Rorug03G0148500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000155
Physical Location & Seq
Reverse (-)
12200887 .. 12201663
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0148500.1

Sequence Viewer

Length: 777 bp
ATGACTTCCTCCATACCTTTTGATCACATCAATGAAGAACACGAAGAGCTCCTAACCCTTCAACTCTCCACCGGAAACCATTCAACCCGACCCATCCAACAATCTCCTCTTTTGATCTCGACACCGTCTCAGTCTCTAACTTTATTTGCAGCAACGAATTTCCACATGACATCACTACAAAACTCTAACCCTCCTGCTCCTGCTGCCTCTAATCACGAGGCTTCAGCGGCTGGTAGTTCCAGGTCGTCCCGTGCCCGCAGATCTTCAGCTCAAACCCTAAGAGAAGGGAAGACTGAAGACATACCAGCCCCATATCCTTGGGCTACCACAAAACGTGCTCAAGTGTACTCTCGTCGATATTTGCTTTCTAATGGCATCAAGAAAATCAGTGGTGTGGTCCAATGCAAAAAGTGTGAACAGAAGTATGAGATTGAGTATGATCTGGAACAAAAGTTCGAGGATGTGGCGACTTATGTGTCTCAGCACAAGAGTGCAATGCGTGATAGGGCACCTGCAGTTTGGATGACTCCCACACTCCCGGATTGCAAGTTCTGTGGTCAAACAAATTGTGTGAAGCCTGAGATGGACAAGAAGAGGTCAATCAATTGGCTGTTCTTGCTTTTGGGTCAAATGCTCGGAATGTGCAAACTCAATGAATTGAAGTACTTCTGCAAGCACACCAAGAATCACAGGACCGGTGCTAAAGATCGGGTTTTGTATCTTACTTATCTGGGACTGTTGAAACAACTTGAGCCGAATGGACCCTTTGATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

258

Amino Acids

29.17

Weight (kDa)

9.19

Isoelectric Point (pI)

