Rh3CG212600

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
19498669 .. 19499282
614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG212600.1

Sequence Viewer

Length: 441 bp
ATGTTCAAGGAAGGTTCCATGCCATTACCATTAGATGAGATTAGTAATTTGGGCATTCATATTTACAGCTTGAAAGATGTCCTAGTCCCGGCAATGGTCTCTCTTCTCAGAGGAATGACTAATTTGAATACTCTCTGGATAACATCTGCCAATTTGCCAACCTATATGCACTTCCCTAAGGTTGATGCATCTTTGTTCAATATGGGTTTTTGGATATCACAAAGGCTTGCTTTAGTTTCTCAACTTAGGGAGGTGAGAATAGAGCTTGCAAATTATGGGACTAATGAGTTTGAGTTAGCAAGGTATTTGCTGGAGCATGCTCATAATTTGAAGAAAATGGTCATACTTTATCCGCCCTGGCAGTCCCATCTTTTAAAGAAGATTATCAGAAAGAAGATTGCTTCTACTGCCAGGCTTGTCTTGCAGGAAAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.89

Weight (kDa)

9.84

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 88, 94
AgsI TTSAA 5 cut(s) 7, 73, 127, 199, 331
AjnI CCWGG 2 cut(s) 356, 410
AluBI AGCT 2 cut(s) 69, 265
AluI AGCT 2 cut(s) 69, 265
Alw26I GTCTC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 265
AxyI CCTNAGG 1 cut(s) 177
BccI CCATC 1 cut(s) 375
BciT130I CCWGG 2 cut(s) 358, 412
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 83
Bme1390I CCNGG 3 cut(s) 89, 358, 412
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 3 cut(s) 89, 358, 412
BmsI GCATC 2 cut(s) 175, 197
BpmI CTGGAG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 356
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 94
Bse21I CCTNAGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 2 cut(s) 358, 412
BseDI CCNNGG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 88, 94
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 121
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 3 cut(s) 71, 292, 349
BslI CCNNNNNNNGG 2 cut(s) 88, 94
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 3 cut(s) 71, 292, 349
BsmI GAATGC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 103
BspACI CCGC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 358, 412
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 228, 267, 318
BstDEI CTNAG 3 cut(s) 107, 177, 245
BstMAI GTCTC 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 407, 421
BstNI CCWGG 2 cut(s) 358, 412
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 3 cut(s) 87, 356, 410
Bsu36I CCTNAGG 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 228, 267, 318
CviAII CATG 2 cut(s) 19, 317
CviJI RGCY 4 cut(s) 69, 226, 265, 415
CviKI_1 RGCY 4 cut(s) 69, 226, 265, 415
DdeI CTNAG 3 cut(s) 107, 177, 245
DraI TTTAAA 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 103
Eco32I GATATC 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 356, 410
EcoRV GATATC 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 190
FaeI CATG 2 cut(s) 22, 320
FaiI YATR 9 cut(s) 20, 60, 165, 167, 203, 276, 318, 324, 344
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FaqI GGGAC 3 cut(s) 71, 292, 349
FatI CATG 2 cut(s) 18, 316
FspBI CTAG 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 332
HapII CCGG 1 cut(s) 89
Hin1II CATG 2 cut(s) 22, 320
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 2 cut(s) 110, 389
Hpy188III TCNNGA 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 5
HpyCH4V TGCA 4 cut(s) 169, 188, 269, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 421
HpyF3I CTNAG 3 cut(s) 107, 177, 245
Hsp92II CATG 2 cut(s) 22, 320
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 8 cut(s) 102, 121, 296, 343, 370, 397, 410, 424
LweI GCATC 2 cut(s) 175, 197
MaeI CTAG 1 cut(s) 83
MboII GAAGA 4 cut(s) 95, 343, 391, 406
MluCI AATT 5 cut(s) 46, 121, 151, 271, 325
MnlI CCTC 2 cut(s) 104, 244
Mph1103I ATGCAT 1 cut(s) 190
MseI TTAA 1 cut(s) 374
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 3 cut(s) 89, 358, 412
Mva1269I GAATGC 1 cut(s) 54
MvaI CCWGG 2 cut(s) 358, 412
MwoI GCNNNNNNNGC 2 cut(s) 407, 421
NciI CCSGG 1 cut(s) 89
NlaIII CATG 2 cut(s) 22, 320
NlaIV GGNNCC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 1 cut(s) 320
PaeI GCATGC 1 cut(s) 320
PctI GAATGC 1 cut(s) 54
Psp6I CCWGG 2 cut(s) 356, 410
PspGI CCWGG 2 cut(s) 356, 410
PspN4I GGNNCC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 374
ScrFI CCNGG 3 cut(s) 89, 358, 412
SetI ASST 7 cut(s) 16, 71, 164, 183, 255, 267, 305
SfaNI GCATC 2 cut(s) 175, 197
SphI GCATGC 1 cut(s) 320
Sse9I AATT 5 cut(s) 46, 121, 151, 271, 325
SsiI CCGC 1 cut(s) 353
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 3 cut(s) 87, 356, 410
TasI AATT 5 cut(s) 46, 121, 151, 271, 325
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TspDTI ATGAA 1 cut(s) 47
XceI RCATGY 1 cut(s) 320
XspI CTAG 1 cut(s) 83
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.