Rorug03G0136900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000155
Physical Location & Seq
Forward (+)
11255820 .. 11260871
5052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0136900.1

Sequence Viewer

Length: 912 bp
ATGGAATCAAACTCAGCCCCTTATGCCCCATGTCCCTCACTACCAAATGTTCAAGAAATGGTGAGGACTGACCCTTTTCAGGTACCTGAAAAATACATCAGGAATGAAACAGATATTACAAAAGATGCAGATTTGTGTCCTCATCTTTCTTCTGAGGTTCCCATCATTGATCTTTCTCTGCTCTCAGAAGGGCACAAAGAGGAGCTCACCAAGCTAGACCAGGCTTGCAAGGAATGGGGTTTCTTTCAGATTAAACTGGATTTGCAGGTGGTAAATCACGGAGTGGCGACAGAAGTAACCAAGAGCTTGAAAGAAGCGGCGGAGAAGTTCTTTGAACTTCCATTAGAAGAGAAGAACAGAATTGCTATGCCATCAAATGACATACAAGGCTATGGCCATACCAATGTGGATCACAAGGTGCTGGATTGGTCCGACAAACTTGTTCTTGTCGTTTACCCACACCAGTACAGAAAGCTCGAGGTTTGGCCACCCACTCCATTCAAGGAGGCTATTGAGACATACTCTAGTGAAGTTAGAAGAGTTGGAGAGGAGCTTCTCAGGTCTCTATCGTTAATCATGGGGATGGAGAAGGATGCTGTTCTCGGACTACATCAAGAGTTGGTCCAACCTCTGTCTGTAGCCTACTATCCTCAGTGCTCAATGCCTGAGAAAGTACTTGGTCTAAGTGCACACTCAGACAAAGGGAGCTTAGCCATAGTTATGCAAGAAGATGATGTAATGGGACTACAAATCAAACACAACGAAAAATGGGTACCAATCAAGCCCATTCACGATGCCTTCATTGTGAATGTTGGAGATATTATTGAGAAATTGAACCCCTGGATCAAATGGTTCTTGCGTCACCGGGGTCTTTTCCGTTGTACAAGAAAGTCACCTATGGGGATTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

303

Amino Acids

34.59

Weight (kDa)

