Rh7BG225100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000155
Physical Location & Seq
Reverse (-)
19409000 .. 19413807
4808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG225100.1

Sequence Viewer

Length: 1134 bp
ATGATTCGTCGCAGGGATGATAAGATAAAGAGCTTTCGTATTCATTGGGGTTTCTCTGCAGGAATTTCAGAAGAGAGTTTCCGAATGATGACTTGGATCCTTATTGCAGTGAGGTGCAATGTTGAAGTGCTTGATCTTGAGTTGAGGTTGAATACAAAAGATGGGGCAACACCTGAATTGCCACCTTGCATCTATTGCTGTGAATCTTTGAGGTCAATGTTGATCAACACAGAGACAATTCTTAAAGCACCCTCCTTTGCTTGTTCCAATAATCTCCAATACTTGAAGTTGACAAGTGTTAGAATGGATGATGGCTTTGGCAAATGGATCTCGGGCTCATGCAAATGCATTAAGGAACTATTGTTAGACAATGTCCATGTGGGAAGTTTCACCATTGAAAGCTCGTCTTTGGAATCATTTACGTTGTTGTATTGCCATAATAATGACAGGGGTCACTTTAGCATCTCAGGTGAGAAACTTGCTGAGATAAATATAGAGTGGGAGAATAATAAAGCTAGCAGCAGTATTACCAGATCATTAAATGTTTATGCTCCAAATCTCAAGTATTTGAAATGGATTGGGAATTTGTTGAATTACCAAGATTTGGGGAAATTTATGGGTTTAGAGAAAGCTCATATCTTTCTCAAGCGTCAGGGAGATGATTATGACTTGGACAATGCATTTGAGGTTCTTTGCAGTTTCTACAGGGTTAAATCACTTGTTCTGAGCGAGGAGACCATTAAGGTATTGCTCAGGGAAGGTTCCATGCATGCCCCATTGGATGGTACTATTTACTTGGGTATGCATATTATGAACTTGACTGGTGACCTAGTCCCTCCAATGGTATCTCTTCTGAGAGGAATGCCTAATTTGAAGACTTTGTACATCAATTCGTACCCTTCCTTGCACATTGCCTGTAGTTTTAAGAGGAAATACTGGAAATCCCAAAATCTGGATTGTATTCATCAGCTTGAGGAGGTACGGCTTCATGTTTGGAAGAGAATCTGCTCGCAAAGAGCTCGGAAGCTTAATCCAAGACCTTCGCCGCCAGAATCCCAATTCCGATCCTCATTCCTGACTTCATTTGGGTTCATGGCATCAGGTGGGCAGTGTGGAAATCCCTTCATTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

377

Amino Acids

43.1

Weight (kDa)

