RLG00000003348

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
47465689 .. 47467859
2171 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003348

Sequence Viewer

Length: 576 bp
ATGGAACATAAGAATAAGTCATTGGCAACTGCAACTTCTCAAGCTCAAGGAGCTTGTGCTGACCCCATGGTAGACAGATTGAGTAGTGTTCCACGCAAAGTTGCTCACCATATTCTTTCATTGGTATTGCTCAGGGAAGGTTCCATGCATGCCCCATTGGATGGTACTATTTACTTGGGTATGCATATTATGAACTTGACTGATGACCTAGTCCCTGCAATGGTATCTCTTCTGAGAGGAATGCCTAATTTGAAGACTGCCTGTGGTTTTAAGAGGAGATACTGGAAATCCCAAAATCTGGATTGTATTCATCAGCTTGAGGAGGTATCAGTAGCACTCTCCACTGGTTATCCTACTAATGCCTTGGAGTTCGCAACATATATTCTTGAGCATGCTCCGAAATTGAAGAAAATGGTCATATGTTATTTACCCCACCAGTTCTATATTATAGAGAGGATAAATAAAAGCAAGAAAATTTCCTCTGCAACTGTTGTCTTTATGAAAAGAGGAGTGAATGACGATGGAGCAATGGGTGAAAGTTATTATGGGAAGCTCTTTCACTTGCACCGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

21.49

Weight (kDa)

9.26

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 161, 298
AccI GTMKAC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 474
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 3 cut(s) 161, 220, 298
AgeI ACCGGT 1 cut(s) 567
AgsI TTSAA 2 cut(s) 253, 406
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 4 cut(s) 44, 53, 316, 553
AluI AGCT 4 cut(s) 44, 53, 316, 553
ApoI RAATTY 1 cut(s) 474
AsiGI ACCGGT 1 cut(s) 567
AsuHPI GGTGA 2 cut(s) 98, 545
BbsI GAAGAC 1 cut(s) 260
BccI CCATC 2 cut(s) 155, 515
BfaI CTAG 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 4 cut(s) 24, 30, 338, 407
BsaJI CCNNGG 2 cut(s) 66, 363
BsaWI WCCGGW 1 cut(s) 567
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 220, 298
Bse118I RCCGGY 1 cut(s) 567
Bse1I ACTGG 3 cut(s) 287, 349, 436
Bse3DI GCAATG 2 cut(s) 225, 534
BseDI CCNNGG 2 cut(s) 66, 363
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 3 cut(s) 161, 220, 298
BseMI GCAATG 2 cut(s) 225, 534
BseMII CTCAG 2 cut(s) 145, 224
BseNI ACTGG 3 cut(s) 287, 349, 436
BseRI GAGGAG 3 cut(s) 289, 335, 522
BshTI ACCGGT 1 cut(s) 567
BsiSI CCGG 1 cut(s) 568
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 3 cut(s) 161, 220, 298
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 246
Bsp19I CCATGG 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 144, 225
BspLI GGNNCC 1 cut(s) 142
BsrDI GCAATG 2 cut(s) 225, 534
BsrFI RCCGGY 1 cut(s) 567
BsrI ACTGG 3 cut(s) 287, 349, 436
BssAI RCCGGY 1 cut(s) 567
BssECI CCNNGG 2 cut(s) 66, 363
BssT1I CCWWGG 2 cut(s) 66, 363
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 150, 393
BstDEI CTNAG 2 cut(s) 131, 233
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 2 cut(s) 152, 395
BstV2I GAAGAC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 150, 393
Cfr10I RCCGGY 1 cut(s) 567
Csp6I GTAC 1 cut(s) 165
CspAI ACCGGT 1 cut(s) 567
CviAII CATG 4 cut(s) 67, 145, 149, 392
CviJI RGCY 4 cut(s) 44, 53, 316, 553
CviKI_1 RGCY 4 cut(s) 44, 53, 316, 553
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 2 cut(s) 131, 233
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 66, 363
EcoT14I CCWWGG 2 cut(s) 66, 363
EcoT22I ATGCAT 2 cut(s) 150, 186
ErhI CCWWGG 2 cut(s) 66, 363
FaeI CATG 4 cut(s) 70, 148, 152, 395
FaqI GGGAC 1 cut(s) 197
FatI CATG 4 cut(s) 66, 144, 148, 391
FauNDI CATATG 1 cut(s) 419
FblI GTMKAC 1 cut(s) 72
FokI GGATG 1 cut(s) 173
FspBI CTAG 1 cut(s) 209
HapII CCGG 1 cut(s) 568
Hin1II CATG 4 cut(s) 70, 148, 152, 395
HpaII CCGG 1 cut(s) 568
HphI GGTGA 2 cut(s) 98, 545
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 234, 399, 575
Hpy188III TCNNGA 2 cut(s) 299, 386
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4V TGCA 6 cut(s) 32, 148, 184, 218, 485, 565
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 131, 233
Hsp92II CATG 4 cut(s) 70, 148, 152, 395
LmnI GCTCC 3 cut(s) 50, 400, 524
LpnPI CCDG 7 cut(s) 118, 228, 268, 274, 284, 330, 449
MaeI CTAG 1 cut(s) 209
MboII GAAGA 3 cut(s) 221, 265, 418
MluCI AATT 3 cut(s) 247, 401, 474
MnlI CCTC 7 cut(s) 230, 267, 313, 316, 447, 490, 500
Mph1103I ATGCAT 2 cut(s) 150, 186
MseI TTAA 1 cut(s) 270
MspI CCGG 1 cut(s) 568
Mva1269I GAATGC 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 419
NlaIII CATG 4 cut(s) 70, 148, 152, 395
NlaIV GGNNCC 1 cut(s) 142
NsiI ATGCAT 2 cut(s) 150, 186
NspI RCATGY 2 cut(s) 152, 395
PaeI GCATGC 2 cut(s) 152, 395
PctI GAATGC 1 cut(s) 246
PflFI GACNNNGTC 1 cut(s) 209
PflMI CCANNNNNTGG 2 cut(s) 161, 298
PinAI ACCGGT 1 cut(s) 567
PspN4I GGNNCC 1 cut(s) 142
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 270
SetI ASST 7 cut(s) 46, 55, 142, 210, 318, 327, 555
SmlI CTYRAG 4 cut(s) 39, 45, 317, 386
SmoI CTYRAG 4 cut(s) 39, 45, 317, 386
SphI GCATGC 2 cut(s) 152, 395
Sse9I AATT 3 cut(s) 247, 401, 474
SspMI CTAG 1 cut(s) 209
StyI CCWWGG 2 cut(s) 66, 363
TaaI ACNGT 1 cut(s) 490
TasI AATT 3 cut(s) 247, 401, 474
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 349
TspDTI ATGAA 4 cut(s) 108, 206, 299, 515
TspRI CASTG 1 cut(s) 349
Tth111I GACNNNGTC 1 cut(s) 209
Van91I CCANNNNNTGG 2 cut(s) 161, 298
XapI RAATTY 1 cut(s) 474
XceI RCATGY 2 cut(s) 152, 395
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 2 cut(s) 150, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.