Rh3DG212100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000155
Physical Location & Seq
Forward (+)
19623526 .. 19625444
1919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG212100.1

Sequence Viewer

Length: 969 bp
ATGAAAAACAAACCGAGAACCCTGGAGAGTTTCAGTGATCTTCCTGACCAAGTTGCTCATCACATTCTTTCCTTTCTCACCATAAGAGACTTAACTCGGTTCGGTTCCACGTCCAAAAAATGCCGGGAGCTTTACCTATCAGCTCCATCATTGAACTTTAAGGTAGATGCCTCCTCTCGAAGATTCATGACCAAGCGAGCTAAGTTGCTCAACTCTGTGGAAAGGTACTTGCTTCAACGTGGTAATAATCCAATACTCTGCTTTCGCGTTTCTTGGGTTTTCCATGAAAGTGAAAGGGCAAGGTTGTGTGATGAGCAGTTCCGATTCGTCTCGTGGATCCAGAATGCTGTAAGGTGCAATGTCGAAGTAATCCAACTAGTTTTTGATCAAAGTCACACTGCAGTCCTGCCAGTCCAAAAAGTTGAGCTTTTTCTATCCCCTAAAGTAGATGACTTTGACAGCCTATTGGAGGTTCTTTCTGGTATTCGCAGGACTAAAGTTCTTATTCTAGATGGGAACACTATGGCTATGTTCAAGGAAGGTTCCATGCCATTACCATTAGATGAGATTAGTAATTTGGGCATTCATATTTACAGCTTGAAAGATGTCCTAGTCCCGGCAATGGTCTCTCTTCTCAGAGGAATGACTAATTTGAATACTCTCTGGATAACATCTGCCAATTTGCCAACCTATATGCACTTCCCTAAGGTTGATGCATCTTTGTTCAATATGGGTTTTTGGATATCACAAAGGCTTGCTTTAGTTTCTCAACTTAGGGAGGTGAGAATAGAGCTTGCAAATTATGGGACTAATGAGTTTGAGTTAGCAAGGTATTTGCTGGAGCATGCTCATAATTTGAAGAAAATGGTCATACTTTATCCGCCCTGGCAGTCCCATCTTTTAAAGAAGATTATCAGAAAGAAGATTGCTTCTACTGCCAGGCTTGTCTTGCAGGAAAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

322

Amino Acids

37.26

Weight (kDa)

