII GRGCYC 1 cut(s) 614
BauI CACGAG 1 cut(s) 810
BbsI GAAGAC 2 cut(s) 80, 672
BbvI GCAGC 1 cut(s) 207
BccI CCATC 2 cut(s) 622, 871
BclI TGATCA 1 cut(s) 375
BcnI CCSGG 5 cut(s) 194, 195, 225, 869, 870
BfaI CTAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 458
BglII AGATCT 1 cut(s) 734
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 5 cut(s) 194, 195, 225, 869, 870
BmeT110I CYCGRG 2 cut(s) 193, 868
BmiI GGNNCC 1 cut(s) 771
BmrFI CCNGG 5 cut(s) 194, 195, 225, 869, 870
BmrI ACTGGG 1 cut(s) 807
BmsI GCATC 3 cut(s) 158, 564, 664
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 807
BpiI GAAGAC 2 cut(s) 80, 672
BpuMI CCSGG 5 cut(s) 194, 195, 225, 869, 870
BsaHI GRCGYC 1 cut(s) 652
BsaJI CCNNGG 4 cut(s) 46, 193, 868, 869
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 427, 619
Bse1I ACTGG 1 cut(s) 802
BseAI TCCGGA 1 cut(s) 91
BseDI CCNNGG 4 cut(s) 46, 193, 868, 869
BseLI CCNNNNNNNGG 3 cut(s) 16, 427, 619
BseMII CTCAG 1 cut(s) 722
BseNI ACTGG 1 cut(s) 802
BseRI GAGGAG 2 cut(s) 374, 530
BseXI GCAGC 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 2 cut(s) 45, 589
BsiHKCI CYCGRG 2 cut(s) 193, 868
BsiSI CCGG 4 cut(s) 92, 194, 225, 869
BslFI GGGAC 2 cut(s) 176, 403
BslI CCNNNNNNNGG 3 cut(s) 16, 427, 619
BsmFI GGGAC 2 cut(s) 176, 403
BsnI GGCC 2 cut(s) 45, 589
BsoBI CYCGRG 2 cut(s) 193, 868
Bsp1286I GDGCHC 1 cut(s) 614
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 5 cut(s) 136, 248, 375, 384, 734
BspANI GGCC 2 cut(s) 45, 589
BspCNI CTCAG 1 cut(s) 723
BspEI TCCGGA 1 cut(s) 91
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 771
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 2 cut(s) 144, 392
BsrI ACTGG 1 cut(s) 802
BssECI CCNNGG 4 cut(s) 46, 193, 868, 869
BssMI GATC 5 cut(s) 136, 248, 375, 384, 734
BssNAI GTATAC 2 cut(s) 710, 913
BssNI GRCGYC 1 cut(s) 652
BssSI CACGAG 1 cut(s) 810
BssT1I CCWWGG 1 cut(s) 46
Bst1107I GTATAC 2 cut(s) 710, 913
Bst2BI CACGAG 1 cut(s) 810
Bst4CI ACNGT 3 cut(s) 356, 578, 596
Bst6I CTCTTC 1 cut(s) 408
BstACI GRCGYC 1 cut(s) 652
BstC8I GCNNGC 4 cut(s) 11, 55, 151, 745
BstDEI CTNAG 3 cut(s) 584, 680, 731
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 5 cut(s) 139, 251, 378, 387, 737
BstMBI GATC 5 cut(s) 136, 248, 375, 384, 734
BstMWI GCNNNNNNNGC 2 cut(s) 297, 609
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 5 cut(s) 192, 193, 223, 867, 868
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 207
BstV2I GAAGAC 2 cut(s) 80, 672
BstX2I RGATCY 2 cut(s) 136, 734
BstYI RGATCY 2 cut(s) 136, 734
BstZ17I GTATAC 2 cut(s) 710, 913
BsuRI GGCC 2 cut(s) 45, 589
BtsI GCAGTG 2 cut(s) 64, 160
BtsIMutI CAGTG 2 cut(s) 64, 160
Cac8I GCNNGC 4 cut(s) 11, 55, 151, 745
CaiI CAGNNNCTG 1 cut(s) 600
CfoI GCGC 1 cut(s) 457
Cfr9I CCCGGG 2 cut(s) 193, 868
CviAII CATG 3 cut(s) 348, 381, 546
CviJI RGCY 6 cut(s) 45, 589, 612, 770, 851, 908
CviKI_1 RGCY 6 cut(s) 45, 589, 612, 770, 851, 908
DdeI CTNAG 3 cut(s) 584, 680, 731
DpnI GATC 5 cut(s) 138, 250, 377, 386, 736
DpnII GATC 5 cut(s) 136, 248, 375, 384, 734
DraI TTTAAA 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 614
Eco32I GATATC 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 723
Eco88I CYCGRG 2 cut(s) 193, 868
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 46
EcoT22I ATGCAT 2 cut(s) 133, 557
EcoT38I GRGCYC 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 3 cut(s) 351, 384, 549
FaqI GGGAC 2 cut(s) 176, 403
FatI CATG 3 cut(s) 347, 380, 545
FbaI TGATCA 1 cut(s) 375
FblI GTMKAC 3 cut(s) 649, 709, 912
Fnu4HI GCNGC 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 221
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 2 cut(s) 45, 589
HapII CCGG 4 cut(s) 92, 194, 225, 869
HhaI GCGC 1 cut(s) 457