5.6

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 164 8.3e-25 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 211 - 293 5.6e-16 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 256
Acc36I ACCTGC 1 cut(s) 256
Acc65I GGTACC 2 cut(s) 82, 772
AccB1I GGYRCC 2 cut(s) 82, 772
AciI CCGC 2 cut(s) 317, 320
AclWI GGATC 2 cut(s) 417, 851
AcoI YGGCCR 2 cut(s) 394, 485
AdeI CACNNNGTG 2 cut(s) 283, 418
AfaI GTAC 5 cut(s) 84, 467, 675, 774, 883
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 5 cut(s) 53, 310, 335, 502, 835
AjnI CCWGG 2 cut(s) 219, 839
AluBI AGCT 6 cut(s) 205, 214, 306, 475, 553, 708
AluI AGCT 6 cut(s) 205, 214, 306, 475, 553, 708
Alw21I GWGCWC 3 cut(s) 207, 659, 691
Alw26I GTCTC 2 cut(s) 509, 567
Alw44I GTGCAC 1 cut(s) 687
AlwI GGATC 2 cut(s) 417, 851
Ama87I CYCGRG 1 cut(s) 476
AoxI GGCC 2 cut(s) 394, 485
ApaLI GTGCAC 1 cut(s) 687
Asp718I GGTACC 2 cut(s) 82, 772
AspS9I GGNCC 2 cut(s) 429, 622
AsuC2I CCSGG 1 cut(s) 866
AsuHPI GGTGA 4 cut(s) 73, 199, 854, 885
AvaI CYCGRG 1 cut(s) 476
AvaII GGWCC 2 cut(s) 429, 622
BaeGI GKGCMC 2 cut(s) 195, 691
BalI TGGCCA 2 cut(s) 396, 487
BanI GGYRCC 2 cut(s) 82, 772
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 3 cut(s) 207, 659, 691
BccI CCATC 3 cut(s) 170, 379, 577
BciT130I CCWGG 2 cut(s) 221, 841
BcnI CCSGG 1 cut(s) 866
BcoDI GTCTC 2 cut(s) 509, 567
BfaI CTAG 2 cut(s) 215, 525
BfmI CTRYAG 1 cut(s) 636
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 1 cut(s) 318
BlpI GCTNAGC 1 cut(s) 709
BlsI GCNGC 1 cut(s) 319
BmcAI AGTACT 1 cut(s) 675
Bme1390I CCNGG 3 cut(s) 221, 841, 866
Bme18I GGWCC 2 cut(s) 429, 622
BmeT110I CYCGRG 1 cut(s) 476
BmgT120I GGNCC 2 cut(s) 429, 622
BmiI GGNNCC 3 cut(s) 84, 159, 774
BmrFI CCNGG 3 cut(s) 221, 841, 866
BmsI GCATC 3 cut(s) 115, 583, 784
BplI GAGNNNNNCTC 2 cut(s) 506, 538
Bpu1102I GCTNAGC 1 cut(s) 709
BpuMI CCSGG 1 cut(s) 866
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 839, 865
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 261, 463
BseBI CCWGG 2 cut(s) 221, 841
BseDI CCNNGG 2 cut(s) 839, 865
BseGI GGATG 2 cut(s) 588, 598
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 7 cut(s) 27, 144, 198, 571, 657, 665, 708
BseNI ACTGG 2 cut(s) 261, 463
BseRI GAGGAG 2 cut(s) 215, 563
BseSI GKGCMC 2 cut(s) 195, 691
BshFI GGCC 2 cut(s) 396, 487
BshNI GGYRCC 2 cut(s) 82, 772
BsiHKAI GWGCWC 3 cut(s) 207, 659, 691
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 1 cut(s) 865
BslFI GGGAC 2 cut(s) 18, 756
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 509, 567
BsmFI GGGAC 2 cut(s) 18, 756
BsnI GGCC 2 cut(s) 396, 487
Bso31I GGTCTC 1 cut(s) 567
BsoBI CYCGRG 1 cut(s) 476
Bsp1286I GDGCHC 4 cut(s) 195, 207, 659, 691
Bsp1407I TGTACA 1 cut(s) 881
Bsp143I GATC 3 cut(s) 169, 409, 843
Bsp1720I GCTNAGC 1 cut(s) 709
BspACI CCGC 2 cut(s) 317, 320
BspANI GGCC 2 cut(s) 396, 487
BspCNI CTCAG 7 cut(s) 26, 145, 197, 570, 658, 664, 707
BspLI GGNNCC 3 cut(s) 84, 159, 774
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 2 cut(s) 417, 851
BspT107I GGYRCC 2 cut(s) 82, 772
BspTNI GGTCTC 1 cut(s) 567
BsrGI TGTACA 1 cut(s) 881
BsrI ACTGG 2 cut(s) 261, 463
BssECI CCNNGG 2 cut(s) 839, 865
BssMI GATC 3 cut(s) 169, 409, 843
Bst2UI CCWGG 2 cut(s) 221, 841
Bst6I CTCTTC 2 cut(s) 342, 532
BstAUI TGTACA 1 cut(s) 881
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 9 cut(s) 13, 153, 184, 557, 651, 666, 683, 694, 709
BstF5I GGATG 2 cut(s) 588, 598
BstKTI GATC 3 cut(s) 172, 412, 846
BstMAI GTCTC 2 cut(s) 509, 567
BstMBI GATC 3 cut(s) 169, 409, 843
BstMWI GCNNNNNNNGC 2 cut(s) 23, 211
BstNI CCWGG 2 cut(s) 221, 841
BstSCI CCNGG 3 cut(s) 219, 839, 864
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 2 cut(s) 195, 691
BsuRI GGCC 2 cut(s) 396, 487
BtsCI GGATG 2 cut(s) 588, 598
BtsIMutI CAGTG 1 cut(s) 659
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 429, 622
CseI GACGC 1 cut(s) 848