9.75

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 44 4.5e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 1 cut(s) 881
AclWI GGATC 2 cut(s) 331, 344
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 3 cut(s) 469, 616, 622
AgsI TTSAA 7 cut(s) 154, 236, 535, 601, 655, 727, 859
AhlI ACTAGT 1 cut(s) 376
AjiI CACGTC 1 cut(s) 111
AjnI CCWGG 3 cut(s) 21, 884, 938
AluBI AGCT 6 cut(s) 130, 143, 200, 427, 597, 793
AluI AGCT 6 cut(s) 130, 143, 200, 427, 597, 793
Alw26I GTCTC 3 cut(s) 81, 334, 631
AlwI GGATC 2 cut(s) 331, 344
AsuC2I CCSGG 2 cut(s) 125, 617
AsuHPI GGTGA 2 cut(s) 70, 793
AxyI CCTNAGG 1 cut(s) 705
BamHI GGATCC 1 cut(s) 336
BauI CACGAG 1 cut(s) 331
BccI CCATC 3 cut(s) 154, 506, 903
BciT130I CCWGG 3 cut(s) 23, 886, 940
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 2 cut(s) 125, 617
BcoDI GTCTC 3 cut(s) 81, 334, 631
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 3 cut(s) 377, 509, 611
BfmI CTRYAG 1 cut(s) 399
Bme1390I CCNGG 5 cut(s) 23, 125, 617, 886, 940
BmgBI CACGTC 1 cut(s) 111
BmiI GGNNCC 3 cut(s) 106, 338, 544
BmrFI CCNGG 5 cut(s) 23, 125, 617, 886, 940
BmsI GCATC 3 cut(s) 157, 703, 725
BpmI CTGGAG 2 cut(s) 44, 860
BpuMI CCSGG 2 cut(s) 125, 617
BsaI GGTCTC 1 cut(s) 631
BsaJI CCNNGG 2 cut(s) 21, 884
Bsc4I CCNNNNNNNGG 3 cut(s) 469, 616, 622
Bse1I ACTGG 1 cut(s) 410
Bse21I CCTNAGG 1 cut(s) 705
Bse3DI GCAATG 2 cut(s) 364, 627
BseBI CCWGG 3 cut(s) 23, 886, 940
BseDI CCNNGG 2 cut(s) 21, 884
BseLI CCNNNNNNNGG 3 cut(s) 469, 616, 622
BseMI GCAATG 2 cut(s) 364, 627
BseMII CTCAG 1 cut(s) 649
BseNI ACTGG 1 cut(s) 410
BseRI GAGGAG 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 267
BsiSI CCGG 2 cut(s) 124, 617
BslFI GGGAC 3 cut(s) 599, 820, 877
BslI CCNNNNNNNGG 3 cut(s) 469, 616, 622
BsmAI GTCTC 3 cut(s) 81, 334, 631
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 3 cut(s) 599, 820, 877
BsmI GAATGC 2 cut(s) 349, 582
Bso31I GGTCTC 1 cut(s) 631
Bsp143I GATC 3 cut(s) 37, 336, 385
BspACI CCGC 1 cut(s) 881
BspCNI CTCAG 1 cut(s) 648
BspFNI CGCG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 106, 338, 544
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 2 cut(s) 331, 344
BspTNI GGTCTC 1 cut(s) 631
BsrDI GCAATG 2 cut(s) 364, 627
BsrI ACTGG 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 21, 884
BssMI GATC 3 cut(s) 37, 336, 385
BssSI CACGAG 1 cut(s) 331
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 23, 886, 940
Bst6I CTCTTC 1 cut(s) 636
BstC8I GCNNGC 4 cut(s) 198, 756, 795, 846
BstDEI CTNAG 4 cut(s) 201, 635, 705, 773
BstENI CCTNNNNNAGG 1 cut(s) 467
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 3 cut(s) 40, 339, 388
BstMAI GTCTC 3 cut(s) 81, 334, 631
BstMBI GATC 3 cut(s) 37, 336, 385
BstMWI GCNNNNNNNGC 2 cut(s) 935, 949
BstNI CCWGG 3 cut(s) 23, 886, 940
BstNSI RCATGY 1 cut(s) 848
BstSCI CCNGG 5 cut(s) 21, 123, 615, 884, 938
BstSFI CTRYAG 1 cut(s) 399
BstUI CGCG 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
Bsu36I CCTNAGG 1 cut(s) 705
BtrI CACGTC 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 40, 396
Cac8I GCNNGC 4 cut(s) 198, 756, 795, 846
CciI TCATGA 1 cut(s) 186
Csp6I GTAC 1 cut(s) 226
CviAII CATG 4 cut(s) 187, 284, 547, 845
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 4 cut(s) 201, 635, 705, 773
DpnI GATC 3 cut(s) 39, 338, 387
DpnII GATC 3 cut(s) 37, 336, 385
DraI TTTAAA 1 cut(s) 903