Hin1I GRCGYC 1 cut(s) 652
Hin1II CATG 3 cut(s) 351, 384, 549
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HincII GTYRAC 2 cut(s) 567, 656
HindII GTYRAC 2 cut(s) 567, 656
HinfI GANTC 4 cut(s) 262, 283, 416, 623
HpaI GTTAAC 1 cut(s) 567
HpaII CCGG 4 cut(s) 92, 194, 225, 869
HphI GGTGA 2 cut(s) 457, 704
Hpy166II GTNNAC 5 cut(s) 567, 650, 656, 710, 913
Hpy188I TCNGA 1 cut(s) 844
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 5 cut(s) 567, 650, 656, 710, 913
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 3 cut(s) 356, 578, 596
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 6 cut(s) 131, 171, 347, 474, 555, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 609
HpyF3I CTNAG 3 cut(s) 584, 680, 731
HpySE526I ACGT 1 cut(s) 652
Hsp92I GRCGYC 1 cut(s) 652
Hsp92II CATG 3 cut(s) 351, 384, 549
HspAI GCGC 1 cut(s) 455
Kpn2I TCCGGA 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 375
KspAI GTTAAC 1 cut(s) 567
Kzo9I GATC 5 cut(s) 136, 248, 375, 384, 734
LmnI GCTCC 2 cut(s) 361, 775
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 3 cut(s) 158, 564, 664
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 3 cut(s) 107, 340, 350
MalI GATC 5 cut(s) 138, 250, 377, 386, 736
MboI GATC 5 cut(s) 136, 248, 375, 384, 734
MboII GAAGA 9 cut(s) 80, 107, 425, 677, 692, 729, 857, 886, 922
MflI RGATCY 2 cut(s) 136, 734
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 4 cut(s) 202, 254, 790, 830
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 6 cut(s) 221, 286, 352, 469, 508, 511
Mph1103I ATGCAT 2 cut(s) 133, 557
MroI TCCGGA 1 cut(s) 91
MroXI GAANNNNTTC 3 cut(s) 312, 627, 699
MseI TTAA 7 cut(s) 200, 450, 497, 528, 566, 794, 923
MslI CAYNNNNRTG 1 cut(s) 550
MspI CCGG 4 cut(s) 92, 194, 225, 869
MspR9I CCNGG 5 cut(s) 194, 195, 225, 869, 870
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 297, 609
NciI CCSGG 5 cut(s) 194, 195, 225, 869, 870
NdeII GATC 5 cut(s) 136, 248, 375, 384, 734
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 3 cut(s) 351, 384, 549
NlaIV GGNNCC 1 cut(s) 771
NmuCI GTSAC 1 cut(s) 107
NsiI ATGCAT 2 cut(s) 133, 557
NspI RCATGY 1 cut(s) 351
PdmI GAANNNNTTC 3 cut(s) 312, 627, 699
PfeI GAWTC 3 cut(s) 262, 283, 623
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 771
PstNI CAGNNNCTG 1 cut(s) 600
PsuI RGATCY 2 cut(s) 136, 734
RseI CAYNNNNRTG 1 cut(s) 550
SaqAI TTAA 7 cut(s) 200, 450, 497, 528, 566, 794, 923
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 5 cut(s) 136, 248, 375, 384, 734
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 5 cut(s) 194, 195, 225, 869, 870
SduI GDGCHC 1 cut(s) 614
SetI ASST 7 cut(s) 52, 278, 314, 655, 732, 853, 910
SfaNI GCATC 3 cut(s) 158, 564, 664
SmaI CCCGGG 2 cut(s) 195, 870
SmiMI CAYNNNNRTG 1 cut(s) 550
Sse9I AATT 4 cut(s) 202, 254, 790, 830
SspI AATATT 1 cut(s) 785
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 5 cut(s) 192, 193, 223, 867, 868
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 3 cut(s) 356, 578, 596
TaiI ACGT 1 cut(s) 655
TaqI TCGA 3 cut(s) 145, 370, 539
TasI AATT 4 cut(s) 202, 254, 790, 830
TfiI GAWTC 3 cut(s) 262, 283, 623
Tru1I TTAA 7 cut(s) 200, 450, 497, 528, 566, 794, 923
Tru9I TTAA 7 cut(s) 200, 450, 497, 528, 566, 794, 923
TscAI CASTG 2 cut(s) 64, 160
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 6 cut(s) 534, 620, 692, 744, 823, 922
TspMI CCCGGG 2 cut(s) 193, 868
TspRI CASTG 2 cut(s) 64, 160
XapI RAATTY 3 cut(s) 202, 790, 830
XceI RCATGY 1 cut(s) 351
XmaI CCCGGG 2 cut(s) 193, 868
XmiI GTMKAC 3 cut(s) 649, 709, 912
XmnI GAANNNNTTC 3 cut(s) 312, 627, 699
XspI CTAG 1 cut(s) 54
ZraI GACGTC 1 cut(s) 653
Zsp2I ATGCAT 2 cut(s) 133, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.