Rorug07G0093900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000155
Physical Location & Seq
Reverse (-)
7354272 .. 7354670
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0093900.1

Sequence Viewer

Length: 399 bp
ATGCCCAGCAACACCAGAATCTTGGAAGCTCTGAATGTCTGGGTAACCGGGTCGGGCGTGCAGTACCTGGTCCTGGCCCATGGCTTCGGCACTGATCAGTCCGCCTGGGGTCGCATTCTTCCTTTCTTCAAACCTTACTATCGCATCCTTCTATACGACCTCATTTGCGCCGGAAGCGTCAACCCCAATTACTTCGATTTCAACCGCAACACCAACCTGGACGCCTTCGTCGACTACTTGCTCAACATTCTTGACGCTGTGGGAGTCAAAAAGTGCGCCTACGTCGGCACTGACCAGTCCGCGCAAAACCCAGCTCCCCAAAAACAAGATCAAATCTTGTCCCTCTGTCGCCGCAATTGTCACCGAACCACCCTCCAATCCAAGCTCCTTGTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

132

Amino Acids

14.83

Weight (kDa)

8.73

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000155)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20530 FvH4_5g20530 FvH4_5g20611 FvH4_5g20621 FvH4_5g26390 FvH4_5g26400 FvH4_5g26410 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_5g29160 FvH4_6g18920 FvH4_6g18920 FvH4_6g18920 FvH4_6g33960
malus_domestica MD04G1058800.v1.1 MD12G1025400.v1.1 MD14G1024100.v1.1 MD14G1026000.v1.1 MD14G1026300.v1.1 MD14G1026400.v1.1 MD14G1026600.v1.1
prunus_persica Prupe.7G107300_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108600_v2.0.a1 Prupe.7G108700_v2.0.a1
pyrus_communis pycom04g05270 pycom12g02490 pycom12g02500 pycom14g02340 pycom14g02540
rosa_chinensis RchiOBHm_Chr3g0473911 RchiOBHm_Chr3g0473951 RchiOBHm_Chr3g0473961 RchiOBHm_Chr3g0474091 RchiOBHm_Chr3g0474151 RchiOBHm_Chr3g0474171 RchiOBHm_Chr3g0475381 RchiOBHm_Chr3g0475391 RchiOBHm_Chr7g0193261 RchiOBHm_Chr7g0205891 RchiOBHm_Chr7g0205901 RchiOBHm_Chr7g0205931 RchiOBHm_Chr7g0205941 RchiOBHm_Chr7g0205961 RchiOBHm_Chr7g0217271 RchiOBHm_Chr7g0217281
rosa_laevigata RLG00000002499 RLG00000003343 RLG00000003344 RLG00000003345 RLG00000003348 RLG00000004282 RLG00000023847 RLG00000023943 RLG00000023945 RLG00000023951 RLG00000023964 RLG00000023965 RLG00000023969 RLG00000023971
rosa_multiflora Rmu_co8482831.1_g000001 Rmu_sc0000076.1_g000028 Rmu_sc0000076.1_g000030 Rmu_sc0000076.1_g000032 Rmu_sc0000076.1_g000033 Rmu_sc0002414.1_g000019 Rmu_sc0002414.1_g000037 Rmu_sc0003170.1_g000001 Rmu_sc0003170.1_g000026 Rmu_sc0004084.1_g000005 Rmu_sc0004084.1_g000006 Rmu_sc0004084.1_g000014 Rmu_sc0004507.1_g000027 Rmu_sc0005137.1_g000001 Rmu_sc0005137.1_g000022 Rmu_sc0005137.1_g000038 Rmu_sc0007659.1_g000002 Rmu_sc0010415.1_g000002 Rmu_sc0013923.1_g000002 Rmu_sc0015051.1_g000001 Rmu_sc0016637.1_g000001 Rmu_sc0016637.1_g000003 Rmu_sc0018174.1_g000001 Rmu_sc0033900.1_g000001
rosa_roxburghii Rroxscaffold_3G00242480 Rroxscaffold_3G00251850 Rroxscaffold_3G00251880 Rroxscaffold_3G00251890 Rroxscaffold_3G00262240 Rroxscaffold_6G00406350 Rroxscaffold_6G00407490 Rroxscaffold_6G00407590 Rroxscaffold_6G00407650
rosa_rugosa Rorug03G0136900 Rorug03G0136900 Rorug03G0136900 Rorug03G0137000 Rorug03G0137200 Rorug03G0137400 Rorug03G0138400 Rorug03G0138700 Rorug03G0138700 Rorug03G0139000 Rorug03G0139100 Rorug03G0148300 Rorug03G0148400 Rorug03G0148500 Rorug07G0008600 Rorug07G0093700 Rorug07G0093800 Rorug07G0093900 Rorug07G0094000 Rorug07G0167300