8.67

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 32 - 190 8.5e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 604, 782, 952
AciI CCGC 1 cut(s) 1046
AclWI GGATC 4 cut(s) 91, 104, 335, 1059
AcsI RAATTY 3 cut(s) 63, 583, 611
AfaI GTAC 4 cut(s) 787, 884, 896, 981
AfiI CCNNNNNNNGG 4 cut(s) 604, 782, 841, 952
AgsI TTSAA 7 cut(s) 125, 151, 286, 398, 571, 592, 874
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 7 cut(s) 33, 402, 515, 632, 970, 1019, 1027
AluI AGCT 7 cut(s) 33, 402, 515, 632, 970, 1019, 1027
Alw21I GWGCWC 1 cut(s) 1021
Alw26I GTCTC 2 cut(s) 227, 728
AlwI GGATC 4 cut(s) 91, 104, 335, 1059
Ama87I CYCGRG 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 519
ApoI RAATTY 3 cut(s) 63, 583, 611
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
AsuHPI GGTGA 3 cut(s) 382, 482, 836
AsuNHI GCTAGC 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 331
BamHI GGATCC 1 cut(s) 96
BanII GRGCYC 2 cut(s) 338, 1021
BarI GAAGNNNNNNTAC 2 cut(s) 866, 898
BbsI GAAGAC 1 cut(s) 881
Bbv12I GWGCWC 1 cut(s) 1021
BbvI GCAGC 1 cut(s) 531
BccI CCATC 3 cut(s) 155, 305, 776
BceAI ACGGC 1 cut(s) 998
BcgI CGANNNNNNTGC 2 cut(s) 1001, 1035
BclI TGATCA 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 227, 728
BfaI CTAG 2 cut(s) 516, 830
BfmI CTRYAG 3 cut(s) 57, 703, 916
BisI GCNGC 2 cut(s) 520, 1046
BlsI GCNGC 2 cut(s) 521, 1047
BmeT110I CYCGRG 1 cut(s) 331
BmiI GGNNCC 2 cut(s) 98, 763
BmsI GCATC 3 cut(s) 198, 471, 1106
BmtI GCTAGC 1 cut(s) 519
BoxI GACNNNNGTC 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 881
Bpu10I CCTNAGC 1 cut(s) 752
BpuEI CTTGAG 4 cut(s) 158, 545, 629, 992
BsaI GGTCTC 1 cut(s) 728
Bsc4I CCNNNNNNNGG 4 cut(s) 604, 782, 841, 952
Bse1I ACTGG 2 cut(s) 826, 941
Bse3DI GCAATG 2 cut(s) 124, 909
BseGI GGATG 3 cut(s) 22, 313, 787
BseLI CCNNNNNNNGG 4 cut(s) 604, 782, 841, 952
BseMI GCAATG 2 cut(s) 124, 909
BseMII CTCAG 5 cut(s) 474, 480, 716, 766, 845
BseNI ACTGG 2 cut(s) 826, 941
BseRI GAGGAG 2 cut(s) 746, 989
BseXI GCAGC 1 cut(s) 531
BsiHKAI GWGCWC 1 cut(s) 1021
BsiHKCI CYCGRG 1 cut(s) 331
BslFI GGGAC 1 cut(s) 818
BslI CCNNNNNNNGG 4 cut(s) 604, 782, 841, 952
BsmAI GTCTC 2 cut(s) 227, 728
BsmFI GGGAC 1 cut(s) 818
BsmI GAATGC 1 cut(s) 867
Bso31I GGTCTC 1 cut(s) 728
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 338, 1021
Bsp1407I TGTACA 1 cut(s) 882
Bsp143I GATC 6 cut(s) 96, 133, 222, 327, 533, 1064
BspACI CCGC 1 cut(s) 1046
BspCNI CTCAG 5 cut(s) 475, 479, 717, 765, 846
BspLI GGNNCC 2 cut(s) 98, 763
BspMAI CTGCAG 1 cut(s) 61
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 4 cut(s) 91, 104, 335, 1059
BspTNI GGTCTC 1 cut(s) 728
BsrDI GCAATG 2 cut(s) 124, 909
BsrGI TGTACA 1 cut(s) 882
BsrI ACTGG 2 cut(s) 826, 941