Csp6I GTAC 5 cut(s) 83, 466, 674, 773, 882
CviAII CATG 2 cut(s) 30, 577
CviQI GTAC 5 cut(s) 83, 466, 674, 773, 882
DdeI CTNAG 9 cut(s) 13, 153, 184, 557, 651, 666, 683, 694, 709
DpnI GATC 3 cut(s) 171, 411, 845
DpnII GATC 3 cut(s) 169, 409, 843
DraIII CACNNNGTG 2 cut(s) 283, 418
EaeI YGGCCR 2 cut(s) 394, 485
Eam1104I CTCTTC 2 cut(s) 342, 532
EarI CTCTTC 2 cut(s) 342, 532
EciI GGCGGA 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 567
Eco47I GGWCC 2 cut(s) 429, 622
Eco53kI GAGCTC 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 219, 839
EcoT38I GRGCYC 1 cut(s) 207
FaeI CATG 2 cut(s) 33, 580
FaqI GGGAC 2 cut(s) 18, 756
FatI CATG 2 cut(s) 29, 576
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 2 cut(s) 595, 605
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 2 cut(s) 215, 525
GluI GCNGC 1 cut(s) 318
HaeIII GGCC 2 cut(s) 396, 487
HapII CCGG 1 cut(s) 865
HgaI GACGC 1 cut(s) 848
Hin1II CATG 2 cut(s) 33, 580
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 865
HphI GGTGA 4 cut(s) 73, 199, 854, 885
Hpy166II GTNNAC 2 cut(s) 454, 689
Hpy188I TCNGA 7 cut(s) 154, 187, 249, 433, 605, 697, 911
Hpy188III TCNNGA 4 cut(s) 53, 100, 614, 791
Hpy8I GTNNAC 2 cut(s) 454, 689
HpyAV CCTTC 3 cut(s) 182, 583, 808
HpyCH4V TGCA 5 cut(s) 128, 228, 265, 689, 724
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 211
HpyF3I CTNAG 9 cut(s) 13, 153, 184, 557, 651, 666, 683, 694, 709
Hsp92II CATG 2 cut(s) 33, 580
KpnI GGTACC 2 cut(s) 86, 776
Kzo9I GATC 3 cut(s) 169, 409, 843
LmnI GCTCC 3 cut(s) 202, 550, 705
LweI GCATC 3 cut(s) 115, 583, 784
MaeI CTAG 2 cut(s) 215, 525
MaeIII GTNAC 3 cut(s) 295, 860, 891
MalI GATC 3 cut(s) 171, 411, 845
MboI GATC 3 cut(s) 169, 409, 843
MboII GAAGA 5 cut(s) 141, 359, 364, 549, 740
MhlI GDGCHC 4 cut(s) 195, 207, 659, 691
MlsI TGGCCA 2 cut(s) 396, 487
MluCI AATT 2 cut(s) 360, 830
MluNI TGGCCA 2 cut(s) 396, 487
MmeI TCCRAC 4 cut(s) 456, 523, 649, 793
Mox20I TGGCCA 2 cut(s) 396, 487
MscI TGGCCA 2 cut(s) 396, 487
MseI TTAA 2 cut(s) 252, 572
MslI CAYNNNNRTG 3 cut(s) 402, 581, 719
Msp20I TGGCCA 2 cut(s) 396, 487
MspI CCGG 1 cut(s) 865
MspR9I CCNGG 3 cut(s) 221, 841, 866
MvaI CCWGG 2 cut(s) 221, 841
MwoI GCNNNNNNNGC 2 cut(s) 23, 211
NciI CCSGG 1 cut(s) 866
NdeII GATC 3 cut(s) 169, 409, 843
NlaIII CATG 2 cut(s) 33, 580
NlaIV GGNNCC 3 cut(s) 84, 159, 774
NmuCI GTSAC 2 cut(s) 860, 891
PaeR7I CTCGAG 1 cut(s) 476
PaqCI CACCTGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 219, 839
PspGI CCWGG 2 cut(s) 219, 839
PspN4I GGNNCC 3 cut(s) 84, 159, 774
PspPI GGNCC 2 cut(s) 429, 622
PspXI VCTCGAGB 1 cut(s) 476
RsaI GTAC 5 cut(s) 84, 467, 675, 774, 883
RsaNI GTAC 5 cut(s) 83, 466, 674, 773, 882
RseI CAYNNNNRTG 3 cut(s) 402, 581, 719
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 252, 572
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 3 cut(s) 169, 409, 843
Sau96I GGNCC 2 cut(s) 429, 622
ScaI AGTACT 1 cut(s) 675
ScrFI CCNGG 3 cut(s) 221, 841, 866
SduI GDGCHC 4 cut(s) 195, 207, 659, 691
SfaNI GCATC 3 cut(s) 115, 583, 784
SfcI CTRYAG 1 cut(s) 636
Sfr274I CTCGAG 1 cut(s) 476
SinI GGWCC 2 cut(s) 429, 622
SlaI CTCGAG 1 cut(s) 476
SmiMI CAYNNNNRTG 3 cut(s) 402, 581, 719
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 2 cut(s) 360, 830
SsiI CCGC 2 cut(s) 317, 320
SspMI CTAG 2 cut(s) 215, 525
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 219, 839, 864
TaqI TCGA 1 cut(s) 477
TasI AATT 2 cut(s) 360, 830
TatI WGTACW 3 cut(s) 465, 673, 881
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 252, 572
Tru9I TTAA 2 cut(s) 252, 572
TscAI CASTG 1 cut(s) 659
TseFI GTSAC 2 cut(s) 860, 891
Tsp45I GTSAC 2 cut(s) 860, 891
TspDTI ATGAA 2 cut(s) 120, 790
TspGWI ACGGA 2 cut(s) 294, 866
TspRI CASTG 1 cut(s) 659
VneI GTGCAC 1 cut(s) 687
VpaK11BI GGWCC 2 cut(s) 429, 622
XhoI CTCGAG 1 cut(s) 476
XspI CTAG 2 cut(s) 215, 525
ZrmI AGTACT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.