rosa_samantha Rh3AG187100 Rh3AG187500 Rh3AG188600 Rh3AG189500 Rh3AG198400 Rh3AG198500 Rh3AG198600 Rh3BG215700 Rh3BG215800 Rh3BG216000 Rh3BG218100 Rh3BG218700 Rh3BG228400 Rh3BG228500 Rh3BG228600 Rh3CG212400 Rh3CG212600 Rh3CG213800 Rh3CG214300 Rh3CG222900 Rh3DG211600 Rh3DG211900 Rh3DG212100 Rh3DG213900 Rh3DG214100 Rh3DG223700 Rh3DG223900 Rh7AG134200 Rh7AG225400 Rh7AG225500 Rh7AG225600 Rh7AG225700 Rh7AG306800 Rh7BG135200 Rh7BG221300 Rh7BG221400 Rh7BG221500 Rh7BG221700 Rh7BG221900 Rh7BG222300 Rh7BG225100 Rh7BG225200 Rh7BG297700 Rh7CG138200 Rh7CG239000 Rh7CG239200 Rh7CG239500 Rh7CG239800 Rh7CG240100 Rh7CG325900 Rh7DG232100 Rh7DG232300 Rh7DG306500
rosa_wichuraiana Rw0G012880 Rw0G012890 Rw3G017130 Rw3G017180 Rw3G017300 Rw3G017310 Rw3G018020 Rw7G011480 Rw7G019440 Rw7G019450 Rw7G019470 Rw7G026050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 302
AciI CCGC 4 cut(s) 102, 205, 300, 352
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 130, 202
AjnI CCWGG 4 cut(s) 66, 72, 104, 216
AluBI AGCT 3 cut(s) 29, 314, 385
AluI AGCT 3 cut(s) 29, 314, 385
AlwNI CAGNNNCTG 1 cut(s) 67
AoxI GGCC 1 cut(s) 75
AspLEI GCGC 3 cut(s) 170, 278, 304
AspS9I GGNCC 2 cut(s) 70, 76
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 353
AvaII GGWCC 1 cut(s) 70
BciT130I CCWGG 4 cut(s) 68, 74, 106, 218
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 49
BisI GCNGC 1 cut(s) 352
BlsI GCNGC 1 cut(s) 353
Bme1390I CCNGG 5 cut(s) 49, 68, 74, 106, 218
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 70, 76
BmrFI CCNGG 5 cut(s) 49, 68, 74, 106, 218
BmsI GCATC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 49
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 79, 105
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 295
BseBI CCWGG 4 cut(s) 68, 74, 106, 218
BseDI CCNNGG 2 cut(s) 79, 105
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 295
BseYI CCCAGC 2 cut(s) 5, 310
BsgI GTGCAG 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 1 cut(s) 77
BsiSI CCGG 2 cut(s) 48, 171
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 94, 328
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 4 cut(s) 102, 205, 300, 352
BspANI GGCC 1 cut(s) 77
BspFNI CGCG 1 cut(s) 302
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 79, 105
BssMI GATC 2 cut(s) 94, 328
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 4 cut(s) 68, 74, 106, 218
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 79
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 1 cut(s) 144
BstFNI CGCG 1 cut(s) 302
BstHHI GCGC 3 cut(s) 170, 278, 304
BstKTI GATC 2 cut(s) 97, 331
BstMBI GATC 2 cut(s) 94, 328
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 4 cut(s) 68, 74, 106, 218
BstPI GGTNACC 1 cut(s) 43
BstSCI CCNGG 5 cut(s) 47, 66, 72, 104, 216
BstUI CGCG 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 22
BsuRI GGCC 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 90, 288
Cac8I GCNNGC 1 cut(s) 59
CaiI CAGNNNCTG 1 cut(s) 67
CfoI GCGC 3 cut(s) 170, 278, 304
Cfr13I GGNCC 2 cut(s) 70, 76
CseI GACGC 3 cut(s) 166, 230, 263
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 80
CviJI RGCY 5 cut(s) 29, 77, 84, 314, 385
CviKI_1 RGCY 5 cut(s) 29, 77, 84, 314, 385