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 870
Eco31I GGTCTC 1 cut(s) 631
Eco32I GATATC 1 cut(s) 744
Eco81I CCTNAGG 1 cut(s) 705
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoRII CCWGG 3 cut(s) 21, 884, 938
EcoRV GATATC 1 cut(s) 744
EcoT22I ATGCAT 1 cut(s) 718
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 4 cut(s) 190, 287, 550, 848
FalI AAGNNNNNCTT 4 cut(s) 411, 443, 742, 774
FaqI GGGAC 3 cut(s) 599, 820, 877
FatI CATG 4 cut(s) 186, 283, 546, 844
FbaI TGATCA 1 cut(s) 385
FspBI CTAG 3 cut(s) 377, 509, 611
GsuI CTGGAG 2 cut(s) 44, 860
HapII CCGG 2 cut(s) 124, 617
Hin1II CATG 4 cut(s) 190, 287, 550, 848
HinfI GANTC 2 cut(s) 183, 324
HpaII CCGG 2 cut(s) 124, 617
HphI GGTGA 2 cut(s) 70, 793
Hpy188I TCNGA 3 cut(s) 323, 638, 917
Hpy188III TCNNGA 6 cut(s) 44, 177, 187, 340, 509, 664
HpyAV CCTTC 1 cut(s) 533
HpyCH4IV ACGT 2 cut(s) 110, 238
HpyCH4V TGCA 6 cut(s) 357, 401, 697, 716, 797, 952
HpyF10VI GCNNNNNNNGC 2 cut(s) 935, 949
HpyF3I CTNAG 4 cut(s) 201, 635, 705, 773
HpySE526I ACGT 2 cut(s) 110, 238
Hsp92II CATG 4 cut(s) 190, 287, 550, 848
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 3 cut(s) 37, 336, 385
LmnI GCTCC 3 cut(s) 127, 148, 841
LweI GCATC 3 cut(s) 157, 703, 725
MaeI CTAG 3 cut(s) 377, 509, 611
MaeII ACGT 2 cut(s) 110, 238
MaeIII GTNAC 1 cut(s) 392
MalI GATC 3 cut(s) 39, 338, 387
MboI GATC 3 cut(s) 37, 336, 385
MboII GAAGA 6 cut(s) 32, 192, 623, 871, 919, 934
MflI RGATCY 1 cut(s) 336
MluCI AATT 5 cut(s) 574, 649, 679, 799, 853
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 5 cut(s) 181, 184, 463, 632, 772
Mph1103I ATGCAT 1 cut(s) 718
MseI TTAA 3 cut(s) 92, 159, 902
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 2 cut(s) 124, 617
MspR9I CCNGG 5 cut(s) 23, 125, 617, 886, 940
Mva1269I GAATGC 2 cut(s) 349, 582
MvaI CCWGG 3 cut(s) 23, 886, 940
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 935, 949
NciI CCSGG 2 cut(s) 125, 617
NdeII GATC 3 cut(s) 37, 336, 385
NlaIII CATG 4 cut(s) 190, 287, 550, 848
NlaIV GGNNCC 3 cut(s) 106, 338, 544
NmuCI GTSAC 1 cut(s) 392
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 1 cut(s) 848
PaeI GCATGC 1 cut(s) 848
PagI TCATGA 1 cut(s) 186
PctI GAATGC 2 cut(s) 349, 582
PfeI GAWTC 2 cut(s) 183, 324
Psp6I CCWGG 3 cut(s) 21, 884, 938
PspGI CCWGG 3 cut(s) 21, 884, 938
PspN4I GGNNCC 3 cut(s) 106, 338, 544
PstI CTGCAG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 336
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 3 cut(s) 92, 159, 902
Sau3AI GATC 3 cut(s) 37, 336, 385
ScrFI CCNGG 5 cut(s) 23, 125, 617, 886, 940
SfaNI GCATC 3 cut(s) 157, 703, 725
SfcI CTRYAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 288
SpeI ACTAGT 1 cut(s) 376
SphI GCATGC 1 cut(s) 848
Sse9I AATT 5 cut(s) 574, 649, 679, 799, 853
SsiI CCGC 1 cut(s) 881
SspMI CTAG 3 cut(s) 377, 509, 611
StyD4I CCNGG 5 cut(s) 21, 123, 615, 884, 938
TaiI ACGT 2 cut(s) 113, 241
TaqI TCGA 2 cut(s) 178, 363
TasI AATT 5 cut(s) 574, 649, 679, 799, 853
TfiI GAWTC 2 cut(s) 183, 324
Tru1I TTAA 3 cut(s) 92, 159, 902
Tru9I TTAA 3 cut(s) 92, 159, 902
TscAI CASTG 2 cut(s) 40, 403
TseFI GTSAC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 4 cut(s) 17, 175, 300, 575
TspRI CASTG 2 cut(s) 40, 403
XagI CCTNNNNNAGG 1 cut(s) 467
XbaI TCTAGA 1 cut(s) 508
XceI RCATGY 1 cut(s) 848
XspI CTAG 3 cut(s) 377, 509, 611
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.