52.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7086 PF23324 119 - 250 1.4e-64 Domain of unknown function (DUF7086)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
AasI GACNNNNNNGTC 1 cut(s) 475
Acc36I ACCTGC 1 cut(s) 520
AccB1I GGYRCC 1 cut(s) 508
AciI CCGC 2 cut(s) 227, 256
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 3 cut(s) 207, 249, 315
AfaI GTAC 2 cut(s) 347, 665
AgeI ACCGGT 1 cut(s) 695
AgsI TTSAA 4 cut(s) 62, 84, 661, 742
AjnI CCWGG 1 cut(s) 239
AleI CACNNNNGTG 1 cut(s) 489
AloI GAACNNNNNNTCC 4 cut(s) 437, 469, 533, 565
AluBI AGCT 2 cut(s) 49, 269
AluI AGCT 2 cut(s) 49, 269
Alw21I GWGCWC 2 cut(s) 51, 340
Alw26I GTCTC 3 cut(s) 132, 138, 483
AlwNI CAGNNNCTG 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 149, 203
ApoI RAATTY 1 cut(s) 157
AsiGI ACCGGT 1 cut(s) 695
Asp700I GAANNNNTTC 2 cut(s) 79, 665
AspS9I GGNCC 3 cut(s) 397, 693, 761
AsuC2I CCSGG 1 cut(s) 539
AvaII GGWCC 3 cut(s) 397, 693, 761
BaeGI GKGCMC 2 cut(s) 256, 511
BanI GGYRCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 51
BauI CACGAG 1 cut(s) 215
BbsI GAAGAC 2 cut(s) 296, 303
Bbv12I GWGCWC 2 cut(s) 51, 340
BbvI GCAGC 2 cut(s) 161, 190
BccI CCATC 2 cut(s) 101, 577
BciT130I CCWGG 1 cut(s) 241
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 3 cut(s) 132, 138, 483
BfmI CTRYAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 520
BglII AGATCT 1 cut(s) 260
BisI GCNGC 3 cut(s) 150, 204, 228
BlsI GCNGC 3 cut(s) 151, 205, 229
BmcAI AGTACT 1 cut(s) 665
Bme1390I CCNGG 2 cut(s) 241, 539
Bme18I GGWCC 3 cut(s) 397, 693, 761
BmgT120I GGNCC 3 cut(s) 397, 693, 761
BmiI GGNNCC 2 cut(s) 510, 763
BmrFI CCNGG 2 cut(s) 241, 539
BmsI GCATC 1 cut(s) 384
BpiI GAAGAC 2 cut(s) 296, 303
BpuEI CTTGAG 2 cut(s) 324, 770
BpuMI CCSGG 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 317
BsaWI WCCGGW 2 cut(s) 71, 695
Bse118I RCCGGY 1 cut(s) 695
Bse3DI GCAATG 1 cut(s) 501
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 3 cut(s) 93, 466, 528
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 3 cut(s) 143, 494, 570
BseRI GAGGAG 1 cut(s) 96
BseSI GKGCMC 2 cut(s) 256, 511
BseXI GCAGC 2 cut(s) 161, 190
BshNI GGYRCC 1 cut(s) 508
BshTI ACCGGT 1 cut(s) 695
BsiHKAI GWGCWC 2 cut(s) 51, 340
BsiSI CCGG 3 cut(s) 72, 539, 696
BslFI GGGAC 2 cut(s) 232, 747
BsmAI GTCTC 3 cut(s) 132, 138, 483
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 232, 747
Bsp1286I GDGCHC 4 cut(s) 51, 256, 340, 511
Bsp143I GATC 5 cut(s) 22, 114, 260, 439, 706
BspACI CCGC 2 cut(s) 227, 256
BspCNI CTCAG 3 cut(s) 142, 493, 571
BspLI GGNNCC 2 cut(s) 510, 763
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 1 cut(s) 520
BspQI GCTCTTC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 695
BssAI RCCGGY 1 cut(s) 695
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 5 cut(s) 22, 114, 260, 439, 706
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 317
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 2 cut(s) 126, 738
Bst6I CTCTTC 2 cut(s) 39, 587
BstC8I GCNNGC 2 cut(s) 256, 674
BstDEI CTNAG 4 cut(s) 129, 278, 480, 579
BstF5I GGATG 3 cut(s) 93, 466, 528
BstKTI GATC 5 cut(s) 25, 117, 263, 442, 709
BstMAI GTCTC 3 cut(s) 132, 138, 483
BstMBI GATC 5 cut(s) 22, 114, 260, 439, 706
BstMWI GCNNNNNNNGC 3 cut(s) 203, 227, 616
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 239, 537
BstSFI CTRYAG 1 cut(s) 513
BstSLI GKGCMC 2 cut(s) 256, 511
BstV1I GCAGC 2 cut(s) 161, 190
BstV2I GAAGAC 2 cut(s) 296, 303
BstX2I RGATCY 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 318
BstYI RGATCY 1 cut(s) 260
BtsCI GGATG 3 cut(s) 93, 466, 528
BtsIMutI CAGTG 1 cut(s) 394
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 256, 674
CaiI CAGNNNCTG 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 695
Cfr13I GGNCC 3 cut(s) 397, 693, 761
Csp6I GTAC 2 cut(s) 346, 664
CspAI ACCGGT 1 cut(s) 695
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 1 cut(s) 166
CviJI RGCY 9 cut(s) 49, 221, 230, 269, 308, 323, 577, 610, 754
CviKI_1 RGCY 9 cut(s) 49, 221, 230, 269, 308, 323, 577, 610, 754
CviQI GTAC 2 cut(s) 346, 664
DdeI CTNAG 4 cut(s) 129, 278, 480, 579
DpnI GATC 5 cut(s) 24, 116, 262, 441, 708
DpnII GATC 5 cut(s) 22, 114, 260, 439, 706
DrdI GACNNNNNNGTC 1 cut(s) 475