CviQI GTAC 1 cut(s) 64
DpnI GATC 2 cut(s) 96, 330
DpnII GATC 2 cut(s) 94, 328
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EciI GGCGGA 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 70
Eco91I GGTNACC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 43
EcoRII CCWGG 4 cut(s) 66, 72, 104, 216
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 83
FaiI YATR 2 cut(s) 81, 154
FaqI GGGAC 1 cut(s) 325
FatI CATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 352
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 352
GlaI GCGC 3 cut(s) 169, 277, 303
GluI GCNGC 1 cut(s) 352
GsaI CCCAGC 2 cut(s) 9, 314
HaeIII GGCC 1 cut(s) 77
HapII CCGG 2 cut(s) 48, 171
HgaI GACGC 3 cut(s) 166, 230, 263
HhaI GCGC 3 cut(s) 170, 278, 304
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 3 cut(s) 168, 276, 302
HinP1I GCGC 3 cut(s) 168, 276, 302
HincII GTYRAC 2 cut(s) 181, 232
HindII GTYRAC 2 cut(s) 181, 232
HinfI GANTC 2 cut(s) 18, 264
HpaII CCGG 2 cut(s) 48, 171
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 181, 232
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 2 cut(s) 181, 232
Hpy99I CGWCG 2 cut(s) 233, 287
HpyAV CCTTC 2 cut(s) 158, 235
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 3 cut(s) 168, 276, 302
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 2 cut(s) 94, 328
LmnI GCTCC 2 cut(s) 319, 390
LweI GCATC 1 cut(s) 153
MabI ACCWGGT 1 cut(s) 66
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 2 cut(s) 43, 359
MalI GATC 2 cut(s) 96, 330
MboI GATC 2 cut(s) 94, 328
MboII GAAGA 2 cut(s) 110, 118
MfeI CAATTG 1 cut(s) 355
MluCI AATT 2 cut(s) 187, 355
MlyI GAGTC 1 cut(s) 273
MnlI CCTC 3 cut(s) 170, 353, 383
MspI CCGG 2 cut(s) 48, 171
MspR9I CCNGG 5 cut(s) 49, 68, 74, 106, 218
MunI CAATTG 1 cut(s) 355
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 4 cut(s) 68, 74, 106, 218
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 174
NciI CCSGG 1 cut(s) 49
NcoI CCATGG 1 cut(s) 79
NdeII GATC 2 cut(s) 94, 328
NlaIII CATG 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 353
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp6I CCWGG 4 cut(s) 66, 72, 104, 216
PspEI GGTNACC 1 cut(s) 43
PspFI CCCAGC 2 cut(s) 5, 310
PspGI CCWGG 4 cut(s) 66, 72, 104, 216
PspPI GGNCC 2 cut(s) 70, 76
PstNI CAGNNNCTG 1 cut(s) 67
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SalI GTCGAC 1 cut(s) 230
SatI GCNGC 1 cut(s) 352
Sau3AI GATC 2 cut(s) 94, 328
Sau96I GGNCC 2 cut(s) 70, 76
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 5 cut(s) 49, 68, 74, 106, 218
SetI ASST 8 cut(s) 31, 69, 136, 162, 219, 285, 316, 387
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 1 cut(s) 153
SinI GGWCC 1 cut(s) 70
Sse9I AATT 2 cut(s) 187, 355
SsiI CCGC 4 cut(s) 102, 205, 300, 352
StyD4I CCNGG 5 cut(s) 47, 66, 72, 104, 216
StyI CCWWGG 1 cut(s) 79
TaiI ACGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 195, 231
TasI AATT 2 cut(s) 187, 355
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 1 cut(s) 18
TscAI CASTG 2 cut(s) 97, 295
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspRI CASTG 2 cut(s) 97, 295
VpaK11BI GGWCC 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.