BssMI GATC 6 cut(s) 96, 133, 222, 327, 533, 1064
Bst6I CTCTTC 3 cut(s) 66, 855, 992
BstAPI GCANNNNNTGC 1 cut(s) 195
BstAUI TGTACA 1 cut(s) 882
BstC8I GCNNGC 3 cut(s) 517, 771, 1010
BstDEI CTNAG 5 cut(s) 466, 483, 725, 752, 854
BstEII GGTNACC 1 cut(s) 824
BstF5I GGATG 3 cut(s) 22, 313, 787
BstKTI GATC 6 cut(s) 99, 136, 225, 330, 536, 1067
BstMAI GTCTC 2 cut(s) 227, 728
BstMBI GATC 6 cut(s) 96, 133, 222, 327, 533, 1064
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 773
BstPAI GACNNNNGTC 1 cut(s) 450
BstPI GGTNACC 1 cut(s) 824
BstSFI CTRYAG 3 cut(s) 57, 703, 916
BstV1I GCAGC 1 cut(s) 531
BstV2I GAAGAC 1 cut(s) 881
BstX2I RGATCY 2 cut(s) 96, 327
BstYI RGATCY 2 cut(s) 96, 327
BtsCI GGATG 3 cut(s) 22, 313, 787
BtsI GCAGTG 2 cut(s) 114, 1115
BtsIMutI CAGTG 2 cut(s) 114, 1115
Cac8I GCNNGC 3 cut(s) 517, 771, 1010
CseI GACGC 1 cut(s) 638
Csp6I GTAC 4 cut(s) 786, 883, 895, 980
CviAII CATG 6 cut(s) 339, 377, 766, 770, 989, 1093
CviQI GTAC 4 cut(s) 786, 883, 895, 980
DdeI CTNAG 5 cut(s) 466, 483, 725, 752, 854
DpnI GATC 6 cut(s) 98, 135, 224, 329, 535, 1066
DpnII GATC 6 cut(s) 96, 133, 222, 327, 533, 1064
Eam1104I CTCTTC 3 cut(s) 66, 855, 992
EarI CTCTTC 3 cut(s) 66, 855, 992
Ecl136II GAGCTC 1 cut(s) 1019
Eco24I GRGCYC 2 cut(s) 338, 1021
Eco31I GGTCTC 1 cut(s) 728
Eco53kI GAGCTC 1 cut(s) 1019
Eco88I CYCGRG 1 cut(s) 331
Eco91I GGTNACC 1 cut(s) 824
EcoICRI GAGCTC 1 cut(s) 1019
EcoO65I GGTNACC 1 cut(s) 824
EcoT22I ATGCAT 4 cut(s) 350, 682, 771, 807
EcoT38I GRGCYC 2 cut(s) 338, 1021
FaeI CATG 6 cut(s) 342, 380, 769, 773, 992, 1096
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FaqI GGGAC 1 cut(s) 818
FatI CATG 6 cut(s) 338, 376, 765, 769, 988, 1092
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 520, 1046
FokI GGATG 3 cut(s) 29, 320, 794
FriOI GRGCYC 2 cut(s) 338, 1021
Fsp4HI GCNGC 2 cut(s) 520, 1046
FspBI CTAG 2 cut(s) 516, 830
GluI GCNGC 2 cut(s) 520, 1046
HgaI GACGC 1 cut(s) 638
Hin1II CATG 6 cut(s) 342, 380, 769, 773, 992, 1096
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 1025
HinfI GANTC 5 cut(s) 4, 203, 413, 1002, 1052
HphI GGTGA 3 cut(s) 382, 482, 836
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 6 cut(s) 70, 83, 726, 855, 1023, 1064
Hpy188III TCNNGA 3 cut(s) 137, 953, 1075
Hpy8I GTNNAC 1 cut(s) 291
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 4 cut(s) 752, 909, 1050, 1132
HpyCH4IV ACGT 1 cut(s) 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 5 cut(s) 466, 483, 725, 752, 854
HpySE526I ACGT 1 cut(s) 422
Hsp92II CATG 6 cut(s) 342, 380, 769, 773, 992, 1096
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 6 cut(s) 96, 133, 222, 327, 533, 1064
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 1 cut(s) 531