DseDI GACNNNNNNGTC 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 39, 587
EarI CTCTTC 2 cut(s) 39, 587
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 51
Eco47I GGWCC 3 cut(s) 397, 693, 761
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 3 cut(s) 207, 249, 315
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 317
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 317
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 1 cut(s) 169
FaiI YATR 7 cut(s) 14, 167, 302, 313, 426, 438, 474
FaqI GGGAC 2 cut(s) 232, 747
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 263
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 150, 204, 228
FokI GGATG 3 cut(s) 80, 473, 535
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 3 cut(s) 150, 204, 228
GluI GCNGC 3 cut(s) 150, 204, 228
HapII CCGG 3 cut(s) 72, 539, 696
Hin1II CATG 1 cut(s) 169
HinfI GANTC 2 cut(s) 526, 685
HpaII CCGG 3 cut(s) 72, 539, 696
Hpy166II GTNNAC 2 cut(s) 346, 416
Hpy188I TCNGA 1 cut(s) 638
Hpy188III TCNNGA 4 cut(s) 118, 215, 379, 443
Hpy8I GTNNAC 2 cut(s) 346, 416
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 2 cut(s) 68, 278
HpyCH4III ACNGT 2 cut(s) 126, 738
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 7 cut(s) 149, 405, 494, 515, 546, 645, 672
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 227, 616
HpyF3I CTNAG 4 cut(s) 129, 278, 480, 579
HpySE526I ACGT 1 cut(s) 334
Hsp92II CATG 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 5 cut(s) 22, 114, 260, 439, 706
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 54, 202
Lsp1109I GCAGC 2 cut(s) 161, 190
LweI GCATC 1 cut(s) 384
MaeII ACGT 1 cut(s) 334
MalI GATC 5 cut(s) 24, 116, 262, 441, 708
MboI GATC 5 cut(s) 22, 114, 260, 439, 706
MboII GAAGA 6 cut(s) 47, 56, 255, 301, 308, 604
MfeI CAATTG 1 cut(s) 604
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 4 cut(s) 51, 256, 340, 511
MluCI AATT 4 cut(s) 157, 565, 604, 656
MlyI GAGTC 1 cut(s) 520
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 7 cut(s) 19, 117, 201, 211, 217, 451, 588
MroXI GAANNNNTTC 2 cut(s) 79, 665
MslI CAYNNNNRTG 2 cut(s) 30, 489
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 3 cut(s) 72, 539, 696
MspR9I CCNGG 2 cut(s) 241, 539
MunI CAATTG 1 cut(s) 604
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 3 cut(s) 203, 227, 616
NciI CCSGG 1 cut(s) 539
NdeII GATC 5 cut(s) 22, 114, 260, 439, 706
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 2 cut(s) 510, 763
OliI CACNNNNGTG 1 cut(s) 489
PaqCI CACCTGC 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 39
PdmI GAANNNNTTC 2 cut(s) 79, 665
PfeI GAWTC 1 cut(s) 685
PflFI GACNNNGTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 537
PinAI ACCGGT 1 cut(s) 695
PkrI GCNGC 3 cut(s) 151, 205, 229
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 510, 763
PspPI GGNCC 3 cut(s) 397, 693, 761
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 124
RsaI GTAC 2 cut(s) 347, 665
RsaNI GTAC 2 cut(s) 346, 664
RseI CAYNNNNRTG 2 cut(s) 30, 489
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 39
SatI GCNGC 3 cut(s) 150, 204, 228
Sau3AI GATC 5 cut(s) 22, 114, 260, 439, 706
Sau96I GGNCC 3 cut(s) 397, 693, 761
ScaI AGTACT 1 cut(s) 665
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 2 cut(s) 241, 539
SduI GDGCHC 4 cut(s) 51, 256, 340, 511
SetI ASST 7 cut(s) 19, 51, 245, 271, 337, 514, 599
SfaNI GCATC 1 cut(s) 384
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 3 cut(s) 397, 693, 761
SmiMI CAYNNNNRTG 2 cut(s) 30, 489
SmlI CTYRAG 2 cut(s) 339, 749
SmoI CTYRAG 2 cut(s) 339, 749
Sse9I AATT 4 cut(s) 157, 565, 604, 656
SsiI CCGC 2 cut(s) 227, 256
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 239, 537
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 2 cut(s) 126, 738
TaiI ACGT 1 cut(s) 337
TaqI TCGA 3 cut(s) 119, 355, 456
TasI AATT 4 cut(s) 157, 565, 604, 656
TatI WGTACW 2 cut(s) 345, 663
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 685
TscAI CASTG 1 cut(s) 394
TseI GCWGC 2 cut(s) 149, 203
TspDTI ATGAA 2 cut(s) 48, 669
TspRI CASTG 1 cut(s) 394
Tth111I GACNNNGTC 1 cut(s) 124
VpaK11BI GGWCC 3 cut(s) 397, 693, 761
XapI RAATTY 1 cut(s) 157
XmnI GAANNNNTTC 2 cut(s) 79, 665
ZrmI AGTACT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.