LweI GCATC 3 cut(s) 198, 471, 1106
MaeI CTAG 2 cut(s) 516, 830
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 2 cut(s) 452, 824
MalI GATC 6 cut(s) 98, 135, 224, 329, 535, 1066
MboI GATC 6 cut(s) 96, 133, 222, 327, 533, 1064
MboII GAAGA 4 cut(s) 83, 842, 886, 1009
MflI RGATCY 2 cut(s) 96, 327
MhlI GDGCHC 2 cut(s) 338, 1021
MluCI AATT 9 cut(s) 63, 176, 237, 583, 592, 611, 868, 889, 1058
Mph1103I ATGCAT 4 cut(s) 350, 682, 771, 807
MseI TTAA 8 cut(s) 243, 351, 539, 711, 741, 924, 1029, 1132
MslI CAYNNNNRTG 2 cut(s) 343, 441
Mva1269I GAATGC 1 cut(s) 867
MwoI GCNNNNNNNGC 1 cut(s) 195
NdeII GATC 6 cut(s) 96, 133, 222, 327, 533, 1064
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 6 cut(s) 342, 380, 769, 773, 992, 1096
NlaIV GGNNCC 2 cut(s) 98, 763
NmuCI GTSAC 2 cut(s) 452, 824
NsiI ATGCAT 4 cut(s) 350, 682, 771, 807
NspI RCATGY 1 cut(s) 773
PaeI GCATGC 1 cut(s) 773
PctI GAATGC 1 cut(s) 867
PfeI GAWTC 5 cut(s) 4, 203, 413, 1002, 1052
PflFI GACNNNGTC 2 cut(s) 371, 830
PflMI CCANNNNNTGG 3 cut(s) 604, 782, 952
PkrI GCNGC 2 cut(s) 521, 1047
PshAI GACNNNNGTC 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 1021
PspEI GGTNACC 1 cut(s) 824
PspN4I GGNNCC 2 cut(s) 98, 763
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 2 cut(s) 96, 327
PsyI GACNNNGTC 2 cut(s) 371, 830
RsaI GTAC 4 cut(s) 787, 884, 896, 981
RsaNI GTAC 4 cut(s) 786, 883, 895, 980
RseI CAYNNNNRTG 2 cut(s) 343, 441
SacI GAGCTC 1 cut(s) 1021
SaqAI TTAA 8 cut(s) 243, 351, 539, 711, 741, 924, 1029, 1132
SatI GCNGC 2 cut(s) 520, 1046
Sau3AI GATC 6 cut(s) 96, 133, 222, 327, 533, 1064
SduI GDGCHC 2 cut(s) 338, 1021
SfaNI GCATC 3 cut(s) 198, 471, 1106
SfcI CTRYAG 3 cut(s) 57, 703, 916
SmiMI CAYNNNNRTG 2 cut(s) 343, 441
SmlI CTYRAG 4 cut(s) 137, 560, 644, 971
SmoI CTYRAG 4 cut(s) 137, 560, 644, 971
SphI GCATGC 1 cut(s) 773
Sse9I AATT 9 cut(s) 63, 176, 237, 583, 592, 611, 868, 889, 1058
SsiI CCGC 1 cut(s) 1046
SspMI CTAG 2 cut(s) 516, 830
SstI GAGCTC 1 cut(s) 1021
TaiI ACGT 1 cut(s) 425
TasI AATT 9 cut(s) 63, 176, 237, 583, 592, 611, 868, 889, 1058
TatI WGTACW 1 cut(s) 882
TauI GCSGC 1 cut(s) 1048
TfiI GAWTC 5 cut(s) 4, 203, 413, 1002, 1052
Tru1I TTAA 8 cut(s) 243, 351, 539, 711, 741, 924, 1029, 1132
Tru9I TTAA 8 cut(s) 243, 351, 539, 711, 741, 924, 1029, 1132
TscAI CASTG 2 cut(s) 114, 1115
TseFI GTSAC 2 cut(s) 452, 824
TseI GCWGC 1 cut(s) 519
Tsp45I GTSAC 2 cut(s) 452, 824
TspDTI ATGAA 7 cut(s) 32, 827, 953, 977, 1071, 1081, 1114
TspRI CASTG 2 cut(s) 114, 1115
Tth111I GACNNNGTC 2 cut(s) 371, 830
Van91I CCANNNNNTGG 3 cut(s) 604, 782, 952
XapI RAATTY 3 cut(s) 63, 583, 611
XceI RCATGY 1 cut(s) 773
XspI CTAG 2 cut(s) 516, 830
Zsp2I ATGCAT 4 cut(s) 350, 682, 